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PubMed2006

Influence of hydrodynamic conditions on the start-up of methanogenic inverse turbulent bed reactors.

The influence of hydrodynamic conditions on the start-up phase of an inverse turbulent bed bioreactor was investigated. Two identical reactors, differing only by the gas velocity ensuring the carrier fluidization and generating the main hydrodynamic strengths (attrition), were monitored. Regarding the first 96 days, the experiments showed better performances for the reactor having the lowest hydrodynamic strengths. These results were correlated to lower attached biomass and higher biofilm specific removal rate for the reactor subjected to strong hydrodynamic strengths. Once the start-up was completed and the reactor stabilized at an organic loading rate of 6g(COD)L(-1)d(-1), the same hydrodynamic strengths were applied (gas velocity was equalized). The results proved that hydrodynamic conditions make it possible to control the biofilm characteristics. Consequently, it should be recommended to apply minimal strengths to enhance the biofilm growth during the early start-up phase, and then to increase them to control biofilm thickness and to optimize the reactor performances.

Bacteria, Anaerobic↗
PubMed1995

Effect of hydrodynamic interactions on the diffusion of integral membrane proteins: diffusion in plasma membranes.

Tracer diffusion coefficients of integral membrane proteins (IMPs) in intact plasma membranes are often much lower than those found in blebbed, organelle, and reconstituted membranes. We calculate the contribution of hydrodynamic interactions to the tracer, gradient, and rotational diffusion of IMPs in plasma membranes. Because of the presence of immobile IMPs, Brinkman's equation governs the hydrodynamics in plasma membranes. Solutions of Brinkman's equation enable the calculation of short-time diffusion coefficients of IMPs. There is a large reduction in particle mobilities when a fraction of them is immobile, and as the fraction increases, the mobilities of the mobile particles continue to decrease. Combination of the hydrodynamic mobilities with Monte Carlo simulation results, which incorporate excluded area effects, enable the calculation of long-time diffusion coefficients. We use our calculations to analyze results for tracer diffusivities in several different systems. In erythrocytes, we find that the hydrodynamic theory, when combined with excluded area effects, closes the gap between existing theory and experiment for the mobility of band 3, with the remaining discrepancy likely due to direct obstruction of band 3 lateral mobility by the spectrin network. In lymphocytes, the combined hydrodynamic-excluded area theory provides a plausible explanation for the reduced mobility of sIg molecules induced by binding concanavalin A-coated platelets. However, the theory does not explain all reported cases of "anchorage modulation" in all cell types in which receptor mobilities are reduced after binding by concanavalin A-coated platelets. The hydrodynamic theory provides an explanation of why protein lateral mobilities are restricted in plasma membranes and why, in many systems, deletion of the cytoplasmic tail of a receptor has little effect on diffusion rates. However, much more data are needed to test the theory definitively. We also predict that gradient and tracer diffusivities are the same to leading order. Finally, we have calculated rotational diffusion coefficients in plasma membranes. They decrease less rapidly than translational diffusion coefficients with increasing protein immobilization, and the results agree qualitatively with the limited experimental data available.

Animals↗
PubMed2003

On-chip hydrodynamic chromatography separation and detection of nanoparticles and biomolecules.

For the first time, on-chip planar hydrodynamic chromatography is combined with UV absorption detection. This technique is suitable for size characterization of synthetic polymers, biopolymers, and particles. Possible advantages of an on-chip hydrodynamic chromatography system over conventional techniques, such as size exclusion chromatography, and field-flow fractionation are fast analysis, high efficiency, reduced solvent consumption, and easy temperature control. The hydrodynamic separations are performed in a planar configuration realized in fused silica using a mixture of fluorescent and nonfluorescent polystyrene particles with sizes ranging from 26 to 155 nm. The planar chip configuration consists of a 1-microm-high, 0.5-mm-wide, and 69-mm-long channel, an integrated 150-pL injection structure, and a 30-microm-deep and 30-microm-wide detection cell, suitable for UV absorption detection. By combination of the separation data obtained in the new fused-silica chip with those obtained using a previously presented planar hydrodynamic chromatography chip, which was realized using silicon and glass microtechnology, a description of the retention and dispersion behavior of planar hydrodynamic chromatography is obtained. Especially the influence of the sidewalls on the dispersion is investigated. Furthermore a hydrodynamic separation within 70 s of several biopolymers is shown in the glass-silicon chip.

