Search PubMed⌕ Search

SEARCH · Search PubMed

Results for “Information Retrieval Systems”

Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 127 records · Page 7Linked to original sources

MorphoSaurus--design and evaluation of an interlingua-based, cross-language document retrieval engine for the medical domain.

OBJECTIVES: We propose an interlingua-based indexing approach to account for the particular challenges that arise in the design and implementation of cross-language document retrieval systems for the medical domain. METHODS: Documents, as well as queries, are mapped to a language-independent conceptual layer on which retrieval operations are performed. We contrast this approach with the direct translation of German queries to English ones which, subsequently, are matched against English documents. RESULTS: We evaluate both approaches, interlingua-based and direct translation, on a large medical document collection, the OHSUMED corpus. A substantial benefit for interlingua-based document retrieval using German queries on English texts is found, which amounts to 93% of the (monolingual) English baseline. CONCLUSIONS: Most state-of-the-art cross-language information retrieval systems translate user queries to the language(s) of the target documents. In contra-distinction to this approach, translating both documents and user queries into a language-independent, concept-like representation format is more beneficial to enhance cross-language retrieval performance.

Abstracting and Indexing↗

HyperOncology: demonstration of an evolving comprehensive hypermedia-based workstation for the radiation oncologist.

HyperOncology is a prototype hypermedia-based workstation designed for the practicing radiation oncologist. Individual patient records consist of linked demographic, clinical history, presentation, staging, course, laboratory and treatment data. Searching and sorting capabilities, navigational aids, information printing and archiving, plotting capability, and graphics and updating tools are available. Upon integration with an evolving knowledge base, HyperOncology will eventually become a comprehensive clinical database and information retrieval system in the specialty of radiation oncology.

Information Storage and Retrieval↗

Development and implementation of an expert information system (BRITE) used in technical support of medical diagnostics customers.

We developed BRITE (Bringing Resources and Information to Employees), an expert information retrieval system, for problem solving and retrieving technical product information. Specialists in our Technical Assistance Center (TAC) use the BRITE system on a Pentium workstation to access information in < 3 s. Manuals, technical bulletins, parts lists, and administrative tools such as word processing and network fax are available electronically. The system allows consistent troubleshooting and definition of customers' problems by TAC specialists. BRITE seamlessly integrates expert system, document retrieval, and relational database technologies; the system runs on a token ring local area network, which is part of a Ciba Corning Diagnostics wide area network. Information received over the wide area network is used to develop and update BRITE daily. BRITE is kept current by input or troubleshooting and new applications from TAC specialists.

Chemistry, Clinical↗

Contextual models of clinical publications for enhancing retrieval from full-text databases.

Conventional methods for retrieving information from the medical literature are imprecise and inefficient. Information retrieval systems employ unmanageable indexing vocabularies or use full-text representations that overwhelm the user with irrelevant information. This paper describes a document representation designed to improve the precision of searching in textual databases without significantly compromising recall. The representation augments simple text word representations with contextual models that reflect recurring semantic themes in clinical publications. Using this representation, a searcher may indicate both the terms of interest and the contexts in which they should occur. The contexts limit the potential interpretations of text words, and thus form the basis for more precise searching. In this paper, we discuss the shortcomings of traditional retrieval systems and describe our context-based representation. Improved retrieval performance with contextual models is illustrated by example, and a more extensive study is proposed. We present an evaluation of the contextual models as an indexing scheme, using a variation of the traditional inter-indexer consistency experiments, and we demonstrate that contextual indexing is reproducible by minimally trained physicians and medical students.

Abstracting and Indexing↗

User evaluation of a graphical user interface for biomedical literature search.

This paper gives a short overview of the Archimedes Network System, an information retrieval system that allows the user to browse, in a visual way, through domain knowledge about the topics discussed in the documents. The system was evaluated by medical students who used the system to find documents in Medline. The results were comparable with the results of WinSpirs, a Boolean retrieval system.

Computer Communication Networks↗

Enhancing access to the Bibliome: the TREC Genomics Track.

The growing amount of scientific discovery in genomics and related biomedical disciplines has led to a corresponding increase in the amount of on-line data and information. A new challenge for biomedical researchers has been how to access and manage this ever-increasing quantity of information. The Text Retrieval Conference (TREC) has implemented a Genomics Track to create an experimental environment for research in the use of information retrieval systems in the genomics domain. In the first year of the track, an ad hoc document retrieval task and an information extraction task were carried out by 29 research groups. Future work will focus on more complex data sources, searching tasks, and types of experiments.

Computational Biology↗

Effective access to distributed heterogeneous medical text databases.

