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PubMed1988

Sampling irregularity perturbs visual reconstruction.

We explored the human observer's ability to detect and discriminate sine-wave and square-wave gratings that were sampled at intervals varying from 4.7 to 9.4 arcmin. To study the effect of sampling irregularity on visual performance, we varied the position of each line sample on the basis of a Gaussian probability distribution, the standard deviation of which varied from 0 (regular sampling) to 4.7 arcmin (highly irregular sampling). The results indicate that irregular sampling has no systematic effect on the observer's ability merely to detect the presence of a sine- or square-wave grating. In contrast, sampling irregularity strongly impairs the subject's ability to discriminate between these waveforms. A model based on the convolution of difference-of-Gaussians-type weighting profiles predicted that sampling irregularity should have little to no effect on the output of a channel tuned to the third harmonic of the square-wave grating. The findings thus suggest the existence of a sampling scheme in the visual system. This scheme is based on local feature-selective mechanisms, probably edge detectors, that are highly sensitive to the relative position of the sample points in the space domain.

Discrimination, Psychological↗
PubMed1997

Sampling follicular fluid without altering follicular status in cattle: oestradiol concentrations early in a follicular wave.

A transvaginal, ultrasound-guided in situ technique was developed for sampling follicular fluid from 6.0-12.5 mm follicles in cattle, with minimal interference with the subsequent development of the sampled follicle. Each follicle was sampled only once and the status of the follicle (future dominant or subordinate) was determined retrospectively. A sample (20 microliters) was successfully obtained from 77% of 132 targeted follicles. Reasons for considering an attempt unsuccessful were as follows: (1) ovaries difficult to manipulate in two heifers (eight follicles), (2) samples contaminated with blood (11 samples), and (3) follicles sampled but the antrum subsequently developed an apparent blood clot (11 follicles). Only the 102 successful collections were used in the statistical analyses for evaluating oestradiol concentrations in the follicular fluid and the follicle growth profiles before and after sampling. The follicles were sampled once on days 1, 2, 3, or 4 after the emerging dominant follicle was 4 mm in diameter. On day 1, there were no differences in the oestradiol concentrations among follicles that later became the dominant follicle, largest subordinate follicle, or smaller subordinate follicles (means for diameters, 6.7-6.9 mm; means for oestradiol, 30-42 ng ml-1). The mean diameter of the dominant follicle increased linearly over the 4 days. Concentrations of oestradiol in the dominant follicle increased curvilinearly, resulting from a slower increase between days 1 (mean, 42 ng ml-1) and 2 (110 ng ml-1) than between days 2 and 3 (313 ng ml-1) and 3 and 4 (554 ng ml-1). Neither mean diameter nor mean oestradiol concentration of the largest subordinate follicle increased after day 2. Data were available from 19 follicular waves in which both the dominant and largest subordinate follicles were sampled on the same day. Oestradiol concentrations were not higher in the dominant follicle than in the largest subordinate follicle until the day after the two follicles began to deviate in growth rates (mean day of deviation, 2.5 +/- 0.2 days after emergence). These observations indicate that the future dominant follicle cannot be identified reliably by either its diameter or oestradiol production before the deviation in growth rates between the two largest follicles.

Animals↗
PubMed2003

Comparison of four extraction methods to detect hepatitis A virus RNA in serum and stool samples.

The efficiency of extraction methods for hepatitis A virus (HAV) RNA in clinical samples is of great importance for molecular diagnosis, especially in regions endemic for HAV, such as Brazil. We compared the efficiency of four different extraction techniques in serum and stool samples for the detection of hepatitis A virus by reverse transcription PCR (RT-PCR). We used PCR to analyse serum and stool samples of 12 patients who were referred to the Brazilian Reference Center for Viral Hepatitis (BRCVH) in Rio de Janeiro. The methods tested were Proteinase K, Silica, TRIzol and Guanidine isothiocyanate. Proteinase K extraction was the best method for serum samples; it detected the HAV-RNA in 11 of the 12 samples. The guanidine isothiocyanate method was the most effective for stool samples, detecting HAV-RNAs in 9 of the samples. The TRIzol(R) method worked best with serum samples, and the silica method was unsatisfactory with both serum and stool samples. The RNA extraction method affected the outcome. The use of appropriate RNA extraction methods is a critical step for successful and valid PCR studies on clinical samples. We recommend that RNA extraction techniques be carefully selected for their efficiency with each type of specimen.

