Search PubMedSearch

SEARCH · Search PubMed

Results for “high resolution mass spectroscopy”

Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

11 recordsLinked to original sources

5',8-cyclo-dAdo and 8-oxo-dAdo DNA Lesions Are Both Substrates of Adenosine Deaminase: A Preliminary Study.

Genetic information, whether inside or outside the nucleus, is exposed to a variety of harmful physico-chemical factors. Although DNA damage repair systems have been extensively studied, little information about post-repair and non-genomic DNA damage metabolism is available in the literature. Adenosine deaminase (ADA) is an abundant enzyme found on both sides of the cell membrane that regulates the concentration of adenine derivatives. In this article, it has been shown that 7,8-dihydro-8-oxo-2'-deoxyadenosine (OXOdAdo) and (5'R/S) 5',8-cyclo-2'-deoxyadenosine ((5'R/S)cdAdo) are suitable substrates for ADA. For this purpose, theoretical Density Functional Tight Binding and RP-HPLC analyses were applied. The products of ADA activity, i.e., OXOdIno (7,8-dihydro-8-oxo-2'-deoxyinosine) and (5'R/S) cdIno ((5'R/S) 8-cyclo-2'-deoxyinosine), were identified and confirmed by high-resolution mass spectroscopy. Although the (5'R) and (5'S)cdAdo enzymatic deamination processes are much slower (34% and 32% after 168 h, respectively) than the process observed for dAdo, 5',8-cyclo-2'-deoxyinosine should be considered when monitoring cyclopurine levels in physiological fluids. The same should be considered in the case of OXOdAdo, which is completely converted to OXOdIno within one minute and may therefore be less visible than OXOdGuo during mass spectroscopy analysis. Both these observations are important, given the abundance of 2'-deoxyadenosine on both sides of the cell membrane and its potential conversion into OXOdAdo and (5'R/S)cdAdo. They may also explain why the observed level of OXOdAdo is much lower than that of OXOdGuo in cells and physiological fluids, even though their difference in ionisation potential is only 0.25 eV. Future studies are needed to further investigate the metabolism of DNA damage and to identify the enzymes involved in nucleic acid biochemistry.

Adenosine Deaminase

Microbial formation of 4-thiouracil.

A soil organism identified as Streptomyces libani var. soldani was found to produce 4-thiouracil. The product was isolated in a yield of 150 mug/ml of filtered beer and characterized by C-13 magnetic resonance and high-resolution mass spectroscopy. The product has a broad antibacterial spectrum but low specific activity.

Bacillus subtilis

Cu(II/I)-Pyridinophane Complexes: O2 Reactivity and 64Cu PET Imaging Studies.

The redox versatility of copper between the Cu(I) and Cu(II) oxidation states is central to its function in a variety of biological processes, including electron transfer, oxygen transport, and redox catalysis by metalloenzymes. Motivated by these biological paradigms, we report the design and development of a new series of chelators based on the 2-aza[3,2](2,6)pyridinophane (RN3) ligands (RN3, R = H, Me, 2-methylpyridyl, and 2-methylpicolinate). These ligands are designed to replicate key features of metalloenzyme active sites and to modulate the copper coordination environment. The new RN3 ligands have been fully characterized by NMR spectroscopy, high-resolution mass spectrometry, and UV-vis spectrophotometric titrations. The Cu(I) and Cu(II) complexes supported by these ligands were synthesized and characterized structurally and spectroscopically to investigate the effects of ligand denticity, variation in donor atoms, and chelate ring size on coordination geometry, bond parameters, and redox behavior. Special attention is given to the reactivity of Cu(I) complexes toward O2, offering insights into pathways of O2 activation and reduction. The RN3 ligands also demonstrate promising stability and binding affinity for both Cu(II) and Cu(I) ions, underscoring their potential for 64Cu-based positron emission tomography (PET) imaging applications.

Journal Article

Weakly basic impurities in illicit amphetamine.

In this paper the isolation and identification of two pyrimidines, five pyridines, and one pyridone as impurities in illicit amphetamines prepared by the Leuckart synthesis are reported. Isolation was achieved by repeated thin-layer chromatography with various solvent mixtures, while identification was done by both high and low resolution mass spectrometry and 1H and 13C NMR spectroscopy. Some chromatographic data are reported and a quantitative analysis of a reaction mixture and an illicit amphetamine is given.