INQUERY is an advanced text information retrieval system developed by the Information Retrieval Laboratory of the University of Massachusetts in Amherst. It is based on Bayesian inference networks, which are probabilistic models for reasoning with multiple sources of uncertain evidence. The evidence, in this case, is the presence or absence of words and/or phrases in a document. Evidence is combined into belief that a document is relevant. The INQUERY retrieval engine has been developed with the support of ARPA, NSF, and industrial funding. It has a number of unique features and has achieved excellent results in the TIPSTER and TREC evaluations. Informatics research and application development using INQUERY has recently begun in the medical domain, including a new ARPA initiative concerned with clinical text. The features that we will focus on in this demonstration are: Automatic processing of natural language queries, including the extraction of phrases and specific medical concepts such as drug doses; Document selection through automatic relevance feedback and routing techniques, including the construction of complex queries using the INQUERY query language; The integration of conventional database techniques with text analysis and retrieval; Automatic thesaurus generation and query expansion using the PhraseFinder system; Distributed database access, including automatic database selection and merging of local searches; this will be demonstrated using a collection of medical databases; Retrieval based on passages, rather than whole documents.

Bayes Theorem↗

Thesauri and formal classifications: terminologies for people and machines.

Terminologies are now software. They are key components of the integration of electronic patient records, decision support systems and information retrieval systems. To be used as software, the different types of content in traditional terminologies must be separated, which we term here: conceptual, linguistic, inferential and pragmatic. The conceptual knowledge at the heart of the terminology needs to be expressed formally in order to provide a dependable framework for the other types of knowledge. Information left implicit in most existing coding and classification systems must be made explicit. The test of the resulting terminologies is how well they support software for key functions: including data entry, information retrieval, mediation, indexing, and authoring.

Abstracting and Indexing↗

Evaluating lexical variant generation to improve information retrieval.

Techniques for managing lexical variation constitute an integral part of information retrieval systems. We report on a series of experiments aimed at evaluating LVG, a lexical variant management tool which addresses the particular problems involved in matching health related vocabularies to concepts in the Unified Medical Language System (UMLS) Metathesaurus. Experiments conducted on data from the Large Scale Vocabulary Test indicate the effectiveness of this approach to managing biomedical information.

Evaluation Studies as Topic↗

General practitioners' attitudes towards future developments in practice computing--a representative survey in the north of Germany.

A postal questionnaire was sent to a random sample of general practitioners in Lower Saxony, Germany to assess how general practitioners regard newly developed but not yet implemented options of practice computers and future applications such as expert systems and information retrieval systems. Replies were received from 276 (response rate 73.6%) general practitioners. Replying doctors were younger (P < 0.05) but they did not differ by sex, practice location, type of vocational training and grade of computerization from non-responding GPs. Twenty-eight per cent of the practices were computerized. Doctors who currently used a computer and those who intended to do so within the next 5 years were significantly younger than those doctors who did not intend to computerize their practice (P < 0.001). Female doctors were less willing to buy a computer than their male colleagues (P < 0.05). A computerized drug database and a medical library ranked best from 8 options given. Overall attitudes to all features were positive, except for an expert system giving criteria for referrals to specialist care. Doctors already working with a computer and those intending to buy one were significantly more positive about future options for computers than those doctors who do not intend to use a computer (P < 0.01). GPs' attitudes about new features of practice computers in general were positive but even more so about those options which are already available. Referral to a specialist seems to be a crucial point for GPs--they apparently do not want to be guided by a computer here.(ABSTRACT TRUNCATED AT 250 WORDS)

Attitude of Health Personnel↗

Effective retrieval in Hospital Information Systems: the use of context in answering queries to Patient Discharge Summaries.

The move towards the electronic storage of medical records in Hospital Information Systems (HISs) presents significant challenges for AI retrieval techniques. In this paper, we argue that adequate information retrieval in such systems will have to rely on the exploitation of the conceptual knowledge in those records rather than superficial string searches. However, this course of action is dependent on the developments of natural language processing techniques and on retrieval systems that can exploit semantic/conceptual knowledge. We present a retrieval system, which attempts to realise the second of these developments. This system, called CONIR [developed in the context of the European Community project MENELAS (AIM 2023)] operates in the domain of Patient Discharge Summaries on coronary illness. CONIR uses flexible retrieval techniques, that exploit conceptual context information, over a database of elaborated semantic records. In the course of the paper we outline the sorts of knowledge structures that are required to do this type of retrieval and indicate how they are constructed.

Abstracting and Indexing↗

A classification and coding system for information retrieval on diagnosis and therapy.