Chromatography, Gel↗
PubMed2005

An electrokinetic/hydrodynamic flow microfluidic CE-ESI-MS interface utilizing a hydrodynamic flow restrictor for delivery of samples under low EOF conditions.

A hydrodynamic flow restrictor (HDR) that is used to combine electrokinetic and hydrodynamic flow streams has been fabricated in a microfluidic channel by laser micromachining. Combining electrokinetic and hydrodynamic flow streams is challenging in microfluidic devices, because the hydrodynamic flow often overpowers the electrokinetic flow, making it more difficult to use low electroosmotic flow in the electrokinetic portion of the system. The HDR has been incorporated into a capillary electrophoresis-mass spectrometry interface that provides continuous introduction of a make-up solution and negates the hydrodynamic backpressure in the capillary electrophoresis channel to the extent that low EOF can be utilized. Moreover, the hydrodynamic backpressure is sufficiently minimized to allow coatings that minimize EOF to be used in the electrokinetically driven channel. Such coatings are of great importance for the analysis of proteins and other biomolecules that adsorb to charged surfaces.

Electrophoresis, Capillary↗
PubMed2002

Hydrodynamic flows around tablets in different pharmacopeial dissolution tests.

We investigated the hydrodynamic flows around tablets during several pharmacopeial dissolution tests: the rotating basket (RB), paddle (PD), flow-through cell (FT), and disintegration (DI) tests. The determination of hydrodynamic flow was based on the dissolution rate of United States Pharmacopeial salicylic acid nondisintegrating calibrators, and showed that, compared with the PD and RB methods, the FT method produced a lower hydrodynamic flow value whereas the DI method produced a higher value. The hydrodynamic flows during the PD and RB tests appeared to be similar at the same rotational speed, although the flow patterns around the tablet differed; with the RB method, homogeneous dissolution occurred from all surfaces of the tablet, while with the PD method, dissolution from the lower surface was slower. The use of a sinker seemed to enhance dissolution from the lower surface. Such differences in hydrodynamic flow could explain the apparently different dissolution behaviors of disintegrating prednisone and nondisintegrating acetaminophen tablets when assessed by the PD and RB methods. These differences in hydrodynamic flow between in vitro tests should be considered when choosing dissolution tests for studying in vitro/in vivo relationships and for quality control purposes.

Anti-Infective Agents↗
PubMed2003

3-D model of a total hip replacement in vivo providing hydrodynamic pressure and film thickness for walking and bicycling.

Formulation of a 3-D lubrication simulation of a total hip replacement in vivo is presented using a finite difference approach. The goal is to determine if hydrodynamic lubrication is taking place, how thick the joint fluid film is and over what percentage of two gait cycles, (walking and bicycling), the hydrodynamic lubricating action is occurring, if at all. The assumption of rigid surfaces is made, which is conservative in the sense that pure hydrodynamic lubrication is well known to predict thinner films than elasto-hydrodynamic lubrication (EHL) for the same loading. The simulation method includes addressing the angular velocity direction changes and accurate geometry configuration for the acetabular cup and femoral head components and provides a range of results for material combinations of CoCrMo-on-UHMWPE, CoCrMo-on-CoCrMo, and alumina-on-alumina components. Results are in the form of the joint fluid film pressure distributions, load components and film thicknesses of the joint fluid, for the gait cycles of walking and bicycling. Results show hydrodynamic action occurs in only about 10% of a walking gait cycle and throughout nearly 90% of a bicycling gait. During the 10% of the walking cycle that develops hydrodynamic lubrication, the minimum fluid film thicknesses are determined to be between 0.05 micron and 1.1 microns, while the range of film thicknesses for bicycling is between 0.1 micron and 1.4 microns, and occurs over 90% of the bicycling gait. Pressure distributions for these same periods are in the range of 2 MPa to 870 MPa for walking and 1 MPa to 24 MPa for bicycling.

