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At least 19 recordsLinked to original sources

Denitrification of drinking water by a combined process of heterotrophication and electrochemical autotrophication.

A combined two-step process of heterotrophic and electrochemical autotrophic denitrification was developed for the treatment of nitrate-contained drinking water. The water was first treated with heterotrophic biological denitrification and was further purified with electrochemical autotrophic denitrification. The two steps were carried out in a heterotrophication-electrochemical autotrophication combined reactor (HEAR). The lower section performed as the heterotrophic biological reactor and the upper section acted as the electrochemical autotrophic reactor. The bioreactor was a packed bed of anthracite particles, and the water flow was directed in an upward continuous mode. The total nitrate and nitrite concentration, and residual methanol in the effluent were monitored to evaluate the performance of the reactor. The reactor was operated for one year with a feed concentration of 40 mg NO3(-)-N/l. There was no nitrite or residual methanol accumulation in the effluent when the feed C:N ratios (m/m) varied from 2.2 to 2.9. However, slightly excessive methanol dosage could increase the denitrifying capacity of the reactor. The maximum denitrification load of the reactor at 24 degrees C was 10.68 g NO3-/m3 h (47 g NO3-) at C:N = 2.5.

Bioreactors↗

Heterotrophic nitrification in an Acid forest soil and by an Acid-tolerant fungus.

Nitrate was formed from ammonium at pH 3.2 to 6.1 in suspensions of a naturally acid forest soil; the maximum rates of formation occurred at ca. pH 4 to 5. Nitrate was also formed from soil nitrogen in suspensions incubated at 50 degrees C. Autotrophic nitrifying bacteria could not be isolated from this soil. Enrichment cultures produced nitrate in a medium with beta-alanine if much soil was added to the medium, and nitrite but not nitrate was formed in the presence of small amounts of soil. Nitrification by these enrichments was abolished by eucaryotic but not procaryotic inhibitors. A strain of Absidia cylindrospora isolated from this soil was found to produce nitrate and nitrite in a medium with beta-alanine at pH values ranging from 4.0 to 4.8. Nitrate production by A. cylindrospora required the presence of sterile soil. Free and bound hydroxylamine, hydroxamic acids, and primary aliphatic nitro compounds did not accumulate during the conversion of beta-alanine to nitrite by the fungus. The organism also formed nitrite from ammonium in a medium containing acetate. We suggest that nitrification in this soil is a heterotrophic process catalyzed by acid-tolerant fungi and not by autotrophs or heterotrophs in nonacid microsites.

Journal Article↗

Nitroaromatic munition compounds: environmental effects and screening values.