The Wilmer Information System uses an updated hierarchical code derived from the ICD-9 code. The process of coding has been made as simple as possible by the development of Customized Coding Sheets containing the most commonly used diagnoses for each subspecialty. Interactive data entry and retrieval programs have been developed which allow great flexibility in precisely selecting either individual patients or groups of patients for chart review.

Computers↗

A computerized on-line key word indexing system for drug information retrieval.

The Idaho Drug Information Service has been in operation since 1972. During this time, five different files and manual methods of filing have evolved. As a result of confusion over indexing terms, information became lost within the filing systems, and the files fell into disuse. A reorganization of the files was undertaken in an attempt to develop a filing system that would be functional and efficient. Methods of manual filing are briefly reviewed. A computerized on-line key word indexing system for information storage and retrieval was initiated. The development and operation of the Drug Information Retrieval Terminal System (DIRTS) is described completely. At this time, DIRTS is fully operational. The system has eliminated the previous problems encountered with the manual filing systems, and user response has been good.

Abstracting and Indexing↗

A real-time and dynamic biological information retrieval and analysis system (BIRAS).

The aim of this study is to design a biological information retrieval and analysis system (BIRAS) based on the Internet. Using the specific network protocol, BIRAS system could send and receive information from the Entrez search and retrieval system maintained by National Center for Biotechnology Information (NCBI) in USA. The literatures, nucleotide sequence, protein sequences, and other resources according to the user-defined term could then be retrieved and sent to the user by pop up message or by E-mail informing automatically using BIRAS system. All the information retrieving and analyzing processes are done in real-time. As a robust system for intelligently and dynamically retrieving and analyzing on the user-defined information, it is believed that BIRAS would be extensively used to retrieve specific information from large amount of biological databases in now days. The program is available on request from the corresponding author.

Animals↗

[The Stomatology Information Retrieval (Reference) System].

The structure and functions of the "Stomatology" information and search (inquiry) system are described. The system includes data on the designers, certifiers, and distributors of equipment for dentistry, therapeutic and training institutions, Ministry of Health, All-Russian Association of Stomatologists, Central Research Institute of Dentistry, editorial boards of journals in dentistry, and their relationship through the Mednet federal public health network.

Advertising↗

Estimating the satisfaction of information users.

Several factors influence the responses of users of information retrieval systems who are asked to evaluate the service provided by a system. To realistically estimate user satisfaction, different aspects of the search outcome should be explored. This paper analyzes the data obtained in a follow-up questionnaire sent to a sample of MEDLINE users who had requested searches at seven information centers within a two-month period. The questionnaire requested the user's appraisal of the value of the search and of the usefulness of the retrieved references. A comparison of different items of the questionnaire revealed some contradictions between an overall appraisal of the service and more specific responses on the outcome of the search. Caution is advised in inferring the satisfaction of information needs from the users' evaluation of an information retrieval system.

Consumer Behavior↗

The role of title, metadata and abstract in identifying clinically relevant journal articles.

Access to current clinical information involves searches of bibliographic databases, such as MEDLINE, and subsequent evaluation of retrieval results for relevance to a specific clinical situation and quality of the reported research. We establish the amount of information that needs to be provided by an information retrieval system to assist healthcare practitioners in identifying clinically relevant information and evaluating its potential strength of evidence. We find 92% of titles informative enough for a practitioner to correctly classify publications as clinical, but not sufficient for classification of research quality. We suggest automatic organization of retrieval results into strength of evidence categories to supplement title-based judgments and provide quick access to the abstracts of the most promising articles. We find information in the abstracts sufficient to identify articles potentially immediately useful for clinical decision support. These findings are important to the design of information retrieval systems supporting small, low-bandwidth handheld computers.

Abstracting and Indexing↗

ArchiMed: a medical information and retrieval system.

ArchiMed is a highly flexible medical data storage and retrieval system which adds sophisticated clinical research support to a standard hospital information system (HIS). Currently, the HIS of Vienna General Hospital-University Hospital (2000 beds) stores the clinical data of over 2 million patients. While this system supports patient care (e.g., ADT, clinical chemistry, diagnosis, procedures), it has no features to facilitate research, such as the management of clinical studies. ArchiMed is designed to support clinical research. It includes an independent database, which mirrors virtually all the information held in the HIS while also allowing new data to be collected independently and to be added to the database. Flexible retrieval and analysis of data contained in the database are then possible. Thus, existing patient data can be smoothly incorporated into a study together with data collected specifically for research purposes. The system has already been successfully installed in the departments of surgery and soon in other departments as well.

Austria↗