Bicycling↗
PubMed2004

Comparison of prosthetic valve hydrodynamic function: objective testing using statistical multilevel modeling.

BACKGROUND AND AIM OF THE STUDY: The performance of novel prosthetic heart valves is assessed using in-vitro hydrodynamic function tests. The study aim was to examine the problem of objective discrimination of hydrodynamic performance to determine significant differences between valve designs, and illustrate proposed methodology using data collected from five different polyurethane tri-leaflet valve designs. METHODS: Two engineering designs were manufactured with leaflets of the same polyurethane (GE, LE); design L was manufactured using three further leaflet materials of differing material modulus (LL, L4, L5). Six valves were made in each design, each tested at five flow rates in a standard hydrodynamic test rig, with five test replications for each valve. The data were analyzed using multilevel statistical modeling methods, allowing simultaneous comparison of multiple regression lines describing valve performance. The multilevel model is hierarchical in structure, in this case with two levels of data, describing individual valves at level 2 and test replicates at level 1. In all cases, the multilevel model uses the hydrodynamic function measure of interest, e.g. mean pressure gradient or leakage, with logarithmic transformation as required as the dependent variable, Y. The independent variable, X, is, in all cases, the natural logarithm of the RMS flow measured through the valve. RESULTS: The two-design multilevel model enabled quantitative discrimination of designs GE and LE, showing that design GE had significantly better hydrodynamic function overall than design LE in this case (mean pressure gradient was estimated as 0.93 mmHg lower at low cardiac output, 14.74 mmHg lower at 9.6 l/min). The five-design multilevel model showed clearly the relatively poor hydrodynamic performance of designs L4 and L5 compared with others. The procedure was straightforward, and produced a statistical comparison among valve designs that is not easily achieved by other means. CONCLUSION: This methodology provides a useful means of objective assessment of valve function for valve developers. Variance estimates provided by the analysis also provide a basis for quality control of valve production and testing.

Equipment Failure Analysis↗
PubMed2003

Size and shape of the repetitive domain of high molecular weight wheat gluten proteins. II. Hydrodynamic studies.

This study describes the hydrodynamic properties of the repetitive domain of high molecular weight (HMW) wheat proteins, which complement the small-angle scattering (SANS) experiments performed in the first paper of this series. The sedimentation coefficients, s(0), and diffusion coefficients, D(0), were obtained from the homologous HMW proteins dB1 and dB4 that were cloned from the gluten protein HMW Dx5, and expressed in Escherichia coli. Monodisperse conditions for accurate determination of s(0) and D(0), were obtained by screening a series of buffers using dynamic light scattering. For the first time, hydrodynamic parameters were obtained on monodisperse samples that enabled the determination of the monomeric size and shape. The hydrodynamic values determined on dB1 and dB4 were used to test the worm-like chain (WLC) model that was proposed in the SANS studies. The successful matching of two separately obtained hydrodynamic parameters of dB1 and dB4 using the WLC model provides further evidence for the WLC model. The small discrepancy between the hydrodynamic and scattering data, possibly coming from the excluded volume effect, was compensated by a solvation layer of 1-2 water molecules thick around the protein in the WLC model. The solvation of the central domain is much higher than those of the terminal domains of the HMW subunits. This difference emphasizes the dual role of HMW wheat gluten proteins in water-binding and aggregation.

Biopolymers↗
PubMed1999

Chemical orientation to food by the crayfish Orconectes rusticus: influence of hydrodynamics.