Adolescent↗
PubMed2005

Diurnal and spatial (vertical) dynamics of nutrients (N, P, Si) in four sampling days (summer, fall, winter, and spring) in a tropical shallow reservoir and their relationships with the phytoplankton community.

The vertical and diurnal variation of nitrogen and phosphorus forms, as well as that of soluble reactive silica (SRS), were studied in four sampling days at Gar9as reservoir, a shallow tropical one located in the city of São Paulo, in southeastern Brazil. Except for N-NH4, all other inorganic forms of nitrogen (N-NO2, N-NO3, and total N) demonstrated decreased concentrations toward the bottom of reservoir. Similarly, all showed significant diurnal differences on every sampling day, with increased values during the night due to absence of photosynthetic assimilation during that period. In the sampling days, these forms decreased on the spring sampling day due to the bloom of Microcystis registered during this period of the year. All three forms of phosphorus (SRP, particulate P, and total P) showed significant vertical variation, except on the fall sampling day. On the summer sampling day there was an increase of both total P and particulate P, the latter because it constitutes more than 70% of the total P during all sampling days. Hourly phosphorus variation was significant during all sampling days, except for the summer one. The SRS vertical variation was significant during all sampling days, except for that in the spring. It was also different hourly on sampling days.

Animals↗
PubMed2006

Limited sampling strategy for predicting area under the concentration-time curve of mycophenolic acid in adult lung transplant recipients.

STUDY OBJECTIVE: To develop limited sampling strategies for estimation of mycophenolic acid exposure (by determining area under the concentration-time curve [AUC]) in lung transplant recipients by using sampling times within 2 hours after drug administration and a maximum of three plasma samples. DESIGN: Prospective, open-label clinical study. SETTING: Lung transplant clinic in Vancouver, British Columbia, Canada. PATIENTS: Nineteen adult (mean age 48.3 yrs) lung transplant recipients who were receiving mycophenolate mofetil therapy along with cyclosporine (9 patients) or tacrolimus (10 patients). INTERVENTION: Eleven blood samples were collected from each of the 19 patients over 12 hours: immediately before (0 hr) and 0.3, 0.6, 1, 1.5, 2, 4, 6, 8, 10, and 12 hours after administration of mycophenolate mofetil. MEASUREMENTS AND MAIN RESULTS: Mycophenolic acid levels in plasma were determined by a high-performance liquid chromatography-ultraviolet detection method. The 19 patients were randomly divided into index (10 patients) and validation (9 patients) groups. Limited sampling strategies were developed with multiple regression analysis by using data from the index group. Data from the validation group were used to test each strategy. Bias and precision of each limited sampling strategy were determined by calculating the mean prediction error and the root mean square error, respectively. The correlation between AUC and single concentrations was generally poor (r2= 0.18-0.73). Two single-concentration strategies, eight two-concentration strategies, and eight three-concentration strategies matched our criteria. However, the best overall limited sampling strategies (and their predictive performance) were the following: log AUC = 0.241 log C0 + 0.406 log C2 + 1.140 (bias -5.82%, precision 5.97%, r2= 0.828) and log AUC = 0.202 log C0 + 0.411 log C1.5 + 1.09 (bias -5.71%, precision 6.94%, r2= 0.791), where Cx is mycophenolic acid concentration at time x hours. CONCLUSION: Two-concentration limited sampling strategies provided minimally biased and highly precise estimation of mycophenolic acid AUC in lung transplant recipients. These optimal and most clinically feasible limited sampling strategies are based collectively on the number of blood samples required, r2 value, bias, and precision.

