Biomedical subjects

R A Kemp

Publications and source records attributed to R A Kemp.

At least 19 recordsLinked to original sources

PubMed2002

Weaning, yearling, and preharvest ultrasound measures of fat and muscle area in steers, bulls, and heifers.

Longissimus muscle area and fat thickness were measured following weaning, at yearling, and prior to harvest using real-time ultrasound, and corresponding carcass measurements were recorded 3 to 7 d following the preharvest scan in composite steers (n = 116, 447 +/- 19 d), bulls (n = 224, 521 +/- 11 d), and heifers (n = 257,532 +/- 12 d). Although fat deposition was limited in bulls and heifers from weaning to yearling, coefficients of variation ranged from 8.46 to 13.46% for muscle area, and from 27.55 to 38.95% for fat thickness, indicating that significant phenotypic variance exists across genders. Residual correlations, adjusted for the effects of year of birth, gender, and age at measurement, were high and ranged from 0.79 to 0.87 among ultrasound and carcass measures of muscle area. Residual correlations among ultrasound and carcass measures of fat thickness were also high, ranging from 0.64 to 0.86. Weaning and/or yearling ultrasound muscle area yielded similarly accurate predictions of carcass muscle area. Yearling ultrasound fat thickness accounted for 13% more of the observed variance in carcass fat thickness than the weaning ultrasound measure in single-trait prediction models. When both weaning and yearling ultrasound measures were used to predict carcass fat thickness, partial R2 values were 0.15 and 0.61 for weaning and yearling ultrasound fat thickness, respectively. The difference between predicted and carcass measures with respect to muscle area (fat thickness) was less than 6.45 cm2 (2.5 mm) for 80.2 to 88.9% (90.3 to 95%) of animals. Preharvest ultrasound measures yielded standard errors of prediction of less than 4.95 cm2 for muscle area and 1.51 mm or less for fat thickness. These results indicate that ultrasound measures taken between weaning and yearling provide accurate predictors of corresponding carcass traits in steers, bulls, and heifers.

Adipose Tissue↗

PubMed2002

Genetic evaluation of carcass yield using ultrasound measures on young replacement beef cattle.

Live weight and ultrasound measures of fat thickness and longissimus muscle area were available on 404 yearling bulls and 514 heifers, and carcass measures of weight, longissimus muscle area, and fat thickness were available on 235 steers. Breeding values were initially estimated for carcass weight, longissimus muscle area, and fat thickness using only steer carcass data. Breeding values were also estimated for weight and ultrasound muscle area and fat thickness using live animal data from bulls and heifers, with traits considered sex-specific. The combination of live animal and carcass data were also used to estimate breeding values in a full animal model. Breeding values from the carcass model were less accurate and distributed more closely around zero than those from the live data model, which could at least partially be explained by differences in relative amounts of data and in phenotypic mean and heritability. Adding live animal data to evaluation models increased the average accuracy of carcass trait breeding values 91, 75, and 51% for carcass weight, longissimus muscle area, and fat thickness, respectively. Rank correlations between breeding values estimated with carcass vs live animal data were low to moderate, ranging from 0.16 to 0.43. Significant rank changes were noted when breeding values for similar traits were estimated exclusively with live animal vs carcass data. Carcass trait breeding values estimated with both live animal and carcass data were most accurate, and rank correlations reflected the relative contribution of carcass data and their live animal indicators. The addition of live animal data to genetic evaluation of carcass traits resulted in the most significant carcass trait breeding value accuracy increases for young replacements that had not yet produced progeny with carcass data.

Adipose Tissue↗

PubMed2001

Tumor-specific Tc1, but not Tc2, cells deliver protective antitumor immunity.

