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M T Clegg

Publications and source records attributed to M T Clegg.

At least 55 records · Page 3Linked to original sources
PubMed1984

The barley chloroplast DNA atpBE, trnM2, and trnV1 loci.

The nucleotide sequence of a barley chloroplast DNA 3.7 kb SmaI-HindIII fragment is presented. This fragment contains atpBE, the genes for the beta and epsilon subunits of ATPase; trnM2, the gene for tRNA2met; and trnV1, the gene for tRNA1va1. The atpE-trnM2 interval is 126 bp and trnM2 is transcribed towards atpBE. The trnM2-trnV1 interval is 203 bp and trnV1 is transcribed away from trnM2. The trnV1 locus has a 597 bp intervening sequence. the organization and sequences of these genes are compared to the analogous genes from maize and tobacco chloroplast DNA. Using the latter comparisons the nature of sequence divergence between chloroplast DNAs is discussed.

Adenosine Triphosphatases↗
PubMed1984

Estimation of mating system parameters when outcrossing events are correlated.

Many plant species have mating systems characterized by a mixture of self-fertilization and outcrossing. Statistical estimation of the outcrossing rate has relied on a model of the mating process that assumes that successive outcross events within a family arise from independent draws of pollen from the total population of male plants. Although this assumption is likely to be most appropriate for wind-pollinated plants, it is not appropriate in certain insect-pollinated plants. An alternative model is developed that assumes that successive outcross events within a family involve pollen drawn from a single male parent. The estimation of the parameters that index this model is outlined and a procedure for calculating the variances of the parameter estimates is presented. Monte Carlo simulations of the sampling processes assumed by each model are also presented. The simulations show that application of the incorrect estimation model to data can lead to a large bias in parameter estimates.

Journal Article↗
PubMed1984

Molecular evolution of chloroplast DNA sequences.

Comparative data on the evolution of chloroplast genes are reviewed. The chloroplast genome has maintained a similar structural organization over most plant taxa so far examined. Comparisons of nucleotide sequence divergence among chloroplast genes reveals marked similarity across the plant kingdom and beyond to the cyanobacteria (blue-green algae). Estimates of rates of nucleotide substitution indicate a synonymous rate of 1.1 x 10(-9) substitutions per site per year. Noncoding regions also appear to be constrained in their evolution, although addition/deletion events are common. There have also been evolutionary changes in the distribution of introns in chloroplast encoded genes. Relative to mammalian mitochondrial DNA, the chloroplast genome evolves at a conservative rate.

Biological Evolution↗
PubMed1983

Isozyme assessment of plant genetic resources.

The genetic resources of cultivated plants consist of the genetic diversity present among developed cultivars, in the land races or primitive stocks, and in wild populations of their evolutionary relatives. Genetic evaluation of these resources through isozyme studies provides an important aid in efficient collection, storage, and use. Recent isozyme studies with barley exemplify these points. The allelic isozyme diversity present in 12 land race samples from Iran has been compared with that found in cultivars on the one hand, and natural populations of wild barley (H spontaneum) on the other. The primitive materials were on average more variable than the cultivars but less variable than the wild populations, supporting the view that the land races are or crucial importance in genetic conservation. Some roles for isozyme data in the manipulation of genetic resources have been outlined.

Agriculture↗
PubMed1982

Purification of total cellular DNA from a single plant.

A procedure is outlined for purifying DNA from a single plant. A crude organelle pellet consisting of nuclei, chromatin, chloroplasts, and mitochondria is prepared, suspended, and immediately lysed with detergents. The DNA is separated from RNA, protein, and polysaccharides by banding it in CsCl density equilibrium gradients. Ethidium bromide is included in all buffers to act as an inhibitor of DNAase activity. The DNA prepared in this manner can be digested with restriction endonucleases, separated by gel electrophoresis, and used to identify specific genes by hybridization of cloned DNA sequences.

Chloroplasts↗
PubMed1982

Use of restriction fragment length polymorphisms for genetic counseling: population genetic considerations.

