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At least 19 recordsLinked to original sources

Recognition of chest radiograph orientation for picture archiving and communications systems display using neural networks.

A neural network classification scheme was developed that enables a picture archiving and communications system workstation to determine the correct orientation of posteroanterior or anteroposterior chest images. This technique permits thoracic images to be displayed conventionally when called up on the workstation, and therefore reduces the need for reorientation of the image by the observer. Feature data were extracted from 1,000 digitized chest radiographs and used to train a two-layer neural network designed to classify the image into one of the eight possible orientations for a posteroanterior chest image. Once trained, the neural network identified the correct image orientation in 888 of 1,000 images that had not previously been seen by the neural network. Of the 112 images that were incorrectly classified, 106 were mirror images of the correct orientation, whereas only 6 actually had the caudal-cranial axis aligned incorrectly. The causes for misalignment are discussed.

Humans

Markovian neural networks.

The neural network that efficiently and nearly optimally solves difficult optimization problems is defined. The convergence proof for the Markovian neural network that asynchronously updates its neurons' states is also presented. The comparison of the performance of the Markovian neural network with various combinatorial optimization methods in two domains is described. The Markovian neural network is shown to be an efficient tool for solving optimization problems.

Cybernetics

3-D components of a biological neural network visualized in computer generated imagery. II. Macular neural network organization.

Computer-assisted reconstructions of small parts of the macular neural network show how the nerve terminals and receptive fields are organized in 3-dimensional space. This biological neural network is anatomically organized for parallel distributed processing of information. Processing appears to be more complex than in computer-based neural networks, because spatiotemporal factors figure into synaptic weighting. Serial reconstruction data show anatomical arrangements which suggest that 1) assemblies of cells analyse and distribute information with inbuilt redundancy, to improve reliability; 2) feedforward/feedback loops provide the capacity for presynaptic modulation of output during processing; 3) constrained randomness in connectivities contributes to adaptability; and 4) local variations in network complexity permit differing analyses of incoming signals to take place simultaneously. The last inference suggests that there may be segregation of information flow to central stations subserving particular functions.

Acoustic Maculae

A demonstration that breast cancer recurrence can be predicted by neural network analysis.

Neural Network Analysis, a form of artificial intelligence, was successfully used to predict the clinical outcome of node-positive breast cancer patients. A Neural Network was trained to predict clinical outcome using prognostic information from 1008 patients. During training, the network received as input information tumor hormone receptor status, DNA index and S-phase determination by flow cytometry, tumor size, number of axillary lymph nodes involved with tumor, and age of the patient, as well as length of clinical followup, relapse status, and time of relapse. The ability of the trained Network to determine relapse probability was then validated in a separate set of 960 patients. The Neural Network was as powerful as Cox Regression Modeling in identifying breast cancer patients at high and low risk for relapse.

Axilla

Computerized detection of clustered microcalcifications in digital mammograms: applications of artificial neural networks.

Artificial neural networks have been applied to the differentiation of actual "true" clusters from normal parenchymal patterns and also to the differentiation of actual clusters from false-positive clusters as reported by a computerized scheme for the detection of microcalcifications in digital mammograms. The differentiation was carried out in both the spatial and frequency domains. The performance of the neural networks was evaluated quantitatively by means of receiver operating characteristic (ROC) analysis. It was found that the networks could distinguish clustered microcalcifications from normal nonclustered areas in the frequency domain, and that they could eliminate approximately 50% of false-positive clusters of microcalcifications while preserving 95% of the positive clusters, when applied to the results of the automated detection scheme. A large, comprehensive training database is needed for neural networks to perform reliably in clinical situations.

Breast Diseases

Improvements in protein secondary structure prediction by an enhanced neural network.

Computational neural networks have recently been used to predict the mapping between protein sequence and secondary structure. They have proven adequate for determining the first-order dependence between these two sets, but have, until now, been unable to garner higher-order information that helps determine secondary structure. By adding neural network units that detect periodicities in the input sequence, we have modestly increased the secondary structure prediction accuracy. The use of tertiary structural class causes a marked increase in accuracy. The best case prediction was 79% for the class of all-alpha proteins. A scheme for employing neural networks to validate and refine structural hypotheses is proposed. The operational difficulties of applying a learning algorithm to a dataset where sequence heterogeneity is under-represented and where local and global effects are inadequately partitioned are discussed.

Artificial Intelligence

A neural network model of neural activity in the monkey globus pallidus.