We investigated whether secretion of multiple cytokines by CD8+ T cells is associated with improved protection against tumor challenge. We show that antitumor immunity induced by immunization with dendritic cells and a MHC class I-binding tumor peptide are dependent on secretion of IFN-gamma but not IL-4 or IL-5 by host cells. To further address the role of IL-4 and IL-5 in antitumor immunity, tumor-specific TCR-transgenic CD8+ T cells were activated in vitro to generate cytotoxic T (Tc) 1 cells that secrete high IFN-gamma and no IL-4 or IL-5 or Tc2 cells that secrete IL-4, IL-5, and some IFN-gamma. Both cell types killed target cells in vitro. Tc1 and Tc2 cells were adoptively transferred into syngeneic hosts, and their ability to protect against tumor challenge was compared. Tc1 cells were able to significantly delay tumor growth, whereas Tc2 cells or Tc2 cells from IFN-gamma(-/-) donors had no effect. This was due to neither the inability of Tc2 cells to survive in vivo or to migrate to the tumor site nor their inability to secrete IL-4 and/or IL-5 in the presence of limiting amounts of anti-CD3. However, IFN-gamma secretion by Tc2 cells was triggered inefficiently by restimulation with Ag compared with anti-CD3. We conclude that the ability to secrete "type 2" cytokines, and cytotoxic ability, have a limited role in antitumor immune responses mediated by CD8+ T cells, whereas the capacity to secrete high amounts of IFN-gamma remains the most critical antitumor effector mechanism in vivo.

Animals↗

PubMed2001

Gene microarrays reveal extensive differential gene expression in both CD4(+) and CD8(+) type 1 and type 2 T cells.

An important subdivision of effector T cells can be made based on patterns of cytokine production and functional programs. Type 1 T cells produce IFN-gamma and protect against viral pathogens, whereas type 2 cells produce cytokines such as IL-4 and IL-5 and protect against large extracellular parasites. Both CD4(+) and CD8(+) T cells can be polarized into type 1 or type 2 cytokine-secreting cells, suggesting that both populations play a regulatory role in immune responses. In this study, we used high-density oligonucleotide arrays to produce a comprehensive picture of gene expression in murine CD4(+) Th1 and Th2 cells, as well as CD8(+) type 1 and type 2 T cells. Polarized type 1 and 2 cells transcribed mRNA for an unexpectedly large number of genes, most of which were expressed in a similar fashion between type 1 and type 2 cells. However, >100 differentially expressed genes were identified for both the CD4(+) and CD8(+) type 1 and 2 subsets, many of which have not been associated with T cell polarization. These genes included cytokines, transcription factors, molecules involved in cell migration, as well as genes with unknown function. The program for type 1 or type 2 polarization was similar for CD4(+) and CD8(+) cells, since gene expression patterns were roughly the same. The expression of select genes was confirmed using real-time PCR. The identification of genes associated with T cell polarization may give important insights into functional and phenotypic differences between effector T cell subsets and their role in normal responses and inflammatory disease.

Animals↗

PubMed2001

Effects of rooting and tree growth of selected woodland species on cap integrity in a mineral capped landfill site.

The above and below ground growth of three tree species (Alnus glutinosa, Pinus nigra var. maritima and Acer pseudoplatanus) was studied on a containment landfill site at Waterford, Hertfordshire, UK. Tree root architecture was studied using soil inspection pits excavated next to 12 trees of each species and mapped in detail. Tree height was related to soil thickness over the compacted mineral cap. No roots entered the cap where soil thickness was 1.3 m, but a few roots, especially of alder, were observed within it when the soil cover was 1.0 m or less. Micromorphological analysis of undisturbed samples of the mineral cap suggested that roots exploited weaknesses in the cap rather than actively causing penetration into it. Alder roots were more tolerant of anaerobic conditions within the cap than the other species examined. The results confirm that mineral caps should be covered by 1.5 m of soil or soil-forming material if tree establishment is intended over a restored landfill site, unless protected by other parts of a composite capping system.

Environmental Pollution↗

PubMed2001

Genetic parameters for ultrasound and carcass measures of yield and quality among replacement and slaughter beef cattle.