Many different organisms orient to chemicals in a variety of habitats. Each of these habitats has a unique hydrodynamic environment that is dependent upon the structure of that habitat. Differences in the hydrodynamics (i.e. turbulence) of an environment will be reflected in the fine-scale structure of chemical signals. To determine what role dispersion dynamics play in influencing orientation behaviour, we studied crayfish searching for food sources in different artificial streams. Streams differed only in substrate composition (sand or cobbles), and the hydrodynamics associated with different substrates were quantified. A detailed analysis of orientation paths showed that crayfish could orient to food sources in streams with either substrate. The most parsimonious explanation is that animals are using information contained in the spatial and temporal distribution of chemicals in the flow to make directional decisions. Crayfish located the source more quickly, spent more time moving, and walked faster while orienting in streams having a cobble substrate compared with those having a sand substrate. These differences between substrates were not seen in control streams. These results show that the hydrodynamics associated with chemical signal structure can greatly influence the temporal properties of orientation to food sources. For crayfish, differences in the turbulent structure of flow may actually increase orientation efficiency by decreasing search time. On a broader scale, these results show that it is important to quantify orientation behaviour in a number of hydrodynamically different environments. Copyright 1999 The Association for the Study of Animal Behaviour.

Journal Article↗
PubMed2003

Conformation of heparin studied with macromolecular hydrodynamic methods and X-ray scattering.

The hydrodynamic characteristics of heparin fractions in a 0.2 M NaCl solution have been determined. Experimental values varied over the following ranges: the sedimentation coefficient (at 20.0 degrees C), 1.3<s0x10(13)<3.2 s; the Gralen coefficient (sedimentation concentration-dependence parameter), 10<ks<70 cm3 g(-1); the translational diffusion coefficient, 3.9< D0x10(7)<15.4 cm2 s(-1); the intrinsic viscosity, 7.9<[eta]<40 cm3 g(-1). Combination of s0 with D0 using the Svedberg equation yielded molecular weights in the range 3.9<Mx10(-3)<37 g mol(-1). The value of the mass per unit length of the heparin molecule, ML, was determined using the theory of hydrodynamic properties of a weakly bending rod, giving ML=570 +/- 50 g nm(-1) mol(-1). The equilibrium rigidity, Kuhn segment length (A=9 +/- 2 nm) and hydrodynamic diameter (d=0.9 +/- 0.1 nm) of heparin were evaluated on the basis of the worm-like coil theory without the excluded volume effect, using the combination of hydrodynamic data obtained from fractions of different sizes. Small-angle X-ray scattering for three heparin fractions allowed an estimate for the cross-sectional radius of gyration as 0.43 nm; from the evolution with the macromolecule contour length of the radius of gyration, a value for the Kuhn segment length of 9 +/- 1 nm was obtained. A good correlation is thus observed for the conformational parameters of heparin from hydrodynamic and X-ray scattering data. These values describe heparin as a semi-rigid polymer, with an equilibrium rigidity that is essentially determined by a structural component, the electrostatic contribution being negligible in 0.2 M NaCl.

Biopolymers↗
PubMed2005

The hydrodynamics-based procedure for controlling the pharmacokinetics of gene medicines at whole body, organ and cellular levels.

Hydrodynamics-based gene delivery, involving a large-volume and high-speed intravenous injection of naked plasmid DNA (pDNA), gives a significantly high level of transgene expression in vivo. This has attracted a lot of attention and has been used very frequently as an efficient, simple and convenient transfection method for laboratory animals. Until recently, however, little information has been published on the pharmacokinetics of the injected DNA molecules and of the detailed mechanisms underlying the efficient gene transfer. We and other groups have very recently demonstrated that the mechanism for the hydrodynamics-based gene transfer would involve, in part, the direct cytosolic delivery of pDNA through the cell membrane due to transiently enhanced permeability. Along with the findings in our series of studies, this article reviews the cumulative reports and other intriguing information on the controlled pharmacokinetics of naked pDNA in the hydrodynamics-based gene delivery. In addition, we describe various applications reported so far, as well as the current attempts and proposals to develop novel gene medicines for future gene therapy using the concept of the hydrodynamics-based procedure. Furthermore, the issues associated with the clinical feasibility of its seemingly invasive nature, which is probably the most common concern about this hydrodynamics-based procedure, are discussed along with its future prospects and challenges.

Animals↗
PubMed2005

Hydrodynamics of an ideal aggregate with quadratically increasing permeability.