Available data on the occurrence, transport, transformation, and toxicity of eight nitroaromatic munition compounds and their degradation products, TNT, TNB, DNB, DNA, 2-ADNT, RDX, HMX, and tetryl were used to identify potential fate in the environment and to calculate screening benchmarks or safe environmental levels for aquatic and terrestrial organisms. Results of monitoring studies revealed that some of these compounds persist at sites where they were produced or processed. Most of the compounds are present in soil, sediment, and surface water or groundwater at military sites. Soil adsorption coefficients indicate that these chemicals are only moderately adsorbed to soil and may leach to groundwater. Most of these compounds are transformed by abiotic or biotic mechanisms in environmental media. Primary transformation mechanisms involve photolysis (TNT, RDX, HMX, tetryl), hydrolysis (tetryl), and microbial degradation (TNT, TNB, DNB, DNA, 2-ADNT, and HMX). Microbial degradation for both nitro and nitramine aromatic compounds involves rapid reduction of nitro groups to amino groups, but further metabolism is slow. With the exception of DNB, complete mineralization did not usually occur under the conditions of the studies. RDX was resistant to microbial degradation. Available ecotoxicological data on acute and chronic studies with freshwater fish and invertebrates were summarized, and water quality criteria or ecotoxicological screening benchmarks were developed. Depending on the available data, criteria/benchmarks were calculated according to USEPA Tier I or Tier II guidelines. The munitions chemicals are moderately to highly toxic to freshwater organisms, with chronic screening values < 1 mg/L. For some chemicals, these low values are caused by inherent toxicity; in other cases, they result from the conservative methods used in the absence of data. For nonionic organic munitions chemicals, sediment quality benchmarks were calculated (based on Kow values and the final chronic value) according to USEPA guidelines. Available data indicate that none of the compounds is expected to bioconcentrate. In the same manner in which reference doses for humans are based on studies with laboratory animals, reference doses or screening benchmarks for wildlife may also be calculated by extrapolation among mammalian species. Chronic NOAELs for the compounds of interest were determined from available laboratory studies. Endpoints selected for wildlife species were those that diminish population growth or survival. Equivalent NOAELs for wildlife were calculated by scaling the test data on the basis of differences in body weight. Data on food and water intake for seven selected wildlife species--short-tailed shrew, white-footed mouse, meadow vole, cottontail rabbit, mink, red fox, and whitetail deer--were used to calculate NOAELs for oral intake. In the case of TNB, a comparison of toxicity data from studies conducted with both the white-footed mouse and the laboratory rat indicates that the white-footed mouse may be more resistant to the toxic effects of chemicals than the laboratory rat and may further indicate the lesser sensitivity of wildlife species to chemical insult. Chronic NOAEL values for the test species based on the laboratory studies indicate that, by the oral route of exposure, TNB and RDX are not highly toxic to mammalian species. However, as seen with TNB, values are less conservative when chronic studies are available or when studies were conducted with wildlife species. Insufficient data were located to calculate NOAELs for avian species. In the absence of criteria or guidelines for terrestrial plants, invertebrates, and soil heterotrophic processes, LOECs were used as screening benchmarks for effect levels in the environment. In most cases, too few data were available to derive a screening benchmark or to have a high degree of confidence in the benchmarks that were derived. (ABSTRACT TRUNCATED)

Animals↗

Metabolic stoichiometry and the fate of excess carbon and nutrients in consumers.

Animals encountering nutritionally imbalanced foods should release elements in excess of requirements in order to maintain overall homeostasis. Quantifying these excesses and predicting their fate is, however, problematic. A new model of the stoichiometry of consumers is formulated that incorporates the separate terms in the metabolic budget, namely, assimilation of ingested substrates and associated costs, protein turnover, other basal costs, such as osmoregulation, and the use of remaining substrates for production. The model indicates that release of excess C and nonlimiting nutrients may often be a significant fraction of the total metabolic budget of animals consuming the nutrient-deficient forages that are common in terrestrial and aquatic systems. The cost of maintenance, in terms of not just C but also N and P, is considerable, such that food quality is important even when intake is low. Many generalist consumers experience short-term and unpredictable fluctuations in their diets. Comparison of model output with data for one such consumer, Daphnia, indicates that mechanisms operating postabsorption in the gut are likely the primary means of regulating excess C, N, and P in these organisms, notably respiration decoupled from biochemical or mechanical work and excretion of carbon and nutrients. This stoichiometrically regulated release may often be in organic rather than inorganic form, with important consequences for the balance of autotrophic and heterotrophic processes in ecosystems.

Animals↗

Diversity and dynamics of a north atlantic coastal Vibrio community.

Vibrios are ubiquitous marine bacteria that have long served as models for heterotrophic processes and have received renewed attention because of the discovery of increasing numbers of facultatively pathogenic strains. Because the occurrence of specific vibrios has frequently been linked to the temperature, salinity, and nutrient status of water, we hypothesized that seasonal changes in coastal water bodies lead to distinct vibrio communities and sought to characterize their level of differentiation. A novel technique was used to quantify shifts in 16S rRNA gene abundance in samples from Barnegat Bay, N.J., collected over a 15-month period. Quantitative PCR (QPCR) with primers specific for the genus Vibrio was combined with separation and quantification of amplicons by constant denaturant capillary electrophoresis (CDCE). Vibrio populations identified by QPCR-CDCE varied between summer and winter samples, suggesting distinct warm-water and year-round populations. Identification of the CDCE populations by cloning and sequencing of 16S rRNA genes from two summer and two winter samples confirmed this distinction. It further showed that CDCE populations corresponded in most cases to approximately 98% rRNA similarity groups and suggested that the abundance of these follows temperature trends. Phylogenetic comparison yielded closely related cultured and often pathogenic representatives for most sequences, and the temperature ranges of these isolates confirmed the trends seen in the environmental samples. Overall, this suggests that temperature is a good predictor of the occurrence of closely related vibrios but that considerable microdiversity of unknown significance coexists within this trend.