Adult↗
PubMed2000

Enumerative and binomial sampling plans for armored scale (Homoptera: Diaspididae) on kiwifruit leaves.

The spatial dispersion of armored scale insects; greedy scale, Hemiberlesia rapax (Comstock); and latania scale, Hemiberlesia lataniae (Signoret), was investigated on kiwifruit, Actinidia deliciosa (A. Chevalier) C. F. Liang et A. R. Ferguson, leaves in New Zealand. A universal description for dispersion was determined using Taylor's power law, which encompassed a wide range of different orchards, blocks, block sizes, sampling times, scale control practices, regions and seasons. Scale density significantly altered dispersion, especially at the high densities found on unsprayed kiwifruit. Most commercially managed kiwifruit blocks had low densities of <0.5 scale per leaf and had a slightly aggregated scale dispersion. Wilson and Room's binomial model, which incorporates a clumping pattern as a function of density, gave a significant relationship between the proportion of infested leaves and scale density. The optimal leaf sample sizes were estimated for predetermined levels of sampling reliability. Where population estimates require a high degree of precision and enumerative sampling methods are used, 2,500 leaves should be sampled when scale densities are near the current spray threshold of 4% infested leaves and 500 leaves at 20% infested leaves. For management-decision sampling, where a lower level of precision was acceptable, enumerative sampling would require that 400 leaves be sampled at 4%; or 85 leaves at 20% infested leaves. With binomial sampling to achieve an equivalent level of precision an increased sample size of 6-11% is required.

Animals↗
PubMed2001

Sequential sampling plans for western flower thrips (Thysanoptera: Thripidae) on greenhouse cucumbers.

The development of cost-effective and reliable sampling programs for the management of western flower thrips, Frankliniella occidentalis (Pergande), on greenhouse cucumbers is important for getting growers to adopt economic injury levels and economic thresholds. The objectives of this study were to develop two sequential sampling plans. A fixed-precision sequential sampling plan was designed for estimating F. occidentalis adult density at a fixed-precision level on cucumber flowers. Also, a sequential sampling plan for classifying thrips population levels as below or above economic thresholds was developed to assist in decision making for the timing of pesticide applications. Both sequential sampling plans were validated using a resampling simulation technique on nine independent data sets ranging in density from 1.25 to 12.95 adults per flower. With the fixed-precision sampling plan, average means obtained in 100 repeated simulation runs were within the 95% CI of the estimated mean for all data sets. Appropriate levels of precision for the different population densities were recommended based on the simulation results. With sequential sampling for classifying the population levels of thrips in terms of an economic threshold, it has the advantage of requiring smaller sample sizes to determine the population status when the population densities differ greatly from the critical density (i.e., economic threshold). However, this plan needs a great number of samples when population density is close to the critical density. In this case, use of a combination of both sampling plans is recommended.

Animals↗
PubMed2002

Alfalfa weevil (Coleoptera: Curculionidae) larval sampling: comparison of shake-bucket and sweep-net methods and effect of training.

