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Biomedical subjects

Ge Wang

Publications and source records attributed to Ge Wang.

At least 55 records · Page 3Linked to original sources

Contribution of the Helicobacter pylori thiol peroxidase bacterioferritin comigratory protein to oxidative stress resistance and host colonization.

Peroxiredoxins, the enzymes that catalyze the reduction of hydrogen peroxide and organic hydroperoxides, are ubiquitous proteins that protect organisms from damage by reactive oxygen species. Helicobacter pylori contains three members of the peroxiredoxin family: AhpC (alkyl hydroperoxide reductase), Tpx (thiol-specific peroxidase), and bacterioferritin comigratory protein (BCP). In this study, we characterized H. pylori bcp mutant strains and wild-type BCP. Compared to the parent strain and the ahpC mutant strain, the bcp mutant showed moderate sensitivity to the superoxide-generating agent paraquat and to organic hydroperoxides. Upon exposure of 10(8) cells to air for 10 h, 10(6) wild-type cells survived but none of the 10(8) bcp mutant cells were recovered. Introduction of an intact bcp gene at an unrelated locus in the bcp strain restored the wild-type-like oxidative stress resistance phenotype. Purified BCP was shown to be a thiol peroxidase that depends on the reducing activity of thioredoxin and thioredoxin reductase. Among a series of peroxides tested, linoleic acid hydroperoxide was the preferred substrate of BCP. By examining the profiles of protein expression within H. pylori cells, we confirmed that AhpC is much more abundant than BCP. The overlapping functions and activities of BCP and AhpC probably explain why the bcp mutant displayed a relatively weak oxidative stress resistance phenotype. The bcp mutant strain could colonize mouse stomachs, although colonization by the wild-type strain was slightly better than that by the mutant strain at 1 week after host inoculation. However, at 3 weeks after inoculation, the colonization ability of the wild type was significantly greater than that of the bcp mutant; for example, H. pylori was recovered from 10 of 11 mouse stomachs inoculated with the wild-type strain but from only 4 of 12 mice that were inoculated with the bcp mutant strain. This indicates that H. pylori BCP plays a significant role in efficient host colonization.

Animals↗

Approach toward nanoplate poly(styrene sulfate): synthesis of nano-polymers with special morphology by using Ldhs as template.

A simple chemical method to obtain nanopolymers with special morphology is reported. The key to the success of this preparation was the use of layered double hydroxides (LDHs), a two-dimensional host material, as template. Typical procedures include in-situ polymerization of the monomers in the interlayers of the LDH template, followed by the dissolution of LDH sheets so that the formed polymers can be free and collected. The obtained results demonstrate potential of LDHs as tools for the controlled synthesis of nanopolymers with platelike morphology.

Crystallization↗

[Report on 16 rare species of human chromosomal].

By examining the lymphocytic chromosomes of peripheral blood from patients with amenorrhea, spontaneous abortion and stillbirth history, .the 16 rare species of human chromosomal abnormal karyotypes were discovered. They were 46,XY,t(6;11)(q25;p15);46,XY,inv(3)(p25;q29);46,XY,t(7;18)(q10;p10);46,X,t(X;13)(q24;q14);46,XY,t(4;7)(q33;q22);46,XY,t(8;15)(q24;q15);46,XY,t(2;17)(q33;q25);46,XX,t(4;7)(q34;q11);46,XX,t(1;3)(p36;p23);46,XX,t(4;6)(q35;p11);46,X,inv(X)(q22;q28);46,XX,t(7;10)(p11;q26);46,XX,t(3;6)(p21;q23);46,XX,t(8;16)(p21;p13);46,XX,t(8;9)(q21;q34);46,XY,t(17;22)(q21;q11). Their clinical situation were described. Discussion on the relationship between the chromosomal aberrations and phenotype effect indicates the importance of chromosome karyotyping in patients with abnormal reproductive history.

Abortion, Habitual↗

[Combination of external beam radiotherapy and 252Cf neutron intracavitary brachytherapy for cervical cancer].

