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PubMed1996

Nonsequential developmental trajectories lead to dimorphic vocal circuitry for males with alternative reproductive tactics.

Midshipman fish, Porichthys notatus, have two male reproductive morphs: type 1 males generate long duration advertisement calls ("hums") to attract females to a nest; type II males sneak-spawn and, like females, do not produce mate calls but generate short duration agonistic calls. A vocal pacemaker circuit includes: motoneurons in the caudal brain stem and rostral spinal cord that innervate vocal/sonic muscles; pacemaker neurons that are located ventrolateral to motoneurons and establish their fundamental discharge frequency; and a ventral medullary nucleus that couples the motoneuron-pacemaker circuit bilaterally. Transneuronal biocytin transport identified morph-specific developmental trajectories for the vocal circuit. Among nonreproductive, juvenile type I males, motoneuron soma size and motor nucleus volume increase most during a stage prior to sexual maturation. An additional increase in motoneuron size and nucleus volume is coupled to the greatest increase in pacemaker soma size at a stage coincident with the onset of sexual maturity; ventral medullary neurons show similar growth increments during both stages. Type II males (and females) mature with no or little change in cell size or motor nucleus volume. The results indicate that alternative mating tactics are paralleled by alternative developmental trajectories for the neurons that determine tactic-specific behaviors, in this case vocalizations. Together with aging data based on otolith growth, the results support the hypothesis that alternative male morphs in midshipman fish adopt nonsequential, mutually exclusive life history tactics.

Aging↗
PubMed1999

An optimized center-out k-space trajectory for multishot MRI: comparison with spiral and projection reconstruction.

A method for collecting MRI data on a set of rotated trajectories that begin at the center of k-space is outlined. It is theoretically slightly faster, slightly less susceptible to off-resonance and motion-induced phase, and produces images with slightly better signal-to-noise ratio than methods using Archimedean spiral trajectories, particularly for a short sampling duration. It also produces more accurate images than those of projection reconstruction methods, which are significantly undersampled azimuthally. This method may be most useful when imaging areas with large inhomogeneities (e.g., near metallic implants), short T(2) species, or high turbulence (e.g., gas imaging). Magn Reson Med 42:714-720, 1999.

Algorithms↗
PubMed2000

Reduced aliasing artifacts using variable-density k-space sampling trajectories.

A variable-density k-space sampling method is proposed to reduce aliasing artifacts in MR images. Because most of the energy of an image is concentrated around the k-space center, aliasing artifacts will contain mostly low-frequency components if the k-space is uniformly undersampled. On the other hand, because the outer k-space region contains little energy, undersampling that region will not contribute severe aliasing artifacts. Therefore, a variable-density trajectory may sufficiently sample the central k-space region to reduce low-frequency aliasing artifacts and may undersample the outer k-space region to reduce scan time and to increase resolution. In this paper, the variable-density sampling method was implemented for both spiral imaging and two-dimensional Fourier transform (2DFT) imaging. Simulations, phantom images and in vivo cardiac images show that this method can significantly reduce the total energy of aliasing artifacts. In general, this method can be applied to all types of k-space sampling trajectories.

Algorithms↗
PubMed2026

Stem Cell Differentiation Disperses Transcriptional Clusters via a Conserved Surface-Condensate Trajectory.

Stem cells exhibit exceptionally prominent transcriptional clusters, which dissolve with progressing differentiation. Although these clusters are assigned central roles in embryonic gene regulation, their formation and loss during differentiation remain poorly understood. This study reveals that these prominent clusters disperse along a conserved trajectory in mouse embryonic stem cells, fruit fly testes, and zebrafish embryos. Imaging and lattice simulations show that these clusters form via surface condensation on H3K27ac-marked super-enhancer regions, which act as genomic scaffolds. Upon differentiation, partial loss of these active epigenetic marks and transcription-driven unfolding lead to dispersal of the prominent clusters. The block copolymer-based lattice simulations explain this process as a conserved trajectory through a three-dimensional state space, governed by surface condensation principles that extend beyond canonical liquid-liquid phase separation. This work marks surface condensation as a biophysical mechanism for the dynamic organization of stem cell-specific transcriptional hubs and demonstrates evolutionary conservation in several organisms. By uncovering a conserved biophysical mechanism for transcriptional organization in development, our work illustrates how polymer properties can contribute to the control of cell identity and fate.

Animals↗
PubMed2005

Listeria's right-handed helical rocket-tail trajectories: mechanistic implications for force generation in actin-based motility.