Two field-sampling methods, shake-bucket and sweep-net, were compared for use in monitoring alfalfa weevil, Hypera postica (Gyllenhal), larvae in alfalfa hay of the high plains and intermountain region of North America. In this region, alfalfa grows to sufficient height to use both methods before the more damaging late instars peak in abundance. Both methods also were compared with extracting larvae by using Berlese funnels in the laboratory. The shake-bucket method was more sensitive in detecting small larvae (first and second instars) than large larvae (third and fourth instars), and the sweep-net method detected a lower proportion of small larvae. The number of larvae collected with the shake-bucket method was strongly correlated with number of larvae recovered from Berlese funnels (total larval counts, R2 = 0.85). Correlation of the sweep-net samples with the Berlese extraction was also significant but less strong (R2 = 0.56). In addition, sampler instruction was evaluated to determine whether demonstration training affects performance of inexperienced samplers using the two field-sampling methods. Training did not significantly change sampler performance in using the shake-bucket but did increase the number of large larvae when using the sweep-net. In addition, less variability was associated with the shake-bucket sampling method than with the sweep-net method for samplers who only had access to written sampling instructions. Therefore, when estimation of small larval abundance is desired for economic decision-making and sampling is performed by people with little or infrequent sampling experience, such as growers, the shake-bucket method is the preferred field-sampling method in the high plains and intermountain region of North America Sweep-net sampling is more variable than shake-bucket sampling, although demonstration training improves the usefulness of the sweep-net.

Animals↗
PubMed2006

Spatial pattern and sequential sampling of squash bug (Heteroptera: Coreidae) adults in watermelon.

Spatial distribution patterns of adult squash bugs were determined in watermelon, Citrullus lanatus (Thunberg) Matsumura and Nakai, during 2001 and 2002. Results of analysis using Taylor's power law regression model indicated that squash bugs were aggregated in watermelon. Taylor's power law provided a good fit with r2 = 0.94. A fixed precision sequential sampling plan was developed for estimating adult squash bug density at fixed precision levels in watermelon. The plan was tested using a resampling simulation method on nine and 13 independent data sets ranging in density from 0.15 to 2.52 adult squash bugs per plant. Average estimated means obtained in 100 repeated simulation runs were within the 95% CI of the true means for all the data. Average estimated levels of precision were similar to the desired level of precision, particularly when the sampling plan was tested on data having an average mean density of 1.19 adult squash bugs per plant. Also, a sequential sampling for classifying adult squash bug density as below or above economic threshold was developed to assist in the decision-making process. The classification sampling plan is advantageous in that it requires smaller sample sizes to estimate the population status when the population density differs greatly from the action threshold. However, the plan may require excessively large sample sizes when the density is close to the threshold. Therefore, an integrated sequential sampling plan was developed using a combination of a fixed precision and classification sequential sampling plans. The integration of sampling plans can help reduce sampling requirements.

Animals↗
PubMed2001

Sampling methods and residential factors affecting formaldehyde concentration in indoor air.

Formaldehyde (HCHO) is the most serious residential pollutant. In order to evaluate residential HCHO levels, two sampling methods have been recommended; one is a 30 minute sampling in a closed room, and the other is a 24 hour sampling with an ordinary lifestyle routine. The aim of this report was to clarify the difference between the HCHO levels obtained by the two sampling methods. Residential air in 58 rooms was sampled for 30 minutes by an active sampling method more than 5 hours after residents closed windows, and by a passive sampling method for 24 hours with an ordinary lifestyle routine. The HCHO concentration with the 30 minute sampling was 0.118+/-0.065 ppm (range: 0.034-0.295 ppm) and 36 rooms (62%) exceeded the Japanese guideline value of 0.08 ppm, while 5% were higher than 0.25 ppm. The HCHO concentration with the 24 hours sampling was 0.053+/-0.039 ppm (range: 0.02-0.167 ppm) and only 13 rooms (22%) exceeded 0.08 ppm. The relationship between the concentrations obtained by the two methods was linear. However, the level with the 24 hour sampling significantly reduced with prolonged window opening time, meaning that occupants made an effort to reduce the usual exposure to about 40% of the exposure in a closed room by opening windows in order to escape from irritation. Since major adverse effects of HCHO are irritation and sensitization, the occasional peak concentration must be focused. In order to evaluate residential HCHO levels, measurement in a closed room is recommended even if people are living there.

Air Conditioning↗
PubMed2006

Analysis of nodularin-R in eider (Somateria mollissima), roach (Rutilus rutilus L.), and flounder (Platichthys flesus L.) liver and muscle samples from the western Gulf of Finland, northern Baltic Sea.