Atlantic Ocean↗

[Water pollution, self-purification and restoration possibilities].

Organic pollution is still the most important anthropogenic stress factor influencing the usability of ground and surface water as drinking water for cattle. Organic pollution is decomposed in several distinct heterotrophic processes that cause oxygen deficit, and finally end in the production of ammonia, hydrogen sulphide or methane. Even after the oxygen balance being restored higher nutrient concentrations (eutrophication) will remain. Eutrophication itself often leads to secondary pollution processes that adversely affect oxygen availability. Toxins may be generated by certain bluegreen bacteria growing under highly eutrophic conditions. Due to the concentrations of organic substances bacterial growth is forced, sometimes including faecal indicators and pathogenic species originating from the effluents of most of the communal sewage treatment works. Another kind of man made pollution concerns certain toxic substances. Disregarding the effects of accidental spills, the industrial production and use of pesticides in agriculture as well as other industrial chemicals or heavy metals may cause concentrations beyond acceptable limits. The use of surface water for cattle may become a problem for this reason. Accidental spills must be reckoned with as well, so the technical equipment for providing alternative sources of drinking water in emergencies must be available. Whereas the use of groundwater is normally not affected by toxic substance or pathogenic bacteria, high concentrations of iron, humic acids or salination may affect the suitability of water for cattle.

Animal Husbandry↗

Essential interactions between Thiobacillus ferrooxidans and heterotrophic microorganisms during a wastewater sludge bioleaching process.

The stimulating effect of heterotrophic microorganisms was investigated on the growth and on the ferrous iron oxidation of Thiobacillus ferrooxidans in synthetic media and in wastewater sludge. The addition of a sediment. Rhodotorula rubra isolate or a strain of T. acidophilus on two-layer agarose-gelled medium doubled the plating efficiency of T. ferrooxidans. In liquid cultures, R. rubra had a slight but significant effect on the growth rate of T. ferrooxidans. Moreover, the yeast allowed a faster initiation of the ferrous iron oxidation and acidification by T. ferrooxidans. In the bioleaching process, the co-culture of T. ferrooxidans with R. rubra or with the indigenous microbial assemblage from sludge was shown to be essential since the pure culture of T. ferrooxidans failed to oxidize ferrous iron and to acidify wastewater sludge. These results emphasize the importance of active heterotrophic microorganisms in the metal bioleaching activity of T. ferrooxidans in sludge.

Journal Article↗

The Influence of Preculture Conditions and Food Quality on the Ingestion and Digestion Process of Three Species of Heterotrophic Nanoflagellates.

The influence of prey characteristics such as motility and size as well as of predator characteristics such as satiation and preculturing diet on the feeding process of interception feeding heterotrophic nanoflagellates was investigated. Three species of gram-negative bacteria, one species of gram-positive bacteria, two species of cyanobacteria (Synechococcus) and inert latex particles were fed as prey particles for three species of heterotrophic nanoflagellates (Spumella, Ochromonas, Cafeteria). Ingestion rates depended on the satiation of the flagellates and especially on the filling status of the food vacuoles. In addition, the ingestion rates depended on the characteristics of the food particle and were modified by pre-culturing the flagellates on either Pseudomonas putida or Bacillus subtilis. Digestion was found to be particle-specific. Cyanobacteria were excreted a few minutes after ingestion whereas heterotrophic bacteria were stored and digested in the food vacuoles. The spectrum of ingested particles is not identical to that of digested particles and thus neither the diet of the flagellates nor their impact on bacterial communities can be calculated simply from food vacuole content. "Selective digestion" could be shown to be an important selection mechanism concerning natural food particles. The digestion strategies of Cafeteria on the one hand and Spumella and Ochromonas on the other hand may be an important factor to explain protozoan species composition and succession in the field. In addition to bacterial abundance and grazing pressure by metazooplankton, the bacterial speciescomposition as well as biochemical variations within bacterial species may influence protozoan species composition and abundance.

