Biomedical subjects

Izumi Waki

Publications and source records attributed to Izumi Waki.

9 recordsLinked to original sources

PubMed2006

Duty cycle enhancement of an orthogonal acceleration TOF mass spectrometer using an axially-resonant excitation linear ion trap.

We report a new technique to enhance detection duty cycle of an orthogonal-acceleration time-of-flight mass spectrometer (oaTOF) over a broad mass range. To this end, we used an axially-resonant-excitation linear ion trap, which ejects ions axially and mass selectively into a non-mass-selective linear ion trap in front of the TOF pusher. A delay between the ejection timing of the non-mass-selective LIT and the push timing of the oaTOF was swept mass-synchronously with the axially-resonant-excitation linear ion trap, so that ions are detected with duty cycle larger than 60% over a wide mass range from m/z 174.1 to 1922.0, which is 3 to 10 times better than conventional oaTOF.

Journal Article↗

PubMed2006

Mass selective ejection by axial resonant excitation from a linear ion trap.

We describe a new mass selective ejection method from a linear ion trap, which we call axial resonant excitation (AREX). A set of vane lenses are inserted between each quadrupole rod to produce electrostatic potential that is approximately harmonic along the central axis of the quadrupole field. After ions with specific m/z are resonantly oscillated in the axial direction, the ions are mass selectively ejected in the axial direction. At a high scan rate of 11 Th/ms, AREX achieved a high ejection efficiency of more than 60%, which is more than three times higher than a conventional mass selective axial ejection method from a linear trap using fringing field.

Binding Sites↗

PubMed2006

'Information-Based-Acquisition' (IBA) technique with an ion-trap/time-of-flight mass spectrometer for high-throughput and reliable protein profiling.

Highly complex protein mixtures can be analyzed after proteolysis using liquid chromatography/mass spectrometry (LC/MS). In an LC/MS run, intense peptide ions originating from high-abundance proteins are preferentially analyzed using tandem mass spectrometry (MS(2)), so obtaining the MS(2) spectra of peptide ions from low-abundance proteins is difficult even if such ions are detected. Furthermore, the MS(2) spectra may produce insufficient information to identify the peptides or proteins. To solve these problems, we have developed a real-time optimization technique for MS(2), called the Information-Based-Acquisition (IBA) system. In a preliminary LC/MS run, a few of the most intense ions detected in every MS spectrum are selected as precursors for MS(2) and their masses, charge states and retention times are automatically registered in an internal database. In the next run, a sample similar to that used in the first run is analyzed using database searching. Then, the ions registered in the database are excluded from the precursor ion selection to avoid duplicate MS(2) analyses. Furthermore, real-time de novo sequencing is performed just after obtaining the MS(2) spectrum, and an MS(3) spectrum is obtained for accurate peptide identification when the number of interpreted amino acids in the MS(2) spectrum is less than five. We applied the IBA system to a yeast cell lysate which is a typical crude sample, using a nanoLC/ion-trap time-of flight (IT/TOF) mass spectrometer, repeating the same LC/MS run five times. The obtained MS(2) and MS(3) spectra were analyzed by applying the Mascot (Matrix Science, Boston, MA, USA) search engine to identify proteins from the sequence database. The total number of identified proteins in five LC/MS runs was three times higher than that in the first run and the ion scores for peptide identification also significantly increased, by about 70%, when the MS(3) spectra were used, combined with the MS(2) spectra, before being subjected to Mascot analysis.

Chromatography, High Pressure Liquid↗

PubMed2005

Orthogonal trap time-of-flight mass spectrometer using a collisional damping chamber.

We report a new hybrid mass spectrometer, which is a combination of a quadrupole ion trap and an orthogonal time-of-flight (TOF) mass spectrometer. This new configuration consists of a collisional-damping chamber (CDC) inserted between an MSn-capable ion trap and a high-mass-accuracy orthogonal-TOF mass spectrometer. Because the CDC converted an ion packet into an energy-focused and quasi-continuous beam, a high mass resolution of over 10,000 and a high mass accuracy of better than 3 ppm were achieved. Moreover, the ratio of the maximum detectable m/z to the minimum detectable m/z, which is referred to here as the mass window, was improved to more than 10.