Nodularin (NODLN) is a cyanobacterial hepatotoxin that may cause toxic effects at very low exposure levels. The NODLN-producing cyanobacterium Nodularia spumigena forms massive blooms in the northern Baltic Sea, especially during the summer. We analyzed liver and muscle (edible meat) samples from common eider (Somateria mollissima), roach (Rutilus rutilus L.), and flounder (Platichthys flesus L.) for NODLN-R by liquid chromatography/mass spectrometry (LC-MS) and enzyme-linked immunosorbent assay (ELISA). Thirty eiders, 11 roach, and 15 flounders were caught from the western Gulf of Finland between September 2002 and October 2004. Eiders from April to June 2003 were found dead. The majority of samples were analyzed by LC-MS and ELISA from the same sample extracts (water:methanol:n-butanol, 75:20:5, v:v:v). Nodularin was detected in 27 eiders, nine roach, and eight flounders. Eider liver samples contained NODLN up to approximately 200 microg/kg dry weight and muscle samples at approximately 20 microg/kg dry weight, roach liver samples 20 to 900 microg NODLN/kg dry weight and muscle samples 2 to 200 microg NODLN/kg dry weight, and flounder liver samples approximately 5 to 1,100 microg NODLN/kg dry weight and muscle samples up to 100 microg NODLN/kg dry weight. The NODLN concentrations found in individual muscle samples of flounders, eiders, and roach (1-200 microg NODLN/kg dry wt) indicate that screening and risk assessment of NODLN in Baltic Sea edible fish and wildlife are required for the protection of consumer's health.

Animals↗
PubMedDate not supplied

Effects of sample storage on biosolids compost stability and maturity evaluation.

Compost stability and maturity are important parameters of compost quality. To date, nearly all compost characterization has been performed using samples freshly collected because sample storage can affect compost stability and maturity evaluation. However, sample preservation is sometimes necessary, especially for scientific research purposes. There is little information available on the effects of sample storage on compost stability and maturity. Samples of biosolids compost with different levels of stability and maturity were collected from four compost facilities in Florida (referred to as Register, Winslow, Sunset, and Meadow). Comparisons of CO2 evolution, seed germination rate, and water-soluble organic carbon (WSOC) were made between fresh samples with short storage at 4 degrees C for less than 1 wk and air-dried or frozen compost samples stored for 1 yr. The effects of storage (air-dry or frozen) on the measured parameters depended on compost stability and maturity and on the compost material source. Frozen storage reduced the peak CO2 evolution of Register samples by 12 to 29%, while accumulated CO2 evolution was reduced by 43 to 64% and 110 to 277% with air-dry and frozen storage, respectively. The storage effect on CO2 evolution with more stable compost was inconsistent. Storage did not affect compost phytotoxicity, except for samples from the Sunset facility. Air-drying reduced the WSOC by up to 35%, and freezing increased it by up to 34%, while both storage methods had no significant effect on samples of low WSOC. Despite all these variations, WSOC had a significant and consistent relation to CO2 evolution and seed germination rates with R2 of 0.78 and 0.57, respectively, regardless of storage methods.

Carbon Dioxide↗
PubMed2007

Improving the accuracy of sediment-associated constituent concentrations in whole storm water samples by wet-sieving.

Sand-sized particles (>63 microm) in whole storm water samples collected from urban runoff have the potential to produce data with substantial bias and/or poor precision both during sample splitting and laboratory analysis. New techniques were evaluated in an effort to overcome some of the limitations associated with sample splitting and analyzing whole storm water samples containing sand-sized particles. Wet-sieving separates sand-sized particles from a whole storm water sample. Once separated, both the sieved solids and the remaining aqueous (water suspension of particles less than 63 microm) samples were analyzed for total recoverable metals using a modification of USEPA Method 200.7. The modified version digests the entire sample, rather than an aliquot, of the sample. Using a total recoverable acid digestion on the entire contents of the sieved solid and aqueous samples improved the accuracy of the derived sediment-associated constituent concentrations. Concentration values of sieved solid and aqueous samples can later be summed to determine an event mean concentration.