A 3-layer neural network model was constructed to determine the discharge patterns of neurons within the globus pallidus (GP) which would be required to run a sequence of movements at the motor cortical level. The model was based on the presence of tonic and phasic neuronal activity within the motor cortical region; that positive feedback was required to maintain tonic neuronal activity and that phasic neuronal activity was required to initiate and terminate the tonic neuronal activity. The model predicted the presence of both phasic and tonic activity within the middle layer (layer 2; GP) of the model in order for the motor cortical regions (layers 1 and 3) to be able to run and to maintain the movement sequence. This prediction was in keeping with our electrophysiological findings within GP.

Animals

Novel method for the display of multivariate data using neural networks.

A neural network has been used to reduce the dimensionality of multivariate data sets to produce two-dimensional (2D) displays of these sets. The data consisted of physicochemical properties for sets of biologically active molecules calculated by computational chemistry methods. Previous work has demonstrated that these data contain sufficient relevant information to classify the compounds according to their biological activity. The plots produced by the neural network are compared with results from two other techniques for linear and nonlinear dimension reduction, and are shown to give comparable and, in one case, superior results. Advantages of this technique are discussed.

Antimycin A

Computer recognition of brain stem auditory evoked potential wave V by a neural network.

A neural network simulator was used to create a connectionist model for the recognition of the peak of wave V of the brain stem auditory evoked potential (BAEP) test. Wave forms were selected from BAEPs performed in the last four years at the University of Pittsburgh Presbyterian University Hospital (PUH). The ipsilateral and contralateral wave forms were digitized and then sampled at 0.1 msec intervals using linear interpolation. The resulting amplitudes were normalized to the range less than -1, 1 greater than. The normalized amplitudes were used as the initial activation values for the processing elements of the input layer. The desired outputs (the target locations for wave V) were determined by adjusting the latencies recorded by the physician interpreter for any distortion in the digitizing process. The location of wave V was represented in the output layer by setting the output element which correspond to the target location and its immediate neighbors to high activation levels and all the remaining output units to zero activity. Two network architectures, differing only in the hidden unit layer, with 40 and 16 hidden units respectively, were used. The networks were trained using standard back-propagation. Several trials from different starting points were performed for each architecture. The training set was composed of the wave forms resulting from the stimulation of 50 ears. The best network, found after 60 epochs (3000 presentations) was able to correctly identify 17 out of 20 cases (85%) from a set of test cases which were independent from the training set.

Diagnosis, Computer-Assisted

Computer recognition of brain stem auditory evoked potential wave V by a neural network.

A neural network simulator was used for the recognition of the presence and location of the peak of wave V of the brain stem auditory evoked potential (BAEP) test. Waveforms selected from BAEPs performed in the last 4 years at the University of Pittsburgh Presbyterian University Hospital were digitized and sampled, and the resulting amplitudes were normalized. A training set was composed of the waveforms resulting from the stimulation of 50 ears. The normalized amplitudes were used as the initial activation values for the networks. The desired outputs (the target locations for wave V) were represented in the output layer by setting the output element, which corresponded to the target location and its immediate neighbors, to high activation levels, and all the remaining output units to zero activity. Two network architectures, differing only in the hidden unit layer, with 40 and 16 hidden units, respectively, were trained by using standard back-propagation. Several trials from different starting points were performed for each architecture. The best network, found after 60 epochs (3,000 presentations), was able to correctly identify 17 of 20 cases (85%) from a set of test cases that were independent from the training set.

Evaluation Studies as Topic

Efficient recognition of immunoglobulin domains from amino acid sequences using a neural network.

A neural network was trained using back propagation to recognize immunoglobulin domains from amino acid sequences. The program was designed to identify proteins exhibiting such domains with minimal rates of false positives and false negatives. The National Biomedical Research Foundation NEW protein sequences database was scanned to evaluate the performance of the program in recognizing mouse immunoglobulin sequences. The program correctly recognized 55 out of 56 mouse immunoglobulin sequences, corresponding to a recognition efficiency of 98.2% with an overall false positive rate of 7.3%. These data demonstrate that neural network-based search programs are well suited to search for sequences characterized by only a few well-conserved subsequences.

Algorithms

A movement pattern generator model using artificial neural networks.

Artificial neural networks (ANN's) allow a new approach to biological modeling. The main applications of ANN's have been geared towards the modeling of the association and learning mechanisms of the brain; only a few researchers have explored them for motor control. The fact that ANN's are based on biological systems indicates their potential application for a biological act such as locomotion. Towards this goal, we have developed a "movement pattern generator," using an ANN for generating periodic movement trajectories. This model is based on the concept of "central pattern generators." Jordan's sequential network, which is capable of learning sequences of patterns, was modified and used to generate several bipedal trajectories (or gaits), coded in task space, at different frequencies. The network model successfully learned all of the trajectories presented to it. The model has many attractive properties such as limit cycle behavior, generalization of trajectories and frequencies, phase maintenance, and fault tolerance. The movement pattern generator model is potentially applicable for improved understanding of animal locomotion and for use in legged robots and rehabilitation medicine.