OBJECTIVE: To evaluate the curative effect of 252Cf brachytherapy on advanced cervical cancers. METHODS: A total of 77 cervical cancer patients were staged into IIa-IVa according to the standard of International Federation of Gynecology and Obstetrics (FIGO), including 13 cases of stage IIa, 32 of stage IIb, 18 of stage IIIa, 10 of stage IIIb, and 4 of stage IVa. 252Cf brachytherapy was delivered at 8-11 Gy/fraction per week, the total dose of reference point A was 36-45 Gy in 4-5 fractions. The whole pelvic cavity was irradiated with 6 MV X-ray, 200 cGy/fraction, 4 times per week. The total dose of external beam radiotherapy was 45-50 Gy (the center of whole pelvic field was blocked by 4 cm in width after 20-36 Gy), the total treatment course was 5-6 weeks. The 3-year survival rate and late complication rate in bladder and rectum were evaluated. RESULTS: The local control rate of all patients after 3-year was 94% (72/77); the overall survival rate was 82% (63/77). In particular, the 3-year survival rate was 85% (11/13) for stage IIa, 94% (30/32) for stage IIb, 78% (14/18) for stage IIIa, 70% (7/10) for stage IIIb, 25% for stage IVa cancers. The late complication rate was 3% for cystitis, 5% for proctitis. CONCLUSIONS: Combination of 252Cf brachytherapy and external beam radiotherapy can be well-tolerated by cervical cancer patients. The 3-year survival rate for stage II and III patients is high and late complication rate in bladder and rectum is low.

Adult↗

[Chromosomal localization and inhibitory effect on TPK activition of a human novel gene hbrp].

The purpose of present study is to determine the location of the novel gene hbrp which is related to bovine seminal plasma (BSP) proteins in the human chromosome by the FISH (fluorescent in situ hybridization) technique, and to investigate the relation of HBRP to TPK( tyrosine protein kinase)by genetic engineering. The result is that the novel gene hbrp was successfully localized on human chromosome 19q1.3; HBRP protein obviously inhibited the activity of PKC. It is concluded that the structure of BSP contained two tandemly arranged fibronectin type II(Fn2)--domains which were related to the function of binding protein BSP. Amino acid sequence of HBRP protein with four tandemly arranged Fn2-domains showed that the protein might be binding protein functionly relating to BSP protein. We have concluded that HBRP protein obviously inhibited the activity of TPK. The location of the novel gene on human chromosome 19q1.3 is very important to study the other biological functions of the protein encoded by gene hbrp.

Animals↗

Accuracy of facial soft tissue thickness measurements in personal computer-based multiplanar reconstructed computed tomographic images.

The purpose of this study was to determine the precision and accuracy of facial soft tissue measurement using personal computer (PC)-based multiplanar reconstructed (MPR) computed tomography (CT) images and to evaluate the effect of the various CT scanning protocols on the facial soft tissue thickness measurement. Thirteen different CT imaging protocols were used to image a cadaver head. MPR reformations and three-dimensional (3D) reconstructions viewed on a laptop PC were used to make measurements at six specific sites on each set of images. These measurements were compared to physical measurements at the same sites. Increasing the slice thickness resulted in decreased image quality. Within the same slice thickness, increasing the pitch ratio in the spiral mode, resulted in decreasing image quality. The image quality of conventional CT scanning was relatively poorer than that of the spiral CT scanning. However, the mean deviation from the physical measurement was within 0.43 mm in every instance. This mean deviation was quite small and clinically acceptable for measuring the soft tissue thickness of the facial area. PC-based MPR CT images of the face using routine scanning CT protocols can be used to accurately measure soft tissue thickness in the facial region. However, for more fine and accurate data collection, scanning protocols with slice thicknesses less than 5mm, and a spiral/helical mode pitch less than 2:1 are recommended.

Cadaver↗

Role of a bacterial organic hydroperoxide detoxification system in preventing catalase inactivation.