Polyethylene Glycols↗

PubMed2005

Dual linear ion trap/orthogonal acceleration time-of-flight mass spectrometer with improved precursor ion selectivity.

A new hybrid mass spectrometer based on dual linear ion traps (LITs) and an orthogonal acceleration time-of-flight mass spectrometer (oaTOF), that can achieve MS(n) analysis and high-mass-accuracy detection with high sensitivity, has been developed. Dual-LIT was necessary because, in a single LIT plus oaTOF combination, the LIT pressure favorable for high precursor selectivity in MS(n) analysis (less than 1 mTorr) was far different from an optimum damping pressure (50-100 mTorr) for efficient connection to the TOF mass spectrometer. A dual-LIT solved this problem of inconsistency of the optimum pressures by using the first LIT for MS(n) analysis and the second LIT for collisional damping. This dual-LIT/TOF instrument achieved high-sensitivity MS(n) analysis with high precursor-ion selectivity.

Journal Article↗

PubMed2004

Electron capture dissociation in a radio frequency ion trap.

We report on the first evidence of electron capture dissociation (ECD) in a radio frequency (rf) ion trap. Peptide ions, [substance P]2+, trapped in a two-dimensional, linear rf ion trap were cleaved by electrons injected along the central axis of the trap. Along the axis, the rf field component was zero and a magnetic field of 50 mT was applied. This electron injection scheme keeps the energy of the electrons below 1 eV, preventing them from heating by the rf field. The present ECD efficiency is approximately 4% by irradiation of electron current of 0.2 microA for 80 ms. ECD in rf traps may open high-throughput and low-cost ECD applications to obtain molecular structure information complementary to collision-induced dissociation.

Electrons↗

PubMed2004

High sensitivity and broad dynamic range infrared multiphoton dissociation for a quadrupole ion trap.

Dynamic control of bath gas pressure in a quadrupole ion trap (QIT) achieved high sensitivity and broad dynamic range infrared multiphoton dissociation (IRMPD). Conventional IRMPD is not sensitive because the bath gas pressure in the QIT needs to be kept at less than 1 mTorr for an effective dissociation, whereas the pressure should be about 20 mTorr for maximum trapping efficiency during ion accumulation. By switching the bath gas pressure between about 20 mTorr during the ion accumulation period and less than 0.6 mTorr during the IRMPD period, it was possible to achieve both maximum trapping efficiency and effective IRMPD. An optimized method for gas introduction enables the trapping efficiency to remain constant during the accumulation period, which permits a broad dynamic range measurement.

Enkephalin, Leucine↗

PubMed2004

Real-time-monitored decrease of trichlorophenol as a dioxin surrogate in flue gas using iron oxide catalyst.

The decrease of trichlorophenol by injecting oxidation catalyst into a municipal solid waste incinerator was monitored in real time. Direct sampling atmospheric pressure chemical ionization (APCI)/ion trap mass spectrometry (ITMS) was used for the real-time monitoring. The oxidation catalyst was iron oxide type, which exponentially reduced trichlorophenol emission. CO emission, however, did not show any correlation with the catalyst injection rate. Simultaneous analysis of polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDDs/PCDFs) suggested that real-time monitoring of trichlorophenol as a surrogate of PCDDs/PCDFs, has a potential to timely control the optimum injection rate of PCDD/PCDF suppression catalyst continuously and economically.

Air Pollutants↗

PubMed2003

Collision-activated infrared multiphoton dissociation in a quadrupole ion trap mass spectrometer.

We propose and demonstrate a new method for multiple-stage mass spectrometry (MSn), collision-activated infrared multiphoton dissociation (CA-IRMPD), which is very effective for the quadrupole ion trap mass spectrometer (QITMS). CA-IRMPD uses a combination of focused laser irradiation (beam radius, approximately 0.4 mm) and collisional activation by a supplemental AC voltage between endcap electrodes. This combination enables IRMPD, which has conventionaLly been ineffective above 10(-4) Torr, to be used under a standard bath gas pressure of 2-8 mTorr. CA-IRMPD can produce richer spectra of product ions than CID or IRMPD while maintaining high sensitivity and mass resolution; thus, it will contribute to an accurate determination of peptide sequences.

Journal Article↗