Bioinformatics analysis of miR-2861 and miR-5011-5p that function as potential tumor suppressors in colorectal carcinogenesis.

Alper Aytekin; Hikmet Kadakal; Deniz Mihcioglu; Turkan Gurer

doi:10.1186/s12920-024-02080-6

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Bioinformatics analysis of miR-2861 and miR-5011-5p that function as potential tumor suppressors in colorectal carcinogenesis.

Alper Aytekin·Hikmet Kadakal·Deniz Mihcioglu·Turkan Gurer

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Abstract

BACKGROUND: The study aimed to was to investigate the relationship between miR-2861, miR-5011-5p, and colorectal carcinogenesis. METHOD: In the present study, it was isolated RNA from both the tumor and non-tumor tissue of a total of 80 CRC patients and after synthesizing the cDNA, it was performed qRT-PCR to determine the expression levels of miR‑2861 and miR‑5011-5p. In addition, it was predicted that dysregulated miRNAs targets, pathways and functional gene annotations that may be important in colorectal carcinogenesis using KEGG pathway and GO analysis. RESULTS: The resulting data revealed that both expression levels of miR-2861 and miR-5011-5p were significantly decreased in tumor tissues compared with non-tumor tissues of CRC patients. The GO and KEGG pathway analysis showed that miR-2861 and miR-5011-5p may participate in multiple the biological process, cellular components, and molecular function subcategories such as mitotic cell cycle, regulation of small GTPase mediated signal transduction, cell death, and acid binding transcription factor activity. It was also revealed that target genes of miRNAs can be found in signaling pathways such as TGF-beta, Rap1, Ras, cAMP, Wnt, mTOR and, PI3K-Akt signaling pathways. CONCLUSION: These findings imply that miR-2861 and miR-5011-5p might function as tumor suppressors in the development of CRC.

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MicroRNAs Humans Colorectal Neoplasms Computational Biology Carcinogenesis Genes, Tumor Suppressor Gene Expression Regulation, Neoplastic Female Male Middle Aged Signal Transduction Aged Bioinformatics analysis Colorectal cancer RT-qPCR microRNA microRNA expression Journal Article Research Support, Non-U.S. Gov't

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Alper Aytekin, Hikmet Kadakal, Deniz Mihcioglu, Turkan Gurer. 2025-01-02. Bioinformatics analysis of miR-2861 and miR-5011-5p that function as potential tumor suppressors in colorectal carcinogenesis.. https://doi.org/10.1186/s12920-024-02080-6

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