In the gastric pathogen Helicobacter pylori, catalase (KatA) and alkyl hydroperoxide reductase (AhpC) are two highly abundant enzymes that are crucial for oxidative stress resistance and survival of the bacterium in the host. Here we report a connection unidentified previously between the two stress resistance enzymes. We observed that the catalase in ahpC mutant cells in comparison with the parent strain is inactivated partially (approximately 50%). The decrease of catalase activity is well correlated with the perturbation of the heme environment in catalase, as detected by electron paramagnetic resonance spectroscopy. To understand the reason for this catalase inactivation, we examined the inhibitory effects of hydroperoxides on H. pylori catalase (either present in cell extracts or added to the purified enzyme) by monitoring the enzyme activity and the EPR signal of catalase. H. pylori catalase is highly resistant to its own substrate, without the loss of enzyme activity by treatment with a molar ratio of 1:3000 H2O2. However, it inactivated is by lower concentrations of organic hydroperoxides (the substrate of AhpC). Treatment with a molar ratio of 1:400 t-butyl hydroperoxide resulted in an inactivation of catalase by approximately 50%. UV-visible absorption spectra indicated that the catalase inactivation by organic hydroperoxides is caused by the formation of a catalytically incompetent compound II species. To further support the idea that organic hydroperoxides, which accumulate in the ahpC mutant cells, are responsible for the inactivation of catalase, we compared the level of lipid peroxidation found in ahpC mutant cells with that found in wild type cells. The results showed that the total amount of extractable lipid hydroperoxides in the ahpC mutant cells is approximately three times that in the wild type cells. Our findings reveal a novel role of the organic hydroperoxide detoxification system in preventing catalase inactivation.

Antioxidants↗

Formulation of photon diffusion from spherical bioluminescent sources in an infinite homogeneous medium.

BACKGROUND: The bioluminescent enzyme firefly luciferase (Luc) or variants of green fluorescent protein (GFP) in transformed cells can be effectively used to reveal molecular and cellular features of neoplasia in vivo. Tumor cell growth and regression in response to various therapies can be evaluated by using bioluminescent imaging. In bioluminescent imaging, light propagates in highly scattering tissue, and the diffusion approximation is sufficiently accurate to predict the imaging signal around the biological tissue. The numerical solutions to the diffusion equation take large amounts of computational time, and the studies for its analytic solutions have attracted more attention in biomedical engineering applications. METHODS: Biological tissue is a turbid medium that both scatters and absorbs photons. An accurate model for the propagation of photons through tissue can be adopted from transport theory, and its diffusion approximation is applied to predict the imaging signal around the biological tissue. The solution to the diffusion equation is formulated by the convolution between its Green's function and source term. The formulation of photon diffusion from spherical bioluminescent sources in an infinite homogeneous medium can be obtained to accelerate the forward simulation of bioluminescent phenomena. RESULTS: The closed form solutions have been derived for the time-dependent diffusion equation and the steady-state diffusion equation with solid and hollow spherical sources in a homogeneous medium, respectively. Meanwhile, the relationship between solutions with a solid sphere source and ones with a surface sphere source is obtained. CONCLUSION: We have formulated solutions for the diffusion equation with solid and hollow spherical sources in an infinite homogeneous medium. These solutions have been verified by Monte Carlo simulation for use in biomedical optical imaging studies. The closed form solution is highly accurate and more computationally efficient in biomedical engineering applications. By using our analytic solutions for spherical sources, we can better predict bioluminescent signals and better understand both the potential for, and the limitations of, bioluminescent tomography in an idealized case. The formulas are particularly valuable for furthering the development of bioluminescent tomography.

Computer Simulation↗

A mouse optical simulation environment (MOSE) to investigate bioluminescent phenomena in the living mouse with the Monte Carlo method.

RATIONALE AND OBJECTIVES: As an important part of bioluminescence tomography, which is a newly developed optical imaging modality, mouse optical simulation environment (MOSE) is developed to simulate bioluminescent phenomena in the living mouse and to predict bioluminescent signals detectable outside the mouse. This simulator is dedicated to small animal optical imaging based on bioluminescence. MATERIALS AND METHODS: With the parameters of biological tissues, bioluminescent sources, and charge coupled device (CCD) detectors, the 2-dimensional/3-dimensional MOSE simulates the whole process of the light propagation in 2-dimensional/3-dimensional biological tissues using the Monte Carlo method. Both the implementation details and the software architecture are described in this article. RESULTS: The software system is implemented in the Visual C++ programming language with the OpenGL techniques and has a user-friendly interface facilitating interactions relevant to bioluminescent imaging. The accuracy of the system is verified by comparing the MOSE results with independent data from analytic solutions and commercial software. CONCLUSION: As shown in our simulation and analysis, the MOSE is accurate, flexible, and efficient to simulate the photon propagation for bioluminescence tomography. With graduate refinements and enhancements, it is hoped that the MOSE will become a standard tool for bioluminescence tomography.

