Search PubMed⌕ Search

SEARCH · Search PubMed

Results for “Powder Diffraction”

Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 19 recordsLinked to original sources
PubMed2002

New applications of electron diffraction in the pharmaceutical industry: polymorph determination by using a combination of electron diffraction and synchrotron X-ray powder diffraction techniques.

Electron diffraction has been recently used in the pharmaceutical industry to study the polymorphism in crystalline drug substances. While conventional X-ray diffraction patterns could not be used to determine the cell parameters of two forms of the microcrystalline GP IIb/IIIa receptor antagonist roxifiban, a combination of electron single-crystal and synchrotron powder diffraction techniques were able to clearly distinguish the two polymorphs. The unit-cell parameters of the two polymorphs were ultimately determined using new software routines designed to take advantage of each technique's unique capabilities. The combined use of transmission electron microscopy (TEM) and synchrotron patterns appears to be a good general approach for characterizing complex (low-symmetry, large-unit-cell, micron-sized) polymorphic pharmaceutical compounds.

Amidines↗
PubMed2006

Order-disorder transition in monoclinic sulfur: a precise structural study by high-resolution neutron powder diffraction.

High-resolution neutron powder diffraction has been used in order to characterize the order-disorder transition in monoclinic cyclo-octasulphur. Rapid data collection and the novel use of geometrically constrained refinements has enabled a direct and precise determination of the order parameter, based on molecular site occupancies, to be made. The transition is critical and continuous; with a transition temperature, Tc=198.4 (3) K, and a critical exponent, beta=0.28 (3), which is indicative of three-dimensional ordering. Difficulties encountered as a consequence of the low thermal conductivity of the sample are discussed.

Models, Molecular↗
PubMed2003

Protein crystal structure analysis from high-resolution X-ray powder-diffraction data.

Although high-resolution powder diffraction of proteins is in its infancy, we can easily see future developments of the method that will allow examination of protein structures that exceed 100 kDa. In particular, current data-collection technology scans the powder-diffraction pattern a few points at a time over a very narrow field of view. The use of high-resolution imaging technology and X-ray focusing optics should improve this 1000-fold or more, making it possible to use powder diffraction on a laboratory X-ray source to screen for the formation of protein/drug complexes and to determine their structures.

Animals↗
PubMed1999

Polymorph determination for the GP IIb/IIIa antagonist, roxifiban, using a combination of electron diffraction and synchrotron X-ray powder diffraction techniques.

Unit cell parameters of two polymorphs of roxifiban have been determined by a combination of transmission electron microscopy (TEM) single-crystal and synchrotron X-ray powder diffraction techniques. While it was difficult to differentiate the two forms by their standard X-ray diffraction patterns, the high-resolution synchrotron patterns clearly showed striking differences. Unit cells for the two forms required the use of cell parameters derived from TEM diffraction patterns. The two unit cells are, not surprisingly, very similar except for a doubling of one of the axes for form II. The combined use of TEM and synchrotron patterns appears to be a good general approach for characterizing complex (low-symmetry, large unit cell) polymorphs.

Amidines↗
PubMed2002

The Powder Diffraction File: present and future.

The International Centre for Diffraction Data (ICDD) produces the Powder Diffraction File (PDF). This paper discusses some of the seminal events in the history of producing this primary reference for powder diffraction. Recent key events that center on collaborative initiatives have led to an enormous jump in entry population for the PDF. Collective efforts to editorialize the PDF are ongoing and provide enormous added value to the file. Recently, the ICDD has created a new series of the PDF, designated PDF-4. These relational database structures are being used to house the PDF of the future. The design and benefits of the PDF-4 are described.

Journal Article↗
PubMed1999

Crystallization in Nonaqueous Media of Co- and Mn-Substituted Microporous Aluminophosphates Investigated by in Situ Synchrotron X-ray Powder Diffraction.