Geologic Sediments↗
PubMed2005

Assessment of the effect of dilution of blood samples with sodium heparin on blood gas, electrolyte, and lactate measurements in dogs.

OBJECTIVE: To evaluate the effect of dilution of blood samples with sodium heparin on blood gas, electrolyte, and lactate measurements in dogs. Sample Population-Venous blood samples collected from 6 adult dogs of various breeds. PROCEDURE: Syringes were prepared with anticoagulant via 1 of 4 techniques, and the residual volume of liquid heparin in each type of prepared syringe was determined. Blood gas values and other selected clinicopathologic variables were measured in whole blood samples after collection (baseline) and after aliquots of the samples were diluted with heparin via 1 of the 4 manual syringe techniques. By use of a tonometer, whole blood samples were adjusted to 1 of 3 oxygen concentrations (40, 100, or 600 mm Hg) and the PO2 values were measured at baseline and subsequent to the 4 heparin dilutions. RESULTS: The 4 syringe techniques resulted in 3.9%, 9.4%, 18.8%, and 34.1% dilutions of a 1-mL blood sample. Compared with baseline values, dilution of blood samples with liquid heparin significantly changed the measured values of PCO2, PO2, and base deficit and concentrations of electrolytes and lactate. Of the variables assessed, measurement of ionized calcium concentration in blood was most affected by heparin dilution. CONCLUSIONS AND CLINICAL RELEVANCE: These findings in dogs indicate that dilution of blood samples with heparin can be a source of preanalytical error in blood gas, electrolyte, and lactate measurements. Limiting dilution of blood samples with heparin to < 4% by volume via an evacuation technique of syringe heparinization is recommended.

Animals↗
PubMed2006

Evaluation of cost-effectiveness of targeted sampling methods for detection of Mycobacterium avium subsp paratuberculosis infection in dairy herds.

OBJECTIVE: To investigate the epidemiologic and financial impacts of targeted sampling of subpopulations of cows, compared with random sampling of all cows, for classification of dairy herd infection status for paratuberculosis. ANIMALS: All cows from 4 infected herds with a low-to-moderate prevalence of paratuberculosis and from 1 noninfected herd in California. PROCEDURE: The infection status of each cow was classified on the basis of results of an ELISA or combined ELISA and fecal culture results. Thirteen sampling schemes designed to randomly sample cows on the basis of lactation number, stage of lactation, and milk production were evaluated. Sampling without replacement was used to obtain a probability of herd detection of paratuberculosis for each evaluated sampling method and for simulated sample sizes between 30 and 150 cows. Marginal cost-effectiveness analysis was used to determine the cost increase relative to the increase in detection probability. RESULTS: Sampling cows in the third or higher lactation and > or = 200 days into lactation yielded the highest detection probability in most instances, resulting in a detection probability that was 1.4 to 2.5 times that obtained by sampling 30 cows in the second or higher lactation. Costs of testing via the alternative method with a 95% detection probability were approximately dollar 300 lower in a high-prevalence herd (31%) and dollar 800 lower in a low-prevalence herd (9%), compared with use of the reference method. CONCLUSIONS AND CLINICAL RELEVANCE: Detection of herds with paratuberculosis could be improved, and costs of testing substantially reduced by sampling targeted groups of cows.

Animals↗
PubMed1997

Preparation and characteristics of standard reference samples of fibrous minerals for biological experiments.