Real time ultrasound (RTU) measures of longissimus muscle area and fat depth were taken at 12 and 14 mo of age on composite bulls (n = 404) and heifers (n = 514). Carcass longissimus muscle area and fat depth, hot carcass weight, estimated percentage lean yield, marbling score, Warner-Bratzler shear force, and 7-rib dissectable seam fat and lean percentages were measured on steers (n = 235). Additive genetic variances for longissimus muscle area were 76 and 77% larger in bulls at 12 and 14 mo than the corresponding estimates for heifers. Heritability estimates for longissimus muscle area were 0.61 and 0.52 in bulls and 0.49 and 0.47 in heifers at 12 and 14 mo, respectively. The genetic correlations of longissimus muscle area of bulls vs heifers were 0.61 and 0.84 at 12 and 14 mo, respectively. Genetic correlations of longissimus muscle area measured in steer carcasses were 0.71 and 0.67 with the longissimus muscle areas in bulls and heifers at 12 mo and 0.73 and 0.79 at 14 mo. Heritability estimates for fat depth were 0.50 and 0.35 in bulls and 0.44 and 0.49 in heifers at 12 and 14 mo, respectively. The genetic correlation of fat depth in bulls vs heifers at 12 mo was 0.65 and was 0.49 at 14 mo. Genetic correlations of fat depth measured in bulls at 12 and 14 mo with fat depth measured in steers at slaughter were 0.23 and 0.21, and the corresponding correlations of between heifers and steers were 0.66 and 0.86, respectively. Live weights at 12 and 14 mo were genetically equivalent (r(g) = 0.98). Genetic correlations between live weights of bulls and heifers with hot carcass weight of the steers were also high (r(g) > 0.80). Longissimus muscle area measured using RTU was positively correlated with carcass measures of longissimus muscle area, estimated percentage lean yield, and percentage lean in a 7-rib section from steers. Measures of backfat obtained using RTU were positively correlated with fat depth and dissectable seam fat from the 7-rib section of steer carcasses. Genetic correlations between measures of backfat obtained using RTU and marbling were negative but low. These results indicate that longissimus muscle area and backfat may be under sufficiently different genetic control in bulls vs heifers to warrant being treated as separate traits in genetic evaluation models. Further, traits measured using RTU in potential replacement bulls and heifers at 12 and 14 mo of age may be considered different from the corresponding carcass traits of steers.

Adipose Tissue↗

PubMed2000

Dendritic cell elimination as an assay of cytotoxic T lymphocyte activity in vivo.

We show in this paper that the survival of antigen-loaded dendritic cells in vivo may be used as a sensitive readout of CTL activity. We have previously shown that dendritic cells labeled with the fluorescent dye CFSE and injected sub-cutaneously into mice migrate spontaneously to the draining lymph node where they persist for several days. In the presence of effector CTL responses, dendritic cells loaded with specific antigen rapidly disappear from the draining lymph node. In this paper we extend the above observations and set up a simple and sensitive method to reveal CTL activity in individual mice in vivo. Dendritic cells were labeled with two different fluorochromes, loaded with antigen or left untreated, and mixed together before injection into mice. We show that only the dendritic cells loaded with specific antigen were cleared from the draining lymph node, while dendritic cells not loaded with antigen remained unaffected. Cytotoxic responses generated by immunization with peptide-loaded dendritic cells, or by infection with influenza virus, could be revealed using this method. Comparison of the differential survival of dendritic cells populations mixed together also allowed us to accurately evaluate the disappearance of dendritic cells, irrespective of variability in the injection site and other parameters. Given the ability of dendritic cells to efficiently take up and present complex antigens, nucleic acids and apoptotic bodies, this method may also allow the evaluation of cytotoxic activity against antigens that are not characterized in terms of peptide epitopes.

Animals↗

PubMed2000

Comparison of models for genetic evaluation of scrotal circumference in crossbred bulls.

The aim of this study was to evaluate the effect of including concomitant body weight and(or) a random dam effect in genetic evaluation models on variance component estimates and standard error of prediction for scrotal circumference (SC) at 6, 8, 10, and 12 mo. Variance components and average standard errors of prediction were compared under models differing in either the number of related traits (M11 [SC], M12 [SC and BW]) or an uncorrelated random dam effect (M21 [SC], M22 [SC and BW]) using records on 1,547 bull calves. In a single-trait model (M11), estimates of direct heritabilities (h2a) for SC were .45, .49, .57, and .66 at 6, 8, 10, and 12 mo, respectively. In a two-trait model (M12), h2a were similar to those in M11 model. In M21, h2a for SC were .37, .42, .54, and .65, whereas the proportions of phenotypic variance due to dams (d2) were .12, .11, .04, and .02 at 6, 8, 10, and 12 mo, respectively. Similarly, in M22, h2a for SC were .36, .44, .56, and .65 and d2 were .13, .10, .02, and .02. Standard errors of prediction for SC EBV from M22 were reduced by 2.86, 1.21, 3.02, and 1.99% relative to M21 and by 6.45, 2.70, 2.72, and 1.21% relative to M11 at 6, 8, 10, and 12 mo, respectively. Standard errors of prediction for SC EBV from M12 were reduced by .06, .73, 1.56, and .87% relative to M11 at 6, 8, 10, and 12 mo, respectively. The importance of the dam effect decreased with age for both SC and BW. These results demonstrate that a two-trait (SC and BW) animal model would result in more accurate evaluations of yearling SC EBV in beef cattle than a single-trait model.