In situ synchrotron X-ray powder diffraction was used to investigate the crystallization of microporous transition metal-substituted aluminophosphates from nonaqueous media. The gels contained ethylene glycol and triethylamine as the template and were heated in quartz glass capillaries at temperatures up to 200 degrees C. The following crystalline products were formed: MnAPO-5, [AFI], CoAPO-5, [AFI], and AlPO(4)-5, [AFI]. Three nonaqueous systems were investigated in situ, where the crystallization of MAPO-5-type materials were followed. Solvothermal crystallization of MnAPO-5 and CoAPO-5 was studied, and the effect of adding HF as a mineralizing agent was investigated. Time-resolved powder diffraction data were collected using a translating imaging plate (TIP) camera, and crystallization curves were extracted using integrated diffraction peaks. Kinetic analysis of the crystallization curves was performed using an Avrami-type expression, alpha(t) = exp(-(kt)(n)()). Apparent activation energies were determined from Arrhenius plots: MnAPO-5, 94 kJ/mol; MnAPO-5(HF), 68 kJ/mol; CoAPO-5, 61 kJ/mol. Crystallization of CoAPO-5 is faster than for MnAPO-5, and the values for n obtained by fitting with the Avrami-type expression were significantly lower for CoAPO-5 than for MnAPO-5.

Journal Article↗
PubMed2002

New Powder Diffraction File (PDF-4) in relational database format: advantages and data-mining capabilities.

The International Centre for Diffraction Data (ICDD) is responding to the changing needs in powder diffraction and materials analysis by developing the Powder Diffraction File (PDF) in a very flexible relational database (RDB) format. The PDF now contains 136,895 powder diffraction patterns. In this paper, an attempt is made to give an overview of the PDF-4, search/match methods and the advantages of having the PDF-4 in RDB format. Some case studies have been carried out to search for crystallization trends, properties, frequencies of space groups and prototype structures. These studies give a good understanding of the basic structural aspects of classes of compounds present in the database. The present paper also reports data-mining techniques and demonstrates the power of a relational database over the traditional (flat-file) database structures.

Journal Article↗
PubMed2005

Structure determination of forms I and II of phenobarbital from X-ray powder diffraction.

From pure powders of forms I and II of phenobarbital, X-ray diffraction patterns were recorded at room temperature. The starting crystal structural models were found by a Monte-Carlo simulated annealing method. The structures of the two forms were obtained through Rietveld refinements. Soft restraints were applied on bond lengths and bond angles, all H-atom positions were calculated. The cell of form I is monoclinic with the space group P2(1)/n, Z=12, Z'=3. Form II has a triclinic cell, with the space group P1 , Z=6, Z'=3. For both forms, the crystal cohesion is achieved by networks of N-H...O hydrogen bonds along [101]. The broadening of the Bragg peak profiles is interpreted in terms of isotropic strain effects and anisotropic size effects.

Isomerism↗
PubMed2000

Octahedral deformations and cationic displacements in the ferroelectric PbHf(0.8)Ti(0.2)O(3): a neutron powder diffraction study from 10 to 770 K

Neutron powder diffraction data, collected over the temperature range 10-770 K, have been analysed in order to make a detailed characterization of the sequence of phase transitions occurring in the Hf-rich ferroelectric PbHf(0.8)Ti(0.2)O3, titanium hafnium lead oxide. Over the whole temperature range this compound undergoes two phase transitions, which involve cationic displacements and octahedral deformations (tilt and/or distortion) leading to strongly distorted perovskite-type structures. The first transition appears around 415 K between two ferroelectric rhombohedral phases: a low-temperature nonzero-tilt phase F(RL) (space group R3c) and an intermediate zero-tilt phase FRH (space group R3m). The second one, detected around 520 K, is associated with a ferroelectric to-paraelectric transition between the FRH phase and the Pc cubic phase (space group Pm3m). From high-resolution neutron powder diffraction data (diffractometer 3T2-LLB, Saclay, France, lambda = 1.2251 A), the crystallographic structure of the three successive phases has been accurately determined at the following temperatures: T = 10 K (FRL): space group R3c, Z = 6, a(hex) = 5.7827 (1), c(hex) = 14.2702 (4) A, V(hex) = 413.26 (2) A3; T = 150 K (F(RL)): space group R3c, Z = 6, a(hex) = 5.7871 (1), C(hex) = 14.2735 (4) A, V(hex) = 413.98 (3) A3; T = 290 K (FRL): space group R3c, Z = 6, a(hex) = 5.7943 (1), C(hex) = 14.2742 (5) A, V(hex) = 415.04 (3) A3; T = 440 K (F(RH)): space group R3c, Z = 6, a(hex) = 5.8025 (1), c(hex) = 14.2648 (4) A, V(hex) = 415.94 (3) A3; T = 520 K (Pc): space group Pm3m, Z = 1, a(cub) = 4.1072 (2) A, V(cub) = 69.29 (1) A3. In addition, a neutron powder thermodiffractometry experiment, performed between 290 and 770 K (diffractometer D1B-ILL, Grenoble, France, lambda = 2.533 A), has been used to study in situ the temperature-induced phase transitions. From sequential Rietveld refinements, the temperature dependence of the cation displacements and the rotation and/or distortion of oxygen octahedra was derived.