Two-locus population genetic models are analyzed to evaluate the utility of restriction fragment length polymorphisms for purposes of genetic counseling. It is shown that the linkage disequilibrium between a neutral marker and a tightly linked overdominant mutant will increase rapidly as the mutant moves to its polymorphic equilibrium. The linkage disequilibrium decays for deleterious recessive mutants. Two measures involving the linkage disequilibrium are investigated to determine how much information the transmission of the neutral marker provides about the transmission of the selected gene. In certain kinds of matings, where the parental two-locus genotypes and linkage phases are known, it is possible to determine whether or not a progeny is homozygous for the selected gene on the basis of the fetal genotype at the marker locus. A quantity of primary interest is the fraction of matings between individuals heterozygous for the selected gene in which exact diagnosis can be made in this way. The expected proportion of such matings, taken over all two-locus matings involving heterozygotes at the selected locus, is calculated as a function of the gene frequencies at the two loci and the linkage disequilibrium between them. This expected value is maximized when the linkage disequilibrium is at its maximum in absolute value. Fewer than half of all matings are informative if the linkage disequilibrium is small in magnitude or if the gene frequencies at the two loci are quite different. Consideration is also given to various conditional measures of association that may be useful when the parental two-locus genotypes are unknown. The results suggest that the utility of tightly linked neutral marker genes in predicting the transmission of a selected gene is generally less when selection acts against a recessive gene than for overdominant selection.

Base Sequence↗
PubMed1981

A restriction map of the ribosomal RNA genes and the short single-copy DNA sequence of the pearl millet chloroplast genome.

The chloroplast rDNA genes of pearl millet (Pennisetum americanum) have been cloned and physically mapped. The chloroplast genome of the pearl millet contains two identical rRNA genes located on DNA sequences that are inverted with respect to one another and separated by 12 kb of single-copy DNA. The rRNA genes were positioned on a restriction endonuclease map by using as hybridization probes specific cloned rDNA sequences from the chloroplast DNA of the alga Euglena gracilis. The 16S and 23S rRNA genes were shown to be approx. 2 kb from one another, and the 5S RNA gene is immediately adjacent to the 23S tRNA gene.

Bacteriophage lambda↗
PubMed1981

Evidence for biochemical and physiological differences between enzyme genotypes in Drosophila melanogaster.

The in vivo flux of carbon through the pentose shunt is investigated as a function of different 6-phosphogluconate dehydrogenase (6Pgd) and glucose-6-phosphate dehydrogenase (G6pd) genotypes by using differential radioactive labeling of the C-1 and C-6 positions of glucose. Alternative 6Pgd-G6pd genotypes are shown to differ in relative in vivo carbon flux through the pentose shunt. The relative in vitro specific activity differences between the 6PgdSS and 6PgdFF genotypes appear to be primarily responsible for these differences. In addition, the pentose-shunt activity is correlated with the rate of lipid synthesis. This correlation is consistent with the major metabolic function of the pathway, which is to produce NADPH for lipid synthesis. Taken together, the results of these experiments show that different genotypes of 6Pgd are associated with measurable biochemical and physiological differences. Higher order phenotypic differences of this kind must be demonstrated to support the hypothesis that natural selection can discriminate among allozymes of a given genetic locus.

Animals↗
PubMed1978

Dynamics of correlated genetic systems. IV. Multilocus effects of ethanol stress environments.

Four replicate populations of Drosophila melanogaster, two reared on medium supplemented with ethanol and two reared on standard medium, were electrophoretically monitored for 28 generations. During the first 12 generations, allelic, genotypic and gametic frequencies were determined for eight polymorphic enzymes: GOT, alpha-GPDH, MDH, ADH, TO, E6, Ec and ODH. Samples from generation 18 and 28 were electrophoretically typed for ADH and alpha-GPDH. In addition, samples from generation 27 were analyzed for the presence of inversion heterozygotes. The experimental results showed rapid gene-frequency divergence between control and treatment populations at the Adh locus in a direction consistent with the activity hierarchy of Adh genotypes. Gene-frequency divergence between control and treatment populations also occurred at the alpha-Gpdh locus, although the agreement among replicates appeared to have broken down by generation 28. No differential gene-frequency change occurred at any of the six remaining marker loci. Furthermore, values of linkage disequilibria among all linked pairs of genes were initially small and remained small throughout the course of the experiment. Taking these facts into account, it is argued that the gene-frequency response observed at ADH is most probably caused by selection at the Adh locus. The gene frequency response at alpha-Gpdh can also be be accounted for in terms of the effect of ethanol on energy metabolism, although other explanations cannot be excluded.

Alcohol Oxidoreductases↗
PubMed1977

Regions of stable equilibria for models of differential selection in the two sexes under random mating.