In this study, we consider the ideal aggregate with quadratically increasing permeability kappa = k2r2 and derive the analytical expression of the stream function within the porous aggregate by incorporating the Brinkman and continuity equations. The hydrodynamic properties of the aggregate are investigated by taking account of the hydrodynamic radius, settling velocity, and fluid collection efficiency, which are found to be solely dependent on the permeability prefactor k2. The fractal dimension Df and prefactor k2 of the ideal aggregate are found to be 5/3 (=1.67) and 0.20, respectively, and well describe the hydrodynamics of aggregates formed in the diffusion-limited-cluster-aggregation (DLCA) regime. More important, hydrodynamic similarity between the ideal aggregate and impermeable solid sphere is discovered in terms of variations of the hydrodynamic radius, settling velocity, and fluid collection efficiency with respect to the aggregate radius.

Journal Article↗
PubMed2005

Experimental analysis of floc size distributions in a 1-L jar under different hydrodynamics and physicochemical conditions.

This study focuses on the relation among hydrodynamics, physicochemical conditions, and floc size. During ortho-kinetic flocculation, the floc size is controlled by a balance between hydrodynamic stress and aggregate strength. Special attention was paid to the influence of a hydrodynamic sequencing on both the aggregate strength and the flocculation processes. Experimental research was conducted in a 1-L jar for two different pH values. The hydrodynamic sequencing was made up of successive slow and rapid mixing periods, and different slow mixing intensities were studied. First, the large floc size was shown to decrease with increasing velocity gradient (G), with an expected trend (d proportional variant epsilon(-1/4)). Then, the aggregate strength was shown to depend on two main factors: the flocculation history and the physicochemical conditions, which control the cohesion forces between primary particles. Finally, flocculation processes are discussed in terms of aggregation and breakup phenomena, with relation to local hydrodynamics and physicochemical conditions.

Journal Article↗
PubMed2005

Combining hydrodynamics and molecular kinetics to predict dewetting between a small bubble and a solid surface.

This paper examined the dewetting between a small air bubble and a solid surface in deionised water. Hydrodynamics was used in conjunction with surface molecular kinetics to model and predict the velocity of the moving contact line as a function of the dynamic macroscopic contact angle. The dewetting hydrodynamics was modelled following the approach developed specifically for drops and bubbles using the (absolute) coordinate system with the origin located at the centre of the contact area, which does not move with the moving contact line. The model provides accurate corrections unavailable in the generic hydrodynamic theories developed by Voinov and Cox, and removes the need for a macroscopic length scale employed in their generic theories. Molecular kinetics was used to determine the contact angle of the inner region close to the contact line, where the hydrodynamic approach breaks down due to the singularity. Unlike the generic hydrodynamic theories, the inner (microscopic) angle in our combined model is not a constant (a fitting parameter) but is a function of the moving contact line velocity and other molecular properties of the interfaces. The combined model agreed with the experimental data and produced physically consistent values for the slip length, molecular jumping distance and frequency. The dissolved gases accumulated at the non-wetting solid-liquid interface may influence the slip length.

Journal Article↗
PubMed1996

Fluid shifts across human dentine in vitro in response to hydrodynamic stimuli.

Most authorities agree that the hydrodynamic theory of dentine sensitivity best explains the stimulus-response relations of most painful stimuli. However, as the usual hydrodynamic stimuli are so different, it has been impossible to compare them. The equivalency of hydrodynamic stimuli can be evaluated from measurements of the fluid movement induced in vitro and relating this to the hydraulic conductance (Lp) of the same dentine specimen. From this determination, a common denominator is obtained which is equivalent to the hydrostatic pressure that would be required to cause the same magnitude of fluid movement. The purpose of this study was to measure the direction and magnitude of fluid shifts across dentine in extracted human crown segments with a flat, dentine occlusal surface in response to the following hydrodynamic stimuli; air blast, 56 degrees C water, 2 degrees C water, tactile and osmotic. In acid-etched superficial dentine, which simulates hypersensitive dentine, the largest to the smallest fluid flows obtained were: hot > cold > air blast > osmotic > tactile. When these were converted to equivalency units, the ranking of stimuli from strongest to weakest was hot > cold > air blast > osmotic > tactile. This new approach to comparing hydrodynamic stimuli should be verified in vivo.