Computer Simulation↗

Requirement of hydD, hydE, hypC and hypE genes for hydrogenase activity in Helicobacter pylori.

Helicobacter pylori possesses a membrane-bound, nickel containing, hydrogen uptake hydrogenase enzyme; its synthesis requires structural as well as accessory proteins, the latter needed for the complete maturation of the enzyme. Our lab previously characterized mutants in the accessory hyp genes, hypA, hypB, hypD and hypF that were all severely affected for hydrogenase activity, and in some cases (hypA and hypB mutants) also affected for urease activity. This finding prompted us to disrupt the two remaining unstudied hyp genes of H. pylori, hypC and hypE, in order to see if the same pleiotropic effect would be observed. In both mutants hydrogenase activity was abolished but urease activity remained unaffected. Addition of 5 microM nickel into the growth medium partially restored the hydrogenase activity in the hypE mutant and to a lesser extent in the hypC mutant. In addition, we also disrupted the genes HP0634 (referred as hydD in the H. pylori 26695 genome database) and HP0635 (whose function was unknown, referred to here as hydE) to address their possible roles in the hydrogenase synthesis/maturation process. In both cases, hydrogenase activities were abolished and addition of nickel could not restore the activity, suggesting that these proteins are involved in the hydrogenase synthesis process rather than in nickel mobilization/insertion steps.

Bacterial Proteins↗

Three-dimensional localization of cochlear implant electrodes using epipolar stereophotogrammetry.

Three-dimensional (3-D) localization of individual cochlear implant electrodes within the inner ear is of importance for modeling the electrical field of the cochlea, designing the electrode array, and programming the associated speech processor. A 3-D reconstruction method of cochlear implant electrodes is proposed to localize individual electrodes from two X-ray views in combination with the spiral computed tomography technique. By adapting epipolar geometry to the configuration of an X-ray imaging system, we estimate individual electrode locations in the least square sense without using a patient attachment required by an existing stereophotogrammetry technique. Furthermore, our method does not require any knowledge of the intrinsic and extrinsic parameters of the imaging system. The performance of our method is studied in numerical simulation and with patient data and is found to be sufficiently accurate for clinical use. The maximum root mean-square errors measured are 0.0445 and 0.214 mm for numerical simulation and patient data, respectively.

Cochlea↗

Grangeat-type helical half-scan computerized tomography algorithm for reconstruction of a short object.

Currently, cone-beam computerized tomography (CT) and micro-CT scanners are under rapid development for major biomedical applications. Half-scan cone-beam image reconstruction algorithms assume only part of a scanning turn, and are advantageous in terms of temporal resolution and image artifacts. While the existing half-scan cone-beam algorithms are in the Feldkamp framework, we have published a half-scan algorithm in the Grangeat framework for a circular trajectory [Med. Phys. 30, 689-700 (2003)]. In this paper, we extend our previous work to a helical case without data truncation. We modify the Grangeat's formula for utilization and estimation of Radon data. Specifically, we categorize each characteristic point in the Radon space into singly, doubly, triply sampled, and shadow regions, respectively. A smooth weighting strategy is designed to compensate for data redundancy and inconsistency. In the helical half-scan case, the concepts of projected trajectories and transition points on meridian planes are introduced to guide the design of weighting functions. Then, the shadow region is recovered via linear interpolation after smooth weighting. The Shepp-Logan phantom is used to verify the correctness of the formulation, and demonstrate the merits of the Grangeat-type half-scan algorithm. Our Grangeat-type helical half-scan algorithm is not only valuable for quantitative and/or dynamic biomedical applications of CT and micro-CT, but also serves as an intermediate step towards solving the long object problem.

Algorithms↗

Minimum detection windows, PI-line existence and uniqueness for helical cone-beam scanning of variable pitch.