Journal Article↗

Biofilm morphology and nitrification activities: recovery of nitrifying biofilm particles covered with heterotrophic outgrowth.

Biofilm processes are commonly used for nitrification. Operationally, a whitish heterotrophic biofilm layer tends to develop onto nitrifying biofilm when it has been exposed to organic carbon-containing wastewater for a prolonged period. The development of a heterotrophic biofilm layer could lead to deterioration in nitrification activities and biofilm morphology. The recovery characteristics, in terms of biofilm morphology and nitrification activities, of deteriorated biofilm particles (i.e. nitrifying biofilm particles covered with heterotrophic outgrowth) were investigated by transferring the deteriorated biofilm particles (from an Ultra-Compact Biofilm Reactor (UCBR) which was part of a packed bed-UCBR system used for treating organic carbon and ammonia-containing wastewater) to a UCBR fed solely with ammonia wastewater (referred to as 'Recovery-UCBR'). At a hydraulic retention time (HRT) of 8.7 h and a sand-carrier concentration of 4.0% (v/v), density of the outer heterotrophic biofilm layer reduced progressively which led to subsequent detachment of this layer from the nitrifying biofilm particles. As a result, morphology of the nitrifying biofilm improved gradually in the Recovery-UCBR. A stable nitrification rate of up to 1.74 kg NH4+-N/m3 d was obtained in the Recovery-UCBR.

Ammonia↗

Oxygen-tolerant strain of chlorella sorokiniana.

An oxygen-tolerant strain (OTS) of Chlorella sorokiniana was isolated by growing and continuously subculturing the oxygen-sensitive strain (OSS) in growth medium bubbled continuously with 95% O(2)-5% CO(2). Under these conditions, 6 to 8 hr were required before the OSS began to grow. The growth rates of the OTS and the OSS were the same when grown in an atmosphere of air-5% CO(2), and the growth rate of the OTS was the same when aerated with 95% O(2)-5% CO(2) and air-5% CO(2). The adaptive process was irreversible since serial transfers of the OTS grown with air-5% CO(2) did not alter the ability of the OTS to grow with 95% O(2)-5% CO(2). Inasmuch as photosynthesis in the OTS and the OSS was inhibited to a similar extent by oxygen and the adaptive process occurred heterotrophically in the absence of photosynthesis, it was concluded that the adaptive process was independent of photosynthesis. Morphological differences between the OTS and the OSS are presented and discussed with respect to the adaptive process.

Adaptation, Biological↗

Identification of genetic determinants that promote biofilm growth under heterotrophic conditions in Cupriavidus necator using transposon enrichment.

Cupriavidus necator is a metabolically versatile &#x3b2;-proteobacterium of growing interest for auto- and heterotrophic bioprocesses, yet the genetic determinants governing its biofilm formation remain largely uncharacterized, particularly under process-relevant heterotrophic conditions. Here, we applied a forward-genetics transposon-enrichment approach to identify loci which promote surface-associated growth. A high-density mini-Tn5 mutant library (26,185 insertion clones, exceeding the >17,000 required for genome-wide coverage) was cultivated as a biofilm in a microfluidic flow-cell system on fructose for 168&#x202f;h, and the surface-associated community was characterized by deep sequencing. Twelve genes showed significantly elevated insertion frequencies, several with documented links to biofilm formation in other bacteria, including the ferrous-iron uptake system (feoA/feoB), galU, and a GSDEF/EAL dual-domain protein. The gene B2043 (E6A55_RS29530), encoding this c-di-GMP-metabolizing protein, was selected for validation by markerless deletion. Under static conditions, the &#x394;B2043 mutant showed a 1.69&#x202f;&#xb1;&#x202f;0.06-fold increase in biofilm-associated biomass (p&#x202f;=&#x202f;5.16&#x202f;&#xd7;&#x202f;10-15). Under flow-through conditions, the mutant attached faster, entered exponential growth &#x223c;10&#x202f;h earlier, reached its biovolume plateau &#x223c;16&#x202f;h earlier than the wild-type, and formed distinct tower-like structures. These results identify B2043 as a negative regulator of biofilm formation acting predominantly during attachment, provide the first experimental evidence for c-di-GMP-dependent biofilm regulation in C. necator H16, and establish a functional-genomics framework - together with eleven further candidate loci - for engineering productive biofilms in this organism.