Listeria monocytogenes forms right-handed helical rocket tail trajectories during actin-based motility in cell-free extracts, and this stereochemical feature is consistent with actoclampin's affinity-modulated, clamped-filament elongation model [Dickinson and Purich, 2002: Biophys J 82:605-617]. In that mechanism, right-handed torque is generated by an end-tracking molecular motor, each comprised of a filament barbed end and clamping protein that processively traces the right-handed helix of its filament partner. By contrast, torque is not a predicted property of those models (e.g., elastic propulsion, elastic Brownian ratchet, tethered ratchet, and insertional polymerization models) requiring filament barbed ends to depart/detach from the motile object's surface during/after each monomer-addition step. Helical trajectories also explain why Listeria undergoes longitudinal-axis rotation on a length-scale matching the helical periodicity of Listeria's rocket tails.

Actins↗
PubMed1976

Fiber trajectories of olfactory bulb efferents in the hamster.

Olfactory bulb efferents sweep caudally over the surface of the piriform lobe in a broad fiber sheet. The internal organization of this axon population was analysed by topologically transforming the cortical surface from its in situ cylindrical form into an unrolled (flattened) map. The distribution of degeneration elicited by restricted bulb lesions and fiber transections was then reconstructed onto this map. Most of the projection cortex of the main olfactory bulb is innervated in a widespread, non-topographic manner by axons that collect in the compact bundle of the lateral olfactory tract (LOT). LOT collateral branches bound for the prepiriform cortex veer laterally off the main trajectory of the tract at an angle of 50 degrees or less. Thus, transection of discrete fiber populations leaves only a small wedge-shaped pocket of totally denervated cortex distal to the cut. The medial half of the olfactory tubercle and the hippocampal rudiment receive their bulbar input along medially disposed fibers that do not join the LOT proper. The lateral half of the olfactory tubercle, however, receives an input from LOT fiber collaterals as well as these medial bulb efferents. Finally, much of the corticomedial amygdaloid complex receives fibers from the accessory olfactory bulb along a specialized subdivision of the LOT, the accessory olfactory tract. These observations are expressed in a schematic summary of the trajectories of olfactory bulb efferents as they appear in the unrolled map and in the more standard ventral view of the hamster brain.

Animals↗
PubMed1979

Trajectory of group Ia afferent fibers stained with horseradish peroxidase in the lumbosacral spinal cord of the cat: three dimensional reconstructions from serial sections.

A reconstruction was made of the intramedullary trajectory of 23 physiologically identified Ia afferents from cat hind limb muscles (medial gastrocnemius, soleus, plantaris, flexor digitorum-hallucis longus, and hamstring). The afferents were stained by intra-axonally injected HRP. The axons of these afferents were traced over distances of 5.8 mm to 15.7 mm rostrocaudally. In the dorsal funiculus fibers from all the muscles showed a similar course and similarly bifurcated into an ascending and a descending branch. The mean diameters of stem axons, ascending branches, and descending branches were 6.6 micrometer, 5.8 micrometer, and 3.0 micrometer, respectively. Within the analyzed lengths of the spinal cord five to eleven collaterals were given off from the two branches. The distances between adjacent collaterals of the ascending and descending branches averaged 1200 micrometer and 790 micrometer, respectively. The collaterals as a rule passed through the medial half of the dorsal horn before they entered the deeper parts of the gray matter. The terminal distribution areas common to all Ia collaterals were: (1) the medial half of the base of the dorsal horn, mainly lamina VI: (2) lamina VII; and (3) lamina IX. The numbers of terminals were largest in lamina IX and smallest in lamina VII. The density of terminals in lamina IX was highest in the homonymous motor cell column. The terminal distribution areas of adjacent collaterals showed no overlap in the sagittal plane. Terminal branches carried one bouton terminal and up to six boutons en passage with an average of 1.8 terminals per terminal branch. Apparent axosomatic and axodendritic contacts were seen on small-sized and medium-sized neurons in laminae V-VI, medium-sized neurons in lamina VII, and large neurons in lamina IX. One motoneurons was contacted by an average of 3.3 terminals. In addition to the common features, Ia collaterals of various muscles of origin showed some differences in their trajectories in the ventral horn, and in their terminations in the gray matter.

Animals↗
PubMed1987

Trajectory of group Ia and Ib fibers from the hind-limb muscles at the L3 and L4 segments of the spinal cord of the cat.