Animals↗

PubMed1998

Survival of Listeria monocytogenes in sea water and effect of exposure on thermal resistance.

Survival, recoverability and sublethal injury of two strains of Listeria monocytogenes, Scott A and an environmental strain KM, on exposure to sea water at 12.8 or 20.8 degrees C was determined using in situ diffusion chambers. Plate counts were used to assess recoverability and injury while 5-cyano-2,3-ditolyl tetrazolium chloride (CTC) reduction was used to determine respiratory activity. T90 values (times for 10-fold decreases in numbers of recoverable cells) on non-selective medium (trypticase soya agar with 0.6% yeast extract) at 12.8 and 20.8 degrees C were 61.7 and 69.2 h for L. monocytogenes Scott A, and 103.0 and 67.0 h for L. monocytogenes KM, respectively. On selective medium (Oxford agar), T90 values at 12.8 and 20.8 degrees C were 60.6 and 56.9 h for L. monocytogenes Scott A, and 83.0 and 65.9 h for L. monocytogenes KM, respectively. With Scott A, the percentage of sublethally injured cells at 12.8 and 20.8 degrees C was 1.7 and 17.7%, respectively, while for KM the values were 19.0 and 1.6%, respectively. The fraction of cells reducing CTC but which were not recoverable on plating progressively increased on exposure to sea water. Listeria monocytogenes KM challenged at 58 degrees C showed an apparent increase in heat resistance after exposure to sea water at 20.8 degrees C for 7 d (D58 = 2.64 min) compared with before exposure (D58 = 1.24). This increase in thermal resistance was not apparent at temperatures greater than 63 degrees C, and analysis of the best-fit regression lines fitted to the thermal data obtained from the two cell populations indicated that their thermal resistance was not significantly different (P > 0.05) over the temperature range tested (58-62 degrees C).

Heating↗

PubMed1998

Thermal death times of Hafnia alvei cells in a model suspension and in artificially contaminated hot-smoked kahawai (Arripis trutta).

In New Zealand the product most frequently implicated in cases of scombroid poisoning is hot-smoked kahawai (Arripis trutta). Using a Hafnia alvei strain, previously isolated from a portion of hot-smoked kahawai with a histamine level of 1,659.4 mg/kg, thermal death trials were carried out in a model suspension (0.1% peptone) at 54, 55, 56, 57, and 58 degrees C. From the linear regression line (R2 = 0.98) fitted to observed D values plotted against temperature, calculated D values for 54, 55, 56, 57, and 58 degrees C were estimated to be 0.63, 0.36, 0.20, 0.11, and 0.06 min, respectively, giving a z value of 4.14 degrees C. Thermal death trials were also carried out for H. alvei associated with hot-smoked kahawai at 54, 55, 55.5, 56, and 57 degrees C. From the linear regression line (R2 = 0.93) fitted to the data, calculated D values for 54, 55, 56, and 57 degrees C were estimated to be 1.42, 0.74, 0.38, and 0.20 min, respectively, giving a z value of 3.57 degrees C. Results indicate that hot smoking has the potential to eliminate H. alvei from seafood products.

Enterobacteriaceae↗

PubMed1997

Opening the black box: the relationship between neural networks and linear discriminant functions.

Over the last ten years feed-forward neural networks have become a popular tool for statistical decision making. During this time, they have been applied in many fields, including cytological classification. Neural networks are often treated as a black box, whose inner workings are concealed from the researcher. This is unfortunate, since the inner workings of a neural network can be understood in a manner similar to that of a linear discriminant function, which is the standard tool that researchers use for decision making. This paper discusses feed-forward neural networks and some methods to improve their performance for classification problems. Their relationship to discriminant functions will be examined for a simple two-dimensional classification problem.

