Biomedical subjects

M G Lagally

Publications and source records attributed to M G Lagally.

8 recordsLinked to original sources

PubMed2000

Unique dynamic appearance of a Ge-Si ad-dimer on Si(001).

We carry out a comparative study of the energetics and dynamics of Si-Si, Ge-Ge, and Ge-Si ad-dimers on top of a dimer row in the Si(001) surface, using first-principles calculations. The dynamic appearance of a Ge-Si dimer is distinctively different from that of a Si-Si or Ge-Ge dimer, providing a unique way for its identification by scanning tunneling microscopy (STM). Its "rocking" motion, observed in STM, actually reflects a 180 degrees rotation of the dimer, involving a piecewise-rotation mechanism. The calculated energy barrier of 0.74 eV is in good agreement with the experimental value of 0.82 eV.

Journal Article↗

PubMed2000

Creation of "quantum platelets" via strain-controlled self-organization at steps.

We demonstrate, by both theory and experiment, the strain-induced self-organized formation of "quantum platelets," monolayer-thick islands of finite dimensions. They form at the early stage of heteroepitaxial growth on a substrate with regularly spaced steps, and align along the steps. In the direction perpendicular to substrate steps, the island position and spacing can be preselected through substrate miscut. Along the steps, the island size and density are controlled by self-organized growth.

Journal Article↗

PubMed1999

Progress toward demonstration of a surface based DNA computation: a one word approach to solve a model satisfiability problem.

A multi-base encoding strategy is used in a one word approach to surface-based DNA computation. In this designed DNA model system, a set of 16 oligonucleotides, each a 16mer, is used with the format 5'-FFFFvvvvvvvvFFFF-3' in which 4-8 bits of data are stored in eight central variable ('v') base locations, and the remaining fixed ('F') base locations are used as a word label. The detailed implementations are reported here. In order to achieve perfect discrimination between each oligonucleotide, the efficiency and specificity of hybridization discrimination of the set of 16 oligonucleotides were examined by carrying out the hybridization of each individual fluorescently tagged complement to an array of 16 addressed immobilized oligonucleotides. A series of preliminary hybridization experiments are presented and further studies about hybridization, enzymatic destruction, read out and demonstrations of a SAT problem are forthcoming.

Animals↗

PubMed1999

Surface-based DNA computing operations: DESTROY and READOUT.

DNA computing on surfaces is where complex combinatorial mixtures of DNA molecules are immobilized on a substrate and subsets are tagged and enzymatically modified (DESTROY) in repeated cycles of the DNA computation. A restriction enzyme has been chosen for the surface DESTROY operation. For the READOUT operation, both cycle sequencing and PCR amplification followed by addressed array hybridization were studied to determine the DNA sequences after the computations.

Animals↗

PubMed1998

In situ visualization of DNA double-strand break repair in human fibroblasts.

A method was developed to examine DNA repair within the intact cell. Ultrasoft x-rays were used to induce DNA double-strand breaks (DSBs) in defined subnuclear volumes of human fibroblasts and DNA repair was visualized at those sites. The DSBs remained in a fixed position during the initial stages of DNA repair, and the DSB repair protein hMre11 migrated to the sites of damage within 30 minutes. In contrast, hRad51, a human RecA homolog, did not localize at sites of DNA damage, a finding consistent with the distinct roles of these proteins in DNA repair.

Bromodeoxyuridine↗

PubMed1998

A surface-based approach to DNA computation.

A scalable approach to DNA-based computations is described. Complex combinatorial mixtures of DNA molecules encoding all possible answers to a computational problem are synthesized and attached to the surface of a solid support. This set of molecules is queried in successive MARK (hybridization) and DESTROY (enzymatic digestion) operations. Determination of the sequence of the DNA molecules remaining on the surface after completion of these operations yields the answer to the computational problem. Experimental demonstrations of aspects of the strategy are presented.

Automation↗

PubMed1998

A double mirror W/C multilayer monochromator for radiation biology applications.

A double-mirror multilayer monochromator was developed for the purpose of irradiating live cell cultures at the Synchrotron Radiation Center, University of Wisconsin-Madison. The monochromator is designed for the soft x-ray region with photon energies between 270 and 2400 eV. Multilayer mirrors with 55 bilayers of W/C and a bilayer spacing of d = 3.0 nm are sputter deposited on Si substrates. By proper masking of the sputtering sources, variation in the bilayer spacing over the area of the mirror is minimized. The uniformity of the bilayer spacing was measured to be delta d/d < 1%, over the 75 mm x 25 mm area of the mirrors. The reflectivity was measured as a function of energy to determine the integrated reflectivity and evaluate the contribution of the specular reflection and higher orders to the monochromatic beam. The use of suitable filters with a Si(Li) detector allows determination of the spectral output of the monochromator. The output power of the monochromator between 270 and 2400 eV is measured. The resolution of the monochromator is delta lambda/lambda = 0.04. Applications of the monochromator to radiation biology are discussed.

Cells, Cultured↗

PubMed1976

On the adequacy of the draw-sealing of gas-filled glass ampoules.

It is recommended that a very clear distinction be made between draw-sealed and tip-sealed glass ampoules. We would, that is, defend the draw-seal for its proven value and its demonstrated freedom from microscopic channels. Where tip-sealing is still employed, we would suggest its reevaluation. Little more can be said in the absence of an immediate reason for the differences in the behavior of the glass in the course of the two procedures. Others may be able to explain the persistence of the capillary in the tip-seal in physico-chemical terms. As to balloon-seals, the third "variety" in common use, it would seem that their characteristics must derive from the way they are made. Ballooned tip-seals appear to have been shown by Greiff et al. (1975) to suffer the same shortcomings as the simple tip-seal. Where a draw-sealed ampoule is heated at the tip after the completion of the seal, a ballooned end would seem to have to retain the true seal effected in the draw process. It is perhaps sufficient to let the subject rest with a reassurance as to the adequacy of the common draw-seal.

Argon↗