Journal Article↗
PubMed2006

Anisotropic lattice contraction in pharmaceuticals: the influence of cryo-crystallography on calculated powder diffraction patterns.

The following article examines the influence of thermal expansion on X-ray powder diffraction patterns. With the increasing percentages of structures that are being solved using low-temperature data sets and the nearly exclusive collection of room-temperature experimental datasets by X-ray powder diffraction, considerable discrepancies are observed when comparing calculated powder diffraction patterns to experimental patterns. Such comparisons are extremely valuable to solid-state pharmaceutical scientists attempting to identify crystal forms of active pharmaceutical ingredients and excipient components of formulations. In this study, fluoxetine HCl, raloxifene HCl, and olanzapine are examined and serve as practical laboratory examples. The observations are supported through analysis of data presented in the Cambridge Structural Database to help assess the extent and potential impact of this problem.

Anisotropy↗
PubMed2000

The first protein crystal structure determined from high-resolution X-ray powder diffraction data: a variant of T3R3 human insulin-zinc complex produced by grinding.

X-ray diffraction analysis of protein structure is often limited by the availability of suitable crystals. However, the absence of single crystals need not present an insurmountable obstacle in protein crystallography any more than it does in materials science, where powder diffraction techniques have developed to the point where complex oxide, zeolite and small organic molecular structures can often be solved from powder data alone. Here, that fact is demonstrated with the structure solution and refinement of a new variant of the T(3)R(3) Zn-human insulin complex produced by mechanical grinding of a polycrystalline sample. High-resolution synchrotron X-ray powder diffraction data were used to solve this crystal structure by molecular replacement adapted for Rietveld refinement. A complete Rietveld refinement of the 1630-atom protein was achieved by combining 7981 stereochemical restraints with a 4800-step (d(min) = 3.24 A) powder diffraction pattern and yielded the residuals R(wp) = 3.73%, R(p) = 2.84%, R(F)(2) = 8.25%. It was determined that the grinding-induced phase change is accompanied by 9.5 and 17.2 degrees rotations of the two T(3)R(3) complexes that comprise the crystal structure. The material reverts over 2-3 d to recover the original T(3)R(3) crystal structure. A Rietveld refinement of this 815-atom protein by combining 3886 stereochemical restraints with a 6000-step (d(min) = 3.06 A) powder diffraction pattern yielded the residuals R(wp) = 3.46%, R(p) = 2.64%, R(F)(2) = 7.10%. The demonstrated ability to solve and refine a protein crystal structure from powder diffraction data suggests that this approach can be employed, for example, to examine structural changes in a series of protein derivatives in which the structure of one member is known from a single-crystal study.

Humans↗
PubMed2001

Identifying and indexing icosahedral quasicrystals from powder diffraction patterns.

We present a scheme to identify quasicrystals based on powder diffraction data and to provide a standardized indexing. We apply our scheme to a large catalog of powder diffraction patterns, including natural minerals, to look for new quasicrystals. Based on our tests, we have found promising candidates worthy of further exploration.

Journal Article↗
PubMed2000

Solving crystal structures from two-wavelength X-ray powder diffraction data - breaking the phase ambiguity in the noncentrosymmetric case

Direct methods of breaking phase ambiguities in protein crystallography have been introduced in powder diffraction analysis. This is aiming at ab initio solution of noncentrosymmetric structures using two-wavelength anomalous powder diffraction data. The known structure of the hydrogen bromide salt of leotidine (C(14)H(20)O(2)N(2).HBr) in space group P2(1)2(1)2(1) was used for simulating two-wavelength anomalous powder diffraction with the Br atom as anomalous scatterer. X-ray wavelengths are selected at lambda(1) = 0.920 and lambda(2) = 1.500 A. Unique reflections from the diffraction pattern of lambda(2) were able to locate the Br atom accurately. All overlapping diffraction peaks were uniformly partitioned to decompose into single reflections. Structure-factor amplitudes were then extracted. With these and the substructure of Br atoms, unique phases for centric reflections (hk0, h0l and 0kl) and phase doublets for noncentric reflections were obtained. The direct method was used to break the phase ambiguity leading to an interpretable electron-density map, from which five cycles of Fourier iteration yielded the complete structure.