Animals

X-ray spectral reconstruction from attenuation data using neural networks.

An artificial neural network using input data derived from attenuation measurements was trained to generate spectral profiles (relative number of photons versus energy). Once the relative spectral distribution is reconstructed, absolute spectra (number of photons per unit exposure spectral distribution is reconstructed, absolute spectra (number of photons per unit exposure versus energy) can be calculated. A neural network was trained on spectra generated mathematically using the Birch-Marshall model, combined with attenuation data, calculated from the spectra by numerical integration. Whereas attenuation data can be calculated in a straightforward manner from the x-ray spectra, the reverse is not true. Several neural networks were successfully taught to reconstruct the spectra, given the attenuation data. The networks were tested using kV/inherent filtration combinations that were not in the training set, and the performance of the reconstruction was excellent. Noise in the attenuation data was simulated to test the effects of noise propagation in the reconstruction. The effects of network architecture and data averaging on noise propagation were investigated. Experimentally determined spectral data complied by Fewell were also used to train a neural network, and the results of the reconstruction were also found to be excellent.

Artificial Intelligence

Self-organization of day cycle and hierarchical associative memory in "live" neural network.

The "live" neural network model is proposed on the basis of "live" neuron model and optimal learning rule. By means of numerical simulation the initial stages of neural network self-organization have been shown: (1) the formation of two activity forms, which are identified with sleep and awaking, and (2) the self-organization of hierarchical associative memory when feeding a receptor excitation to the neural network. The energetic profit of self-organization is demonstrated. The formation of neural ensembles, playing the role of generalized neurons, is obtained.

Biological Clocks

Influence of noise on the function of a "physiological" neural network.

A model neural network with stochastic elements in its millisecond dynamics is investigated. The network consists of neuronal units which are modelled in close analogy to physiological neurons. Dynamical variables of the network are the cellular potentials, axonic currents and synaptic efficacies. The dynamics of the synapses obeys a modified Hebbian rule and, as proposed by v. d. Malsburg (1981, 1985), develop on a time scale of a tenth of a second. In a previous publication (Buhmann and Schulten 1986) we have confirmed that the resulting noiseless auto-associative network is capable of the well-known computational tasks of formal associative networks (Cooper 1973; Kohonen et al. 1984, 1981; Hopfield 1982). In the present paper we demonstrate that random fluctuations of the membrane potential improve the performance of the network. In comparison to a deterministic network a noisy neural network can learn at lower input frequencies and with lower average neural firing rates. The electrical activity of a noisy network is very reminiscent of that observed by physiological recordings. We demonstrate furthermore that associative storage reduces the effective dimension of the phase space in which the electrical activity of the network develops.

Animals

Molecular networks as a sub-neural factor of neural networks.

We describe a new approach in the research of neural networks. This research is based on molecular networks in the neuron. If we use molecular networks as a sub-neuron factor of neural networks, it is a more realistic approach than today's concepts in this new computer technology field, because the artificial neural activity profile is similar to the profile of the action potential in the natural neuron. The molecular networks approach can be used in three technologies: neurocomputer, neurochip and molecular chip. This means that molecular networks open new fields of science and engineering called molecular-like machines and molecular machines.

Cytoskeleton

An improved neural-network model for the neural integrator of the oculomotor system: more realistic neuron behavior.

The discharge rates of premotor, brain-stem neurons that create eye movements modulate in relation to eye velocity yet firing rates of extraocular motoneurons contain both eye-position and eye-velocity signals. The eye-position signal is derived from the eye-velocity command by means of a neural network which functions as a temporal integrator. We have previously proposed a network of lateral-inhibitory neurons that is capable of performing the required integration. That analysis centered on the temporal aspects of the signal processing for a limited class of idealized inputs. All of its cells were identical and carried only the integrated signal. Recordings in the brain stem, however, show that neurons in the region of the neural integrator have a variety of background firing rates, all carry some eye-velocity signal as well as the eye-position signal, and carry the former with different strengths depending on the type of eye movement being made. It was necessary to see if the proposed model could be modified to make its neurons more realistic. By modifying the spatial distribution of afferents to the network, we demonstrate that the same basic model functions properly in spite of afferents with nonuniform background firing rates. To introduce the eye-velocity signal a double-layer network, consisting of inhibitory and excitatory cells, was necessary. By presenting the velocity input to only local regions of this network it was shown that all cells in the network still carried the integrated signal and that its cells could carry different eye-velocity signals for different types of eye movements. Thus, this model stimulates quantitatively and qualitatively, the behavior of neurons seen in the region of the neural integrator.

Brain Stem