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PubMed · 14960472

The Jalview Java alignment editor.

Michele Clamp·James Cuff·Stephen M Searle·Geoffrey J Barton
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Abstract

Multiple sequence alignment remains a crucial method for understanding the function of groups of related nucleic acid and protein sequences. However, it is known that automatic multiple sequence alignments can often be improved by manual editing. Therefore, tools are needed to view and edit multiple sequence alignments. Due to growth in the sequence databases, multiple sequence alignments can often be large and difficult to view efficiently. The Jalview Java alignment editor is presented here, which enables fast viewing and editing of large multiple sequence alignments.

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AlgorithmsDatabase Management SystemsDocumentationHypermediaInformation Storage and RetrievalSequence AlignmentSequence Analysis, DNASoftwareUser-Computer InterfaceWord ProcessingJournal Article

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Michele Clamp, James Cuff, Stephen M Searle, Geoffrey J Barton. 2004-01-22. The Jalview Java alignment editor.. https://doi.org/10.1093/bioinformatics%2Fbtg430

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