The equilibrium structure of models of differential selection in the sexes is investigated. It is shown that opposing additive selection leads to stable polymorphic equilibria for only a restricted set of selection intensities, and that for weak selection intensities must be of approximately the same magnitude in the sexes. General models of opposing directional selection, with arbitrary dominance, are investigated by considering simultaneously the stability properties of the trivial equilibria and the curve along which multiple roots appear. Numerical calculations lead us to infer that the average degree of dominance determines the equilibrium characteristics of models of opposing selection. It appears that if the favored alleles are, on the average, recessive, there may be multiple polymorphic equilibria, whereas only a single polymorphic equilibrium can occur when the favored alleles are, on the average, dominant. The principle that the average degree of dominance controls equilibrium behavior is then extended to models allowing directional selection in one sex with overdominance in the other sex, by showing that polymorphism is maintained if and only if the average fitness in heterozygotes exceeds one.

Animals↗
PubMed1976

Dynamics of correlated genetic systems. I. Selection in the region of the Glued locus of Drosophila melanogaster.

The dynamical behavior of chromosomal segments undergoing strong selection was investigated in four replicate populations of Drosophila melanogaster. This was accomplished by following the joint behavior of allozyme markers at the loci phosphoglucomutase and esterase C, adjacent to the recessive lethal locus Glued, during and following the course of selection against Glued. The results show strong selection at other loci in the region of the marked segment. Examination of the joint dynamic of the two markers indicates that there must be more than one, and probably several, selected loci in the region under observation, with large epistatic effects. The mode of selection on the segment often results in excess heterozygosity at the markers, but does not appear to be constant in time. It is concluded that the density of selective effects in the region under study is substantial.

Alleles↗
PubMed1975

Evolutionary Changes in the Mating System of an Experimental Population of Barley (Hordeum vulgare L.).

An analysis is presented of the reproductive cycle in an experimental population of barley. The experimental design included growing three different generations of the population in the same year and environment, thus permitting an assessment of the mating system at three stages in the evolutionary history of the population, unconfounded by environmental differences. Gene frequencies sometimes differed significantly in adults and in the effective pollen pool. It was also found that out-crossing rate more than doubled during the twenty generations spanned by the study. These results provide evidence for selection during reproductive phases of the life cycle. They also demonstrate that evolution in this predominantly self-pollinating population was in the direction of increased recombinational potential.

Journal Article↗
PubMed1972

Evidence for coadaptation in Avena barbata.

Two populations of Avena barbata have been sampled intensively and allelic frequencies have been determined on a fine grid for six enzyme loci. The distribution of alleles among microniches within the location occupied by one of these populations (CSA-1) was correlated with environment following patterns of macro- and microdifferentiation previously described in California. Multilocus analyses revealed striking gameticphase disequilibrium for both linked and unlinked loci, and also that two balanced five-locus gametic types, one associated with mesic conditions and the other with more xeric conditions, are in substantial excess at the CSA-1 location. Evidence is presented that these two gametic types are maintained by selection acting on two coadapted combinations of alleles, held together by restriction of recombination resulting from linkage and/or inbreeding. Gametic-phase disequilibrium featuring different allelic complexes were found in each of three microniches in the second population (Geyserville), which occupies a site that is environmentally atypical for A. barbata.

Adaptation, Physiological↗
PubMed1972

Patterns of Genetic Differentiation in the Slender Wild Oat Species Avena barbata.

Allozyme frequencies at five enzyme loci were determined for 14 California populations of Avena barbata, a species introduced to California from the Mediterranean Basin during the colonization of North America. Allelic frequencies at these loci were also determined in Mediterranean collections of this species. The pattern of divergence of the California populations from the ancestral gene pool was not random and was strongly correlated with environment; thus, the pattern is not in accord with the hypothesis that most electrophoretically detectable variants are adaptively neutral. Rates of gene substitution in California were also not in accord with the neutrality hypothesis. The observations are, however, compatible with predictions of Neo-Darwinian evolutionary theory. We interpret these observations to indicate that natural selection plays a major role in determining the unique patterns of distribution of genetic variability in the slender wild oat in California.

Journal Article↗
PubMed1972

Is the gene the unit of selection? Evidence from two experimental plant populations.

The dynamics of gametic frequency change have been analyzed in two experimental plant populations. Individual plants were scored for their genotype at four enzyme loci, and four-locus joint gametic frequencies were estimated from the genotypic data over generations. Striking correlations developed in allelic state over loci, including correlations between nonlinked loci, as these populations evolved. Furthermore, the same pair of four-locus complementary gametic types came into marked excess in the late generations of both populations. The results demonstrate that natural selection acted to structure the genetic resources of these populations into sets of highly interacting, coadapted gene complexes. They also provide evidence, at the level of the gene, that selection operating on correlated multilocus units is an important determinant of population structure.

Alleles↗