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The use of plants to monitor heavy metal pollution in the terrestrial environment must be based on a cognizance of the complicated, integrated effects of pollutant source and soil-plant variables. To be detectable in plants, pollutant sources must significantly increase the plant available metal concentration in soil. The major factor governing metal availability to plants in soils is the solubility of the metal associated with the solid phase, since in order for root uptake to occur, a soluble species must exist adjacent to the root membrane for some finite period. The rate of release and form of this soluble species will have a strong influence on the rate and extent of uptake and, perhaps, mobility and toxicity in the plant and consuming animals. The factors influencing solubility and form of available metal species in soil vary widely geographically and include the concentration and chemical form of the element entering soil, soil properties (endogenous metal concentration, mineralogy, particle size distribution), and soil processes (e.g., mineral weathering, microbial activity), as these influence the kinetics of sorption reactions, metal concentration in solution and the form of soluble and insoluble chemical species. The plant root represents the first barrier to the selective accumulation of ions present in soil solution. Uptake and kinetic data for nutrient ions and chemically related nonnutrient analogs suggest that metabolic processes associated with root absorption of nutrients regulate both the affinity and rate of absorption of specific nonnutrient ions. Detailed kinetic studies of Ni, Cd, and Tl uptake by intact plants demonstrate multiphasic root absorption processes over a broad concentration range, and the use of transport mechanisms in place for the nutrient ions Cu, Zn, and K. Advantages and limitations of higher plants as indicators of increased levels of metal pollution are discussed in terms of these soil and plant phenomena.
The tissue-specific differences in the 5-methylcytosine (m5C) content in total DNA of the parasite plant Cuscuta reflexa have been found: DNA from apical parts of the plant is less methylated (m5C = 4,2 mol %) as compared to the DNA from haustoria and posthaustorial regions (m5C = 5,4 mol %). The base compositions of total DNA preparations from C. reflexa grown on various hosts are similar. The m5C amount in stem DNA of the alfalfa plant infected with C. reflexa is by approximately 25% higher than that in the non-infected plant DNA. The GC content in alfalfa DNA does not change as a result of infection. Thus, the parasite induces the hypermethylation of DNA in the host plant. It is assumed that the changes in DNA methylation induced by the parasite plant may play a regulatory role and may cause changes in transcription and replication of host DNA.
Toxicants are widely distributed in plants and plant products, including intentionally added, incidentally added, and naturally occurring food toxicants. This review covers the toxicity of some food additives: the distribution, residues, toxicity, and methods of removal of some pesticides and toxic metals; and the presence of naturally occurring toxicants in plants and plant products. Extensive review has been done, particularly on natural toxicants. However, there are still extensive gaps in our knowledge pertaining to effect upon the health of many of the substances known to be present in natural plant food products, as well as even the identity of many natural chemical components of plant foods and their potential toxicological significance. An understanding of their presence, formation, and toxicity is important as far as public health is concerned.
Phytoplasmas are wall-less, phloem-restricted bacterial pathogens that infect over 1,000 plant species, causing substantial losses in agriculture, horticulture, and forestry worldwide. Despite their reduced genomes and limited metabolic autonomy, these obligate parasites colonize diverse hosts through secreted effector proteins that extensively reprogram plant development, metabolism, immune signalling, and vector interactions. Advances in genomics, transcriptomics, proteomics, metabolomics, and functional studies have substantially clarified the molecular basis of phytoplasma pathogenicity and symptom development. This review synthesizes current understanding of phytoplasma-plant interactions, covering phytoplasma biology, genome evolution, and the infection cycle across plant and insect vector hosts. We examine the molecular functions of key effectors, SAP11, SAP54/PHYL1, SAP05, TENGU, SWP1, and recently identified virulence factors, focusing on how they target host transcription factors, phytohormone networks, protein degradation pathways, and immune responses to promote colonization and disease progression. We further discuss how phytoplasma infection disrupts phytohormone signalling, primary and secondary metabolism, and developmental programs to produce characteristic disease symptoms, with particular attention to pathogen-induced changes in host volatiles and nutritional quality that alter vector behaviour and enhance transmission. Finally, we summarize insights from multi-omics studies and emerging management strategies, including CRISPR-based genome editing, RNAi, rapid molecular diagnostics, resistant cultivars, microbiome-based approaches, and sustainable vector control, and highlight key knowledge gaps and priorities for developing effective, environmentally sustainable phytoplasma disease management.
Accurate species identification is essential for biodiversity conservation and sustainable use, yet standard plant DNA barcoding often fails to achieve species-level resolution. We present a large-scale empirical evaluation of genome skimming as a tool to improve plant species discrimination. Using standardised data from 1969 individuals representing 475 species from 32 genera across major lineages of the vascular plant tree of life, we compare conventional plastid + internal transcribed spacer (ITS) barcodes with genome skimming approaches. Standard barcoding using rbcL, matK, trnH-psbA and ITS resolved about half of species (49.3%), with six genera showing < 25% species discrimination. By contrast, genome skimming enabled the recovery of complete plastid genomes, yielding 57.6% species discrimination. It also generated sufficient nuclear genomic data for additional resolution from k-mer analysis, achieving 66.8% species discrimination - an average gain of 17.5% over standard barcodes - while eliminating cases of extreme failure (< 25% resolution). The recovery of complete plastomes and ribosomal DNAs from genome skims also ensures backward compatibility with existing barcode datasets. Our results demonstrate that genome skimming provides data that substantially improves species-level resolution across diverse plant lineages and offers a scalable, high-throughput approach for building comprehensive reference resources to support global biodiversity initiatives.