Algorithms↗

PubMed1997

Detection of malignancy associated changes in cervical cell nuclei using feed-forward neural networks.

Normal cells in the presence of a precancerous lesion undergo subtle changes of their DNA distribution when observed by visible microscopy. These changes have been termed Malignancy Associated Changes (MACs). Using statistical models such as neural networks and discriminant functions it is possible to design classifiers that can separate these objects from truly normal cells. The correct classification rate using feed-forward neural networks is compared to linear discriminant analysis when applied to detecting MACs. Classifiers were designed using 53 nuclear features calculated from images for each of 25,360 normal appearing cells taken from 344 slides diagnosed as normal or containing severe dysplasia. A linear discriminant function achieved a correct classification rate of 61.6% on the test data while neural networks scored as high as 72.5% on a cell-by-cell basis. The cell classifiers were applied to a library of 93,494 cells from 395 slides, and the results were jackknifed using a single slide feature. The discriminant function achieved a correct classification rate of 67.6% while the neural networks managed as high as 76.2%.

Female↗

PubMed1995

Insight in schizophrenia and its relationship to psychopathology.

A group of 29 patients with DSM-IIIR schizophrenia was studied during acute hospital admission to examine the relationship between changes in insight and positive and negative symptomatology in schizophrenia. On admission, insight scores were obtained using a modification of the SUMD (Amador et al., 1993), and of the degree of psychopathology using the PANSS (Kay et al., 1987). These measures were repeated prior to discharge between 3 and 6 weeks later. Insight improved significantly during the course of in-patient treatment. A relationship between psychopathology and insight level was evident at both assessments, though the pattern was different. Improvement in psychopathology correlated significantly with increased insight into past symptoms but not current illness. When treatment responders were examined there was a significant relationship only with negative symptom improvement and PANSS totals, but not with improvement in positive symptoms. The greater the trend towards negative symptom predominance, the less the tendency to improve in the awareness of current symptoms. This study suggests an inverse relationship with enduring negative symptoms.

Adolescent↗

PubMed1995

Inhibition of cytochrome-c oxidase activity during prolonged hypoxia.

During acute (< 30 min) hypoxia, cellular respiration is independent of the O2 concentration as long as PO2 remains above a critical value (5-10 Torr). Similarly, state 3 respiration by isolated mitochondria is independent of PO2 above a critical tension of 2-4 Torr. However, rat hepatocytes demonstrate a reversible suppression of respiration and an increase in NAD(P)H concentration during prolonged (2-24 h), but not acute hypoxia [P. T. Schumacker, N. Chandel, and A. G. N. Augusti. Am. J. Physiol. 265 (Lung Cell. Mol. Physiol. 9): L395-L402, 1993]. This study tested whether respiration is similarly inhibited in isolated mitochondria exposed to low PO2 for prolonged periods and whether cytochrome-c oxidase participates in this response. Coupled rat liver mitochondria were incubated under low oxygen conditions (PO2 < 2 Torr) for 2 h. State 3 respiration after reoxygenation to PO2 = 20 Torr was then compared with the value obtained subsequently at 100 Torr. Using succinate and ADP as substrates, we determined that state 3 respiration at 20 Torr was 61.0 +/- 8.4% of the subsequent value at 100 Torr (P < 0.05). By contrast, control mitochondria reoxygenated to 100 Torr first and 20 Torr subsequently showed no significant difference at the two O2 tensions (P = NS).(ABSTRACT TRUNCATED AT 250 WORDS)

Animals↗

PubMed1994

A bioeconomic model for comparing beef cattle genotypes at their optimal economic slaughter end point.