Nineteen physiologically identified group Ia and five group Ib fibers at the L3 and L4 levels of the spinal cord originating from various hind-limb muscles were intraaxonally injected with horseradish peroxidase (HRP). The trajectories of the stained axons were reconstructed. They extended for distances of 8.6 mm-18.0 mm rostrocaudally. Ascending axons ran in various regions of the dorsal funiculus: The ascending axon from a toe muscle (3 microns in diameter) ran in the ventral most part of the paramedian region; those from shank muscles (3.0-5.0 microns) in both dorsal and ventral paramedian regions; those from thigh muscles (5.0-7.0 microns) in both the paramedian and the more lateral regions; and those from hip muscles (6.0-7.0 microns) in the lateral region. Main collaterals arising from the parent fiber were given off at intervals of 0.5-6.2 mm (mean 2.4 mm). Collaterals of a fiber from a toe muscle (1.0 micron in diameter) entered Clarke's column from the dorsomedial side and ramified mostly in the dorsomedial one-third of the column. Collaterals of fibers from shank muscles (1.0-2.0 microns) entered Clarke's column from the dorsal side and terminated in its middle parts as well as in laminae V-VII. Collaterals of fibers from thigh muscles (1.0-2.5 microns) passed lateral to or through the lateral part of Clarke's column and terminated in its ventrolateral part and in laminae V-VIII. Collaterals of fibers from hip muscles (1.5-2.5 microns) passed lateral to Clarke's column and ramified mostly in laminae VII-IX. As the muscle of origin became more proximal, the proportion of termination outside of Clarke's column progressively increased. Thus, the trajectory of group I fibers was somatotopically organized both in the dorsal funiculus and in the gray matter. The long axis of boutons ranged from 0.5 to 17 microns in Ia fibers and from 0.5 to 8 microns in Ib fibers. "Giant" Ia boutons (above 7 microns) were found both in and outside Clarke's column.

Animals↗
PubMed1989

Axonal trajectory and terminal distribution of inspiratory neurons of the dorsal respiratory group in the cat's medulla.

In Nembutal-anesthetized and artificially ventilated cats, we studied the morphological properties of the inspiratory neurons of the dorsal respiratory group (DRG) with HRP intracellular staining. A total of 37 neurons were stained and their axonal trajectories and terminal distribution in the medulla were analyzed. The somata were located predominantly in the ventrolateral region of the nucleus of the solitary tract and were distributed between 2,300 mum rostral and 700 mum caudal to the obex. Most (26/33) of the neurons tested were antidromically activated by the stimulation of the contralateral (n = 24) or ipsilateral (n = 2) cervical cord. To examine the existence of collateral branches in the brainstem, we traced axonal trajectories in 28 neurons. In most cases, the stem axons issuing from the cells of origin coursed ventrally and then turned medially to cross the midline without giving off any axon collaterals. However, six neurons had axonal collaterals in the brain stem ipsilateral to the somata. At least four types of collateralization were observed. The stem axon of the first type bifurcated at the area ipsilateral and ventral to the cell body. One branch crossed the midline to project to the spinal cord, and the other, thinner branch descended caudally in the ipsilateral medullary reticular formation without distributing any terminals. The axon of the second type projected to the contralateral spinal cord and distributed collateral branches with terminal boutons in the ipsilateral ventral respiratory group (VRG). The third type projected to the contralateral spinal cord and distributed terminal boutons in the medial part of the nucleus of the solitary tract (NTS) and its vicinity. The fourth type distributed numerous branches with terminal boutons in and around the ventral part of the NTS and the VRG area. This study indicates that some inspiratory neurons of the DRG influence not only spinal respiratory neurons but also medullary respiratory neurons in the vicinity of the DRG and the VRG.

Animals↗
PubMed1989

Distribution and trajectory of uncrossed axons in the optic nerves of pigmented and albino rats.

Ipsilaterally projecting axons in the optic nerve of the pigmented rat are limited to a roughly retinotopic location within the intraorbital segment of the nerve. However, immediately rostral to the chiasm they are widely dispersed. Here, the way in which this change in distribution arises is analysed by tracing individual fibers retrogradely labelled from the optic tract with horseradish peroxidase (HRP). A comparison is made between albino and pigmented animals. It is demonstrated that the change in this distribution occurs as a consequence of two types of shift in axon trajectory in the intracranial segment. Many axons change their location in the nerve gradually throughout this segment. However, in the proximal half of this region a number of axons also make abrupt changes in their trajectory by travelling at right angles across segments of the mediolateral axis of the nerve. These were seen in both the pigmented and albino animals. Although the albino has an abnormally small ipsilateral retinofugal pathway, the distribution of ipsilateral axons in the optic nerve is very similar to that seen in pigmented animals. Consequently, it is unlikely that position in the prechiasmatic nerve is related to the chiasmatic choice made by axons in this population.