Standard reference samples of fibrous minerals to be used for in vitro and in vivo (injection) biological experiments were prepared. Ten samples were selected from among the fibrous minerals currently used in industry: man-made mineral fibers (MMMF); glass wool (GW1), rock wool (RW1), micro glass fiber (MG1), refractory ceramic fibers (RF1, RF2), and mullite fibers (RF3), whiskers; potassium titanate (PT1), silicon carbide (SC1) and rutile (TlO2)(TO1), and a natural fibrous mineral; wollastonite (WO1). The MMMF samples were prepared by using the size-selective press method. The whisker samples and WO1 were all commercial products. The prepared samples were examined by X-ray diffraction and X-ray fluorescence analyses, and no impurities were identified in any of the samples at a level of 1%, although WO1 was found to have about 5% calcite and a trace amount of quartz (< 1%). The fiber sizes were measured by TEM. The geometric-mean length (micron), width (micron) and SD (in parenthesis) are: GW1 20.0 (2.58), 0.88 (3.10); RW1 16.5 (2.51), 1.80 (2.32); MG1 3.0 (2.22), 0.24 (2.35); RF1 12.0 (2.36), 0.77 (2.53); RF2 11.0 (1.96), 1.10 (2.00); RF3 11.0 (1.75), 2.40 (1.37); PT1 6.0 (2.04), 0.35 (1.51); SC1 6.40 (2.45), 0.30 (1.58); TO1 2.1 (2.00), 0.14 (1.53); WO1 10.5 (2.03), 1.00 (1.72). We concluded that these prepared fiber samples can be safely used for biological experiments. Sample sets containing about one gram of each sample known as JFM standard reference samples are provided by the Japan Fibrous Material Research Association (JFMRA).

Microscopy, Electron↗
PubMed2006

Environmental sampling for detection of Mycobacterium avium ssp. paratuberculosis on large California dairies.

Environmental samples collected from each of 3 locations on 23 large California dairies were cultured to evaluate the utility of this approach for identifying herds infected with Mycobacterium avium ssp. paratuberculosis. Results were compared with concurrent ELISA testing of > or = 60 animals in each herd, and with previously performed individual and pooled fecal cultures of 60 animals. The estimated proportions of infected herds did not differ significantly among the testing methods (environmental sampling, 74%; previous fecal culture, 70%; and concurrent ELISA testing, 65%). Measures of agreement between environmental sampling and the results of previous fecal cultures were 70% (observed agreement), 85% (positive agreement), 62% (negative agreement), and 0.47 (kappa), whereas agreement between environmental sampling and concurrent ELISA testing was 65, 75, and 43%, and 0.19, for the same measures, respectively. The proportion of positive environmental samples on each farm was significantly correlated with the proportion of seropositive animals (r = 0.53), suggesting that environmental sampling may also provide a qualitative estimate of within-herd prevalence. Of the sampling locations that were evaluated, samples of lagoon water (15/23; 65%) were significantly more likely to yield a positive result than were composite manure samples (8/22; 36%) collected from the sick/fresh cow pen or from the alleyway (9/23; 39%) where cows exited from the milking parlor. Environmental sampling was an effective and inexpensive method of identifying herds infected with Mycobacterium avium ssp. paratuberculosis.

Animals↗
PubMed1994

Bias in composite milk samples with unequal milking intervals.

Milk samples from a herd with milk intervals approximately 14-h nights and 10-h days were used to examine potential bias in measurements with composite samples. Six consecutive milkings were weighted and sampled individually. Composite samples for a day were determined mathematically from the data. Composite samples with equal amounts from a.m. and p.m. milkings gave fat percentage measurements that were .07% above the true daily measurement. Using the milking interval to determine the portion of sample from each milking reduced this bias to -.02%. Protein percentage and SCC were satisfactory with equal sampling (mean bias of .01% and 7, respectively) but were improved slightly with milking interval sampling regimen (mean bias of .00% and 1, respectively). Fat yields were determined with equal portions, milking interval portions, and two plans available from DHIA, namely, alternate component sampling and alternate a.m.-p.m. Based on mean deviation from true fat yield, alternate a.m.-p.m. was as accurate as alternate component sampling, but variations were greater with alternate a.m.-p.m.

Animals↗