A bioeconomic model of a feedlot was developed for the comparison of beef cattle genotypes under specified management and marketing conditions. The optimization behavior of commercial feedlot managers is incorporated into the model using optimum economic rotation theory. The days spent in the feedlot (rotation) by a group of animals are derived using this theory so as to maximize an objective function. Differences among breeds in the present value of profits from a single rotation, expressed per animal, represent the expected price premium paid for a feeder animal of a particular breed. Feed requirements and growth rates for a genotype are predicted over time for a specified diet from estimated mature size. Estimates of carcass fatness over time as a function of the energy content of the diet and estimates of dressing percentage over time are used for each genotype. A base model is described that incorporates biological parameters estimated for 11 breeds from a major breed comparison experiment and uses prices of inputs and outputs for Ontario feedlots. Sensitivity of the model to these biological and economic assumptions is shown. When breeds are compared at constant days fed, weight, or fat depth slaughter points, rankings are inconsistent, relative to those when each breed is slaughtered at its optimal economic point. The model can be used to establish appropriate slaughter end points for comparing beef cattle breeds and crosses and to evaluate breeding objectives for feedlot traits in genetic improvement programs.

Agriculture↗

PubMed1994

Estimation of variance components for lamb weights in three sheep populations.

Variance components were estimated for lamb weight at birth, 50 d, and 100 d of age. Data from the Canadian flock recording program for lambs born in 1977 to 1991 for Hampshires (n = 6,395) and Polled Dorsets (n = 29,204) and 1982 to 1991 for Romanovs (n = 3,432) were studied. Observed weights were pre-adjusted for the effects of age of dam, sex of lamb, birth-rearing type, month or quarter of year of birth, parity-lambing interval, and age of dam at first lambing, using estimates derived from a fixed effects model including contemporary groups plus these factors. Pre-adjusting for nuisance variables reduced the number of equations in the model for variance component estimation. A single-trait animal model with derivative-free restricted maximum-likelihood procedures was used. Random effects were additive direct and maternal genetic, litter (common environmental), and error. An alternate model excluded maternal genetic effects. Estimates of litter variance as a proportion of phenotypic variance were of moderate size (.12 to .43) and consistent across breeds and models. The mean correlation between direct and maternal genetic effects, across traits and breeds, weighted by the number of animals, was -.40 (SE = .15). The maternal genetic variance or direct-maternal genetic covariance component, or both, was different from zero (P < .05) for all traits in Hampshires and Polled Dorsets, suggesting that maternal effects were important for weight of lambs even at 100 d of age. Estimates of direct heritability ranged from .05 to .45, varying across traits, breeds, and models.(ABSTRACT TRUNCATED AT 250 WORDS)

Animals↗

PubMed1993

Comparison of Finnish Landrace and Romanov as prolific breeds in a terminal-sire crossbreeding system.

Targhee ewes lambing to Romanov vs Finnish Landrace rams gave birth to .22 more lambs (P = .02) and had .15 more lambs alive at weaning (P = .11) but did not rear more lambs. Finnish Landrace x Targhee (FT) and Romanov x Targhee (RT) lambs were similar for preweaning survival and for all growth and carcass traits studied. Romanov x Targhee ewes were 14.2 +/- 6.2 d younger (P = .02) at their first estrus and 12.1 +/- 2.8 d younger (P < .01) at their first lambing than FT ewes. The ovulation rate of RT ewes exceeded that of FT ewes by .35 (P < .01). Romanov x Targhee ewes gave birth to .42 more (P < .01) lambs per ewe lambing, had .39 more (P < .01) lambs alive at weaning per ewe lambing, and reared .15 more (P = .03) lambs per ewe lambing than FT ewes. Embryonic survival, adjusted for ovulation rate, was greater (P < .01) for RT (88.3 +/- 3.3%) than for FT (80.0 +/- 3.7%) ewes. Lamb survival was similar for the two F1 crosses, with or without adjustment for number of lambs born. Overall survival (the proportion of ova that resulted in weaned lambs) was greater (P = .02) for RT ewes (77.6 +/- 4.2%) than for FT ewes (67.5 +/- 4.7%), at the same ovulation rate. When ewes were credited with all the lambs they gave birth to, RT ewes produced 4.6 +/- 1.8 kg more (P < .01) weight of lamb at weaning.(ABSTRACT TRUNCATED AT 250 WORDS)

Animals↗

PubMed1989

Ifosfamide encephalopathy.

We describe a case of reversible encephalopathy caused by the recently released anticancer drug Ifosfamide. The clinical course, role of EEG in monitoring and predicting encephalopathy, and putative mechanism of neurotoxicity is discussed. Short infusion times and/or prior CNS disease may increase the risk of encephalopathy.

Brain Diseases↗