Animals↗
PubMed2006

Branch to colony trajectory in a modular organism: pattern formation in the Indo-Pacific coral Stylophora pistillata.

The architecture of the colony in a branching coral is an iterative process in which new layers of calcium carbonate compile atop existing structures that remain unchanged. Colony growth and development, known as astogeny, is believed to be a continuous process, characterized by replication of lower rank unites, polyps, and branches. This study seeks to explore the genetic blueprint of branch-to-colony developmental trajectory in the branching coral Stylophora pistillata, within an astogeny period of 1 year. One hundred small branches (initially 2-4 cm long) were sampled from 10 colonies. A year later, 63 remaining colonies were analyzed for their architectural rules by using 15 morphometric parameters. Multivariate statistical tests were preformed. Cluster and two-dimensional nonmetric Multi-Dimensional Scaling analyses revealed that the 10 genotypes could be divided into two major morphometric groups and two intermediate groups, whereas SIMPER analyses (a similarity percentage test) on within-genet similarities showed high similarity between the ramets developed from each of the 10 genotypes. Although, at first, it seemed that different colonies exhibited variable and different architectural designs (each characterized by specific morphometric parameters), a comprehensive analysis revealed that all 10 coral genotypes exhibited a single common developmental plan that was characterized by a continuum of architectural design with several distinct stages. Each stage is marked by its own characteristic morphometric parameters. Changing of developmental rules during the trajectory from branch to coral colony may help the colony to cope better with environmental constraints.

Animals↗
PubMed2004

Hominins do not share a common postnatal facial ontogenetic shape trajectory.

This paper examines the hypothesis raised by recent studies that postnatal trajectories of shape change in the facial skeleton are parallel between, at least, chimpanzees, modern humans and also fossil hominins, specifically australopithecines and possibly Neanderthals. In contrast, other studies point to divergences in postnatal shape trajectories within diverse groups of primates. As such there is some debate regarding the relative contributions of pre and postnatal ontogeny to adult morphological differences. This paper presents a series of geometric morphometric studies of the ontogeny of facial shape in hominins with the specific aim of resolving these issues. The results indicate that many differences in facial shape between hominins are established prenatally, however highly significant divergences of postnatal facial ontogeny are found among living hominins. Our studies point to possible differences between the shape ontogeny of the Australopithecus africanus face and that of African apes on the one hand and humans on the other. However, sampling experiments indicate that the small sample size of available specimens of A. africanus does not permit any conclusions to be drawn regarding comparative shape ontogeny of the face.

Animals↗
PubMed1997

Chemotaxis by human neutrophils and their cytokineplasts treated with inhibitors of nitric oxide synthase: no suppression of orientation or trajectory.

Inhibitors of nitric oxide (NO) synthase are reported to inhibit both the adherence of polymorphonuclear leukocytes (PMN) to substrate and chemotaxis (directed locomotion) of PMN as determined in Boyden chamber assays. In the current study, we examined both human blood PMN and granule-poor motile cytoplasts derived from them (cytokineplasts, CKP), under direct microscopic observation with concomitant time-lapse video recording, for their ability to respond chemotactically to an erythrocyte destroyed by laser microirradiation. In this system we can observe directly and continuously the orientation and trajectory of PMN before, during, and after establishment of a chemotactic gradient. For both PMN and CKP we employed three different inhibitors of NO synthase (N(omega)-methyl-L-arginine, N-iminoethyl-L-ornithine, and diphenyleneiodonium) in at least twice the concentrations employed to inhibit chemotaxis of PMN in Boyden chambers or killing of bacteria in CKP. Although small differences in adhesion might not have been appreciated, treated PMN and CKP were each indistinguishable from untreated controls in their ability to orient in a newly created chemotactic gradient and in their trajectories toward the chemotactic target.

Arginine↗
PubMed2001

Prospective stereotaxy: a novel method of trajectory alignment using real-time image guidance.

PURPOSE: To describe prospective stereotaxy, a novel method of trajectory alignment that works in real-time. MATERIALS AND METHODS: Prospective stereotaxy was used in minimally-invasive neurosurgical procedures in 74 patients since February 1999. This methodology differs from framed and frameless stereotaxy, both of which are based on retrospective data. Rather, prospective stereotaxy uses real-time MR images to align a surgical trajectory. RESULTS: Phantom tests and clinical procedures in all patients were successfully performed using prospective stereotaxy. In all cases, surgical targets were accessed, and the diagnostic yield of neurobiopsy using prospective stereotaxy was 100%. CONCLUSION: Prospective stereotaxy is applicable to all cross-sectional imaging, and is particularly useful for MR- and CT-guided interventions. The method is simple, reproducible, and accurate in surgical targeting for neurobiopsy and electrode placement. It does not require cumbersome stereotactic frames or expensive optical detectors, and it offers immediate entry into the field of interventional MR with cylindrical MR scanners.