The goal of this paper is to study Cone-beam CT scanning along a helix of variable pitch. First the rationale and applications in medical imaging of variable pitch CT reconstruction are explained. Then formulas for the minimum detection window are derived. The main part of the paper proves a necessary and sufficient condition for the existence and uniqueness of PI-lines inside this variable pitch helix. These results are necessary steps toward an exact reconstruction algorithm for helix scanning of variable pitch, generalizing Katsevich's formula on constant pitch exact reconstruction. It is shown through an example that, when the derivative of the pitch function is not convex, or when the pitch function passes a inflection point and begins to slow down, PI-lines may be not unique near the rim of the helix cylinder. The conclusion is that the restriction on the pitch function is weaker, if the object is placed well within the helix cylinder and far from its rim, in order to preserve the uniqueness of PI-lines. If the object is near the rim, the restriction condition on the allowable pitch functions becomes stronger.

Angiography↗

Fractional scan algorithms for low-dose perfusion CT.

One of the key considerations in CT perfusion is the X-ray dose received by the patient, since cine acquisition mode is typically used in which repeated x-ray exposure occurs at the same anatomical location. In this technical note, we propose a new approach for dose reduction in which the X-ray tube current is maintained and the number of projection views is reduced per gantry rotation. A projection interpolation algorithm and an image prediction algorithm are developed to address the incompleteness of such projection data. Both algorithms utilize a priori knowledge that the contrast-uptake in perfusion images is gradual and predictable. As a result, excellent perfusion images can be reconstructed at a fraction of the nominal radiation dose.

Algorithms↗

Feldkamp-type VOI reconstruction from super-short-scan cone-beam data.

Based on the fan-beam reconstruction formula recently developed by Noo et al. [Phys. Med. Biol. 47, 2525-2546 (2002)] we develop a Feldkamp-type algorithm for the reconstruction of a volume of interest (VOI) from super-short-scan data. With either a circular or spiral scanning locus in our VOI reconstruction scheme, we first estimate fan-beam data from cone-beam data using the popular "cosine correction" scheme, and perform reconstruction based on Noo's FBP-type fan-beam reconstruction. Our proposed algorithm is tested using the three-dimensional (3-D) Shepp-Logan phantom. The experimental results show that the new algorithm can be applied to multi-source 4-D CT with significantly superior temporal resolution and temporal consistency relative to the Katsevich algorithm, which is the state of the art for exact helical cone-beam reconstruction.

Algorithms↗

Geometric studies on variable radius spiral cone-beam scanning.

The goal is to perform geometric studies on cone-beam CT scanning along a three-dimensional (3D) spiral of variable radius. First, the background for variable radius spiral cone-beam scanning is given in the context of electron-beam CT/micro-CT. Then, necessary and sufficient conditions are proved for existence and uniqueness of PI lines inside the variable radius 3D spiral. These results are necessary steps toward exact cone-beam reconstruction from a 3D spiral scan of variable radius, adapting Katsevich's formula for the standard helical cone-beam scanning. It is shown in the paper that when the longitudinally projected planar spiral is not always convex toward the origin, the PI line may not be unique in the envelope defined by the tangents of the spiral. This situation can be avoided by using planar spirals whose curvatures are always positive. Using such a spiral, a longitudinally homogeneous region inside the corresponding 3D spiral is constructed in which any point is passed by one and only one PI line, provided the angle omega between planar spiral's tangent and radius is bounded by [omega - 90 degrees] < or = < epsilon for some positive epsilon < or = 32.48 degrees. If the radius varies monotonically, this region is larger and one may allow epsilon < or = 51.85 degrees. Examples for 3D spirals based on logarithmic and Archimedean spirals are given. The corresponding generalized Tam-Danielsson detection windows are also formulated.

Biophysical Phenomena↗

Uniqueness theorems in bioluminescence tomography.

Motivated by bioluminescent imaging needs for studies on gene therapy and other applications in the mouse models, a bioluminescence tomography (BLT) system is being developed in the University of Iowa. While the forward imaging model is described by the well-known diffusion equation, the inverse problem is to recover an internal bioluminescent source distribution subject to Cauchy data. Our primary goal in this paper is to establish the solution uniqueness for BLT under practical constraints despite the ill-posedness of the inverse problem in the general case. After a review on the inverse source literature, we demonstrate that in the general case the BLT solution is not unique by constructing the set of all the solutions to this inverse problem. Then, we show the uniqueness of the solution in the case of impulse sources. Finally, we present our main theorem that solid/hollow ball sources can be uniquely determined up to nonradiating sources. For better readability, the exact conditions for and rigorous proofs of the theorems are given in the Appendices. Further research directions are also discussed.

Algorithms↗