Amphetamine

Discovery and characterisation of catedehas A-C, a new class of antioxidant α,β-dehydroamino acid derivatives.

Dehydroamino acids are a class of noncanonical unsaturated amino acids commonly found in various naturally occurring peptides and proteins. In this study, we successfully cloned and heterologously expressed the cda biosynthetic gene cluster from Streptomyces nitrosporeus ATCC 12769 in Streptomyces lividans TK24, leading to the identification of three α,β-dehydroamino acid derivatives, designated as catedehas A-C (1-3). Among these, compound 2, although previously reported, lacked any detailed characterisation data. Their structures were elucidated by high-resolution electrospray ionisation mass spectrometry, 1D and 2D nuclear magnetic resonance spectroscopy, along with other spectroscopic techniques. Compounds 1-3 exhibited remarkable antioxidant activity in DPPH· free radical scavenging assay, with IC50 values of 27.52, 12.51, and 8.32 μM, respectively.

Antioxidants

Chemical synthesis of three 14 alpha-hydroxymethyl cholestenols.

Reported herein are chemical syntheses of 14 alpha-hydroxymethyl-5 alpha-cholest-8-en-3 beta-ol, 14 alpha-hydroxymethyl-5 alph-cholest-7-en-3 beta-ol, and 14 alpha-hydroxymethyl-5 alpha-cholest-6-en 3 beta-ol. These compounds were obtained in pure form after repeated medium-pressure column chromatography of the mixture obtained by treatment of 3 beta-acetoxy-7 alpha,32-epoxy-14 alpha-methyl-5 alpha-cholestane with pyridine hydrochloride in refluxing acetic anhydride followed by reduction with lithium aluminum hydride. The compounds were characterized by their chromatographic properties and by the results of infrared, optical rotation, nuclear magnetic resonance, and low and high resolution mass spectral studies.

Cholestenes

Territrems, tremorgenic mycotoxins of Aspergillus terreus.

The tremorgenic mycotoxins isolated from Aspergillus terreus were given the trivial names territrem A and B instead of their previous designations of C1 and C2 respectively. High-resolution mass spectral data suggested the molecular formula of territrem A to be C28H30O9 and that of territrem B,C29H34O9. They were partially characterized by ultraviolet, infrared, proton magnetic resonance, and mass spectroscopy. The spectroscopic evidence indicated that their chemical structures were very similar. The procedures of purification were also revised for the complete separation of these two chemically related compounds.

Aspergillus

Mass spectroscopy of natural products. III--Mass spectrometric comparison of lysergic acid and 9,10-dihydrolysergic acid.

The influence of the 9,10-double bond in the ergoline skeleton on the fragmentation behaviour of lysergic acid and 9,10-dihydrolysergic acid is discussed. The main fragmentation pathways were determined using high resolution mass spectrometry and metastable ion studies. The 70 eV electron impact spectra are compared with the 12 eV electron impact spectra and the negative ion mass spectra (2--4 eV).

Ergolines

24xi-Methylcholestane-3beta, 5alpha, 6beta, 12beta, 25-pentol 25-monoacetate, a novel polyoxygenated marine sterol.

24xi--Methylcholestane-3beta, 5alpha, 6beta, 12beta, 25-pentol 25-monoacetate has been isolated from an Alyconarian and its structure was established in part through extensive high resolution mass spectral and nmr studies and partly through the nonidentity of one of its degradation products with 24xi-methylcholestane-3beta, 5alpha, 6beta, 12alpha-tetrol synthesized from deoxycholic acid.

Animals

25-Hydroxyvitamin D3 26,23-lactone: a new in vivo metabolite of vitamin D.

A major vitamin D metabolite was isolated in pure form from the blood plasma of chicks either maintenance levels or large doses of vitamin D3. The isolation involved methanol-chloroform extraction and five column chromatographic procedures. The metabolite purification and elution position on these columns were followed by a competitive protein binding assay. The metabolite was identified, using high- and low-resolution mass spectrometry, 270-MHz proton nuclear magnetic resonance spectrometry, ultraviolet absorption spectrophotometry, Fourier transform infrared spectrophotometry, and specific chemical reactions, as 3 beta,-25-dihydroxy-9,10-seco-5,7,10(19)-cholestatrieno-26,23-lactone. The trivial names 25-hydroxyvitamin D3 26,23-lactone or calcidiol 26,23-lactone are suggested for this compound.

Animals