Bacillus subtilis strain S-LA1 is an endophytic bacterium isolated from Leucas aspera roots that harbors a 4.2 Mbp genome predicted to encode several traits for nutrient acquisition, plant growth promotion, and plant probiotic efficacy. Genomic characterization underscores its potential as a microbial resource supporting sustainable agriculture and crop disease management strategies.
Nitrogen (N) is not only an essential macronutrient for plant growth and development but also functions as a pivotal signaling molecule that orchestrates adaptive responses to various abiotic stresses, including acidic stress, aluminum toxicity, salinity, drought, and extreme temperatures. This review synthesizes recent advances in our understanding of the molecular mechanisms by which N signaling, mediated by different N forms (e.g., NH4+ and NO3-), integrates with core stress-response pathways. We specifically discuss the genetic crosstalk between N sensing and key signaling cascades, including abscisic acid (ABA) signaling, the salt overly sensitive (SOS) pathway, and reactive oxygen species (ROS) homeostasis. The review details how this integration modulates physiological and transcriptional reprogramming through central regulators such as NIN-like proteins (NLPs), calcineurin B-like protein (CBL)-interacting protein kinase (CIPK), and the target of rapamycin (TOR) kinase, ultimately optimizing the trade-off between growth and tolerance. By establishing a unified genetic and molecular framework, this review aims to provide a theoretical basis for developing novel strategies in precision N management and molecular breeding to synergistically enhance N use efficiency (NUE) and abiotic stress tolerance in crops.
Pantoea sp. strain S-LA4 is an endophytic bacterium isolated from the leaf tissue of the medicinal plant Leucas aspera. The 4.93-Mbp draft genome of S-LA4 is predictive to encode several enzymes and secondary metabolites of plant growth promotion and bio-pesticidal activity, underscoring its potential for sustainable disease management in agriculture.
A preliminary biological screening for molluscicidal activity of certain Sudanese plants used in Folk-medicine was carried out. 78 samples belonging to 51 species, 45 genera and 28 families were screened. The aqueous extracts of 18 samples belonging to 8 species, 6 genera and 5 families were found to be active against Bulinus truncatus and 7 of these were also found to be active against Biomphalaria pfeifferi. Successive extraction of the 18 active samples with petroleum ether, ethanol and water showed that the petroleum ether extracts of only 4 samples were active against Bulinus truncatus; while the alcoholic extracts of 16 samples were found to be active against the same snail species. Only the alcoholic extracts of 4 samples were proved to be active against Biomphalaria pfeifferi. In the successive extraction technique, only the aqueous extract of Gardenia vogelii fruit pulp was proved to be active against the two snail species tested.
BACKGROUND: Mung bean is an important leguminous crop, which is reported to face devastating yield losses of up to 70% due to Cercospora leaf spot (CLS) disease. Traditional methods, such as the application of agrochemicals and fungicides, have been used to control CLS, but their intensive use has toxic effects on edible crops. METHODS: To find out a sustainable alternative, this study characterizes a strain, Bacillus subtilis Medicinal_04, isolated from Cannabis sativa rhizosphere and explores its role as an eco-friendly biofungicide and biostimulant. The species level identification of the isolate was confirmed by Average Nucleotide Identity (ANIb) and a digital DNA-DNA hybridization (dDDH). The antagonistic efficacy of B. subtilis Medicinal_04 against Cercospora canescens was evaluated in vitro as well as in planta assays. RESULTS: ANIb of 97.80% and a dDDH score of 85.90% against the reference B. subtilis str. 168. confirmed this isolate as B. subtilis. The in-vitro results showed that B. subtilis robustly inhibited C. canescens growth by 81.5%, strongly correlated with positive chitinolytic activity and a diverse genomic array of secondary metabolite biosynthetic gene clusters. The in planta results demonstrated that B. subtilis seed priming reduced disease incidence by 80 and 71.4%, while foliar application resulted in reductions of 90 and 85.7% for NM-51 and NM-20-21 varieties, respectively. Furthermore, fungicide application successfully reduced disease, however it caused noticeable phytotoxic reductions in root-shoot architecture and chlorophyll content. In contrast, biological interventions completely bypassed these trade-offs as B. subtilis application displayed improved root-shoot length, pod number, and chlorophyll content, while simultaneously enhancing antioxidative enzyme activities (SOD, POD, and CAT) and PR-1 gene expression. CONCLUSION: These findings demonstrate that B. subtilis Medicinal_04 has the potential to serve as a multifunctional biocontrol agent and is capable of securing high-level disease suppression and optimizing plant productivity, offering a valuable toolkit for climate-smart, sustainable agriculture.
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The properties of the homogeneous cutinase I, cutinase II, and the nonspecific esterase isolated from the extracellular fluid of cutin-grown Fusarium solani F. pisi (R.E. Purdy and P.E. Kolattukudy (1975), Biochemistry, preceding paper in this issue) were investigated. Using tritiated apple cutin as substrate, the two cutinases showed similar substrate concentration dependence, protein concentration dependence, time course profiles, and pH dependence profiles with optimum near 10.0. Using unlabeled cutin, the rate of dihydroxyhexadecanoic acid release from apple fruit cutin by cutinase I was determined to be 4.4 mumol per min per mg. The cutinases hydrolyzed methyl hexadecanoate, cyclohexyl hexadecanoate, and to a much lesser extent hexadecyl hexadecanoate but not 9-hexadecanoyloxyheptadecane, cholesteryl hexadecanoate, or hexadecyl cinnamate. The extent of hydrolysis of these model substrates by cutinase I was at least three times that by cutinase II. The nonspecific esterase hydrolyzed all of the above esters except hexadecyl cinnamate, and did so to a much greater extent than did the cutinases. None of the enzymes hydrolyzed alpha- or beta-glucosides of p-nitrophenol. p-Nitrophenyl esters of fatty acids from C2 through C18 were used as substrates and V's and Kms were determined...
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