Acid Etching, Dental↗
PubMed1995

Electrostatic and hydrodynamic orientational steering effects in enzyme-substrate association.

Diffusional encounters between a dumbbell model of a cleft enzyme and a dumbbell model of an elongated ligand are simulated by Brownian dynamics. The simulations take into account electrostatic and hydrodynamic interactions between the molecules. It is shown that the primary effect of inclusion of hydrodynamic interactions into the simulation is an overall decrease in the rate constant. Hydrodynamic orientational effects are of modest size for the systems considered here. They are manifested when changes in the rate constants for diffusional encounters favored by hydrodynamic interactions are compared with those favored by electrostatic interactions as functions of the overall strength of electrostatic interactions. The electrostatic interactions modify the hydrodynamic torques by modifying the drift velocity of the substrate toward the enzyme. We conclude that simulations referring only to electrostatic interactions between an enzyme and its ligand may yield rate constants that are somewhat (e.g., 20%) too high, but provide realistic descriptions of the orientational steering effects in the enzyme-ligand encounters.

Algorithms↗
PubMed1995

Effect of hydrodynamic interactions on the diffusion of integral membrane proteins: tracer diffusion in organelle and reconstituted membranes.

A persistent discrepancy exists between theoretical predictions and experimental observations for the diffusion coefficients of integral membrane proteins in lipid bilayers free of immobilized proteins. Current thermodynamic theories overestimate tracer diffusion coefficients at high area fractions. We explore the hypothesis that the combined effect of hydrodynamic and thermodynamic interactions reconciles theory with experiment. We have determined previously the short- and long-time tracer diffusivities, Ds and Dl, respectively, of integral membrane proteins in lipid bilayers as a function of their area fraction, phi. The results are based on two-particle hydrodynamic and thermodynamic interactions and are precise to O(phi). Here we extend the results for Dl to high phi by combining the hydrodynamic results for Ds into theories for Dl based on many-particle thermodynamic interactions. The results compare favorably with the experimental measurements of Dl as a function of protein area fraction for bacteriorhodopsin in reconstituted membranes and for complex III of the mitochondrial inner membrane. The agreement suggests that both hydrodynamic and thermodynamic interactions are important determinants of diffusion coefficients of proteins in lipid bilayers. Additional experiments are required to verify the role of hydrodynamic interactions in protein diffusion in reconstituted systems.

Bacteriorhodopsins↗
PubMed2002

Hydrodynamic function of polyurethane prosthetic heart valves: influences of Young's modulus and leaflet thickness.

The development of flexible polyurethane heart valves has been hindered by material degradation in vivo. Low modulus polyurethane leaflets are regarded as desirable to achieve good hydrodynamic function. However, low modulus materials may suffer high strain accumulation, hence poor durability. Higher modulus materials may improve durability, but may have poor hydrodynamic function. This study examines the hydrodynamic behaviour of biostable polyurethane valves, varying Young's modulus from 5 to 63.6 MPa and mean leaflet thickness from 48-238 microm. Parameters studied included mean pressure gradient, energy losses and regurgitation over 5 equivalent cardiac outputs (3.6, 4.9, 6.4, 8.0 and 9.61 min(-1)) At low cardiac output, modulus was not significantly correlated with any parameter of valve opening. At 9.61 min(-1), modulus significantly influenced mean pressure gradient (p = 0.033). Mean leaflet thickness significantly correlated with mean pressure gradient and energy losses during forward flow at all cardiac outputs (p<0.001). This study demonstrates that, over a wide range of moduli, valve hydrodynamic function is not affected significantly by the material modulus. Leaflet thickness is a highly significant factor. Higher modulus elastomers in a range up to 32.5 MPa may be useful in prosthetic heart valve leaflet manufacture, retaining good hydrodynamic function while potentially extending the lifetime of the valve.

Heart Valve Prosthesis↗