Journal Article↗
PubMed2006

Characterizing challenging microcrystalline solids with solid-state NMR shift tensor and synchrotron X-ray powder diffraction data: structural analysis of ambuic acid.

Synchrotron X-ray powder diffraction and solid-state (13)C NMR shift tensor data are combined to provide a unique path to structure in microcrystalline organic solids. Analysis is demonstrated on ambuic acid powder, a widely occurring natural product, to provide the complete crystal structure. The NMR data verify phase purity, specify one molecule per asymmetric unit, and provide an initial structural model including relative stereochemistry and molecular conformation. A refinement of X-ray data from the initial model establishes that ambuic acid crystallizes in the P2(1) space group with unit cell parameters a = 15.5047(7), b = 4.3904(2), and c = 14.1933(4) A and beta = 110.3134(3) degrees . This combined analysis yields structural improvements at two dihedral angles over prior NMR predictions with differences of 103 degrees and 37 degrees found. Only minor differences of +/-5.5 degrees , on average, are observed at all remaining dihedral angles. Predicted hydroxyl hydrogen-bonding orientations also fit NMR predictions within +/-6.9 degrees . This refinement corrects chemical shift assignments at two carbons and reduces the NMR error by approximately 16%. This work demonstrates that the combination of long-range order information from synchrotron powder diffraction data together with the accurate shorter range structure given by solid-state NMR measurements is a powerful tool for studying challenging organic solids.

Cyclohexanones↗
PubMed1998

Multiple-wavelength powder diffraction using imaging plates at the Australian National Beamline.

The Australian powder diffractometer at the Photon Factory is capable of recording multiple powder-diffraction scans in less than 5 min per pattern using imaging plates in Debye-Scherrer geometry. This, coupled with incrementing the X-ray beam energy in suitably small steps (down to approximately 2 eV) between exposures, allows fast collection of anomalous diffraction data. Data collected from a copper oxide-based superconductor at energies near the Cu K-absorption edge are presented, along with an account of the technique used to extract multiple-exposure powder-diffraction data from imaging plates.

Journal Article↗
PubMed2001

Ab initio structure determination of BiPb2VO6 from powder diffraction data.

The crystal structure of BiPb2VO6 has been determined from powder diffraction data using a combination of direct methods and the novel approach of applying simulated annealing methods simultaneously to X-ray and neutron data; BiPb2VO6 is a polar, noncentrosymmetric, second harmonic generation active material and its crystal structure is one of the more complex to be solved ab initio from powder diffraction data.

Journal Article↗
PubMed2002

A hybrid Monte Carlo method for crystal structure determination from powder diffraction data.

A hybrid Monte Carlo algorithm for crystal structure determination from powder diffraction data is presented. The algorithm combines the key components of molecular dynamics and Monte Carlo simulations to achieve efficient sampling of phase space, allowing the crystal structure of capsaicin to be determined from powder diffraction data more effectively than by a simulated-annealing approach. The implementation of the algorithm, the choice of the simulation parameters and the performance of the algorithm are discussed.

Journal Article↗
PubMed2006

High-spin- and low-spin-state structures of [Fe(chloroethyltetrazole)6](ClO4)2 from synchrotron powder diffraction data.

The spin-crossover complex [Fe(teec)(6)](ClO(4))(2) (teec = chloroethyltetrazole) exhibits a 50 % incomplete spin crossover in the temperature range 300-30 K. Time-resolved synchrotron powder diffraction experiments have been carried out to elucidate its structural behavior. We report crystal structure models of this material at 300 K (high spin) and 90 K (low spin), as solved from synchrotron powder diffraction data by using Genetic Algorithm and Parallel Tempering techniques and refined with Rietveld refinement. During short synchrotron powder diffraction experiments (five minutes duration) two distinguishable lattices were observed the quantities of which vary with temperature. The implication of this phenomenon, that is interpreted as a structural phase transition associated with the high-to-low spin crossover, and the structural characteristics of the high-spin and low-spin models are discussed in relation to other compounds showing a similar type of spin-crossover behavior.

Journal Article↗