Biopsy, Needle↗
PubMedDate not supplied

Target definition and trajectory optimization for interactive MR-guided biopsies of brain tumors in an open configuration MRI system.

We present an imaging strategy for planning and guiding brain biopsies in an open configuration MR system. Preprocedure imaging was performed in a 1.5-T MR system and was designed to provide, in a clinically efficient manner, high resolution anatomical and functional/physiologic information for precise definition and tissue characterization of the target, aiming at optimization of the biopsy trajectory for planning a safe and accurate procedure. The interventions were performed in a .5-T open bore magnet, and imaging was optimized to provide the imaging quality and temporal resolution necessary for performing the procedure interactively in near real time. Brain biopsies of 21 patients were performed in a 10-month period. Segmentation and surface rendering analysis of the lesions and vascular structures and dynamic MR perfusion and cortical activation studies provided an efficient and comprehensive way to appreciate the relationship of the target to surrounding vital structures, improved tissue characterization and definition of the tumor margins, and demonstrated the location of essential cortex, allowing appropriate placement of the burr hole and choice of optimal trajectory. Interactive protocols provided good visualization of the target and the interventional devices and offered the operator real-time feedback and control of the procedure. No complications were encountered. Advanced methods of image acquisition and processing for accurate planning of interventional brain procedures and interactive imaging with MR guidance render feasible the performance of safe and accurate neurointerventional procedures.

Adult↗
PubMed2005

A modified projection reconstruction trajectory for reduction of undersampling artifacts.

PURPOSE: To reduce undersampling artifacts for a given number of repetitions of the projection reconstruction (PR) sequence by modifying its k-space trajectory to sample more mid-frequencies while reducing the sampling coverage of the peripheral spatial frequencies. MATERIALS AND METHODS: The single k-space spoke measured per repetition in the standard PR was modified so that one complete and two partial spokes were measured per repetition but with decreased k-space extent. The point spread functions (PSFs) and undersampling artifacts of the modified PR were compared with those of the standard PR for various numbers of projections. Phantom and in vivo images were used to assess the relative performance. RESULTS: PSF analysis indicated that the modified PR method provided reduced undersampling artifacts with somewhat reduced spatial resolution. The phantom and in vivo images corroborated this. CONCLUSION: The modified PR trajectory provides reduced undersampling artifact vs. the standard PR, particularly when the number of projections is limited and the artifact level is high.

Artifacts↗
PubMed2002

Reconstruction of MR images from data acquired on an arbitrary k-space trajectory using the same-image weight.

A sampling density compensation function denoted "same-image (SI) weight" is proposed to reconstruct MR images from the data acquired on an arbitrary k-space trajectory. An equation for the SI weight is established on the SI criterion and an iterative scheme is developed to find the weight. The SI weight is then used to reconstruct images from the data calculated on a random trajectory in a numerical phantom case and from the data acquired on interleaved spirals in an in vivo experiment, respectively. In addition, Pipe and Menon's weight (MRM 1999;41:179-186) is also used in the reconstructions to make a comparison. The images obtained with the SI weight were found to be slightly more accurate than those obtained with Pipe's weight.

Brain↗
PubMed1996

Frequency resolved single-shot MR imaging using stochastic k-space trajectories.

A new single-shot stochastic imaging technique with a random k-space path that provides very selective filtering with respect to chemical shift or off-resonance signals of the investigated tissue is proposed. It is demonstrated that in stochastic imaging only on-resonance compartments are visible whereas frequency shifted compartments cancel to noise that is distributed over the whole image. This method can be used as a single-shot chemical shift selective imaging technique and allows to calculate frequency resolved spectra for each spatial position of the image based on a single signal acquisition. The single-shot stochastic imaging sequence makes high demands on the gradient system and the theoretical k-space trajectory is distorted by imperfect gradient performance. Therefore an additional k-space guided imaging technique that uses the true, measured k-space trajectory to correct artifacts generated by eddy currents and delay times of the rapid switched gradients is presented. In vitro and in vivo measurements demonstrate the successful implementation of single-shot stochastic imaging on a conventional MR scanner with unshielded gradient systems.

Artifacts↗