Biofilm formation↗

Microbial diversity in natural environments: focusing on fundamental questions.

Interactions with Gijs Kuenen and other Dutch scientists have led my lab to fundamental insights into the composition, structure and function of a hot spring cyanobacterial mat community that should influence our thinking about all microbial communities. By focusing on the distribution of molecular sequence variants of predominant mat phototrophs, we have discovered that small-scale sequence variation can be ecologically meaningful. By applying novel cultivation approaches, we have been able to obtain genetically relevant community members and thus to test the hypothesis that closely related sequence variants arose via adaptive evolutionary radiation. By applying the analytical tools of organic geochemistry we have gained insight into the metabolisms of major phototrophic members of the mat community as well as interactions between phototrophic guilds. These observations challenge traditional paradigms about prokaryotic species and cause us to consider evolutionary ecology theory as we develop genome-based methods for high-resolution analysis of the species-like fundamental units comprising microbial communities, and for investigating how such units coordinate the physiological activities within guilds of the community.

Autotrophic Processes↗

A new process for enriching nitrifiers in activated sludge through separate heterotrophic wasting from biofilm carriers.

A new process, the biofilm-activated sludge innovative nitrification (BASIN) process, consisting of a moving-bed biofilm reactor (MBBR) with separate heterotrophic wasting, followed by an activated-sludge process, has been proposed to reduce the volumetric requirements of the activated-sludge process for nitrification. The basic principle is to remove chemical oxygen demand on the biofilm carriers by heterotrophic organisms and then to waste a portion of the heterotrophic biomass before it can be released into the activated-sludge reactor. By this means, the amount of heterotrophic organisms grown in the activated-sludge reactor is reduced, thereby reducing the volume of that tank needed for nitrification. For nitrification applications, the simplest method for stripping biomass was to use an in-tank technique using high shearing rates with aeration. Bench-scale testing showed sludge yields in the BASIN process were one-half of that in a control activated-sludge process and twice that of a process line with intermediate settling between the MBBR and activated-sludge stage. Critical washout solids retention times for nitrifiers were the same for all three lines, so activated-sludge volumes for the BASIN process could be reduced by 50% compared with the control. Originally conceived process concepts for the BASIN process were confirmed by the experimental work.

Algorithms↗

Gas analysis reveals novel aerobic deammonification in thermophilic aerobic digestion.

A laboratory-scale thermophilic aerobic digester was operated with piggery wastewater. The operating temperature varied from 50-70 degrees C. It has been found that excessive nitrogen removal occurred in the laboratory-scale thermophilic system at various HRTs. Nitrite and nitrate were not observed in the effluent. Gas measurement reveals the presence of significant amount of N2O along with NH3 gas. The rational production of N2O gas in accordance with temperature and HRT suggests that biologically mediated deammonification processes significantly contribute to the N removal. Although further microbiological investigation is required to clarify the exact nitrogen removal mechanism, the large production of N2O gas seems to be a result of the existence of a rapid growing heterotrophic deammonification process in the thermophilic system.

Agriculture↗

Microbial community dynamics during assays of harbour oil spill bioremediation: a microscale simulation study.

AIMS: Microcosm experiments simulating an oil spill event were performed to evaluate the response of the natural microbial community structure of Messina harbour seawater following the accidental load of petroleum. METHODS AND RESULTS: An experimental harbour seawater microcosm, supplemented with nutrients and crude oil, was monitored above 15 days in comparison with unpolluted ones (control microcosms). Bacterial cells were counted with a Live/Dead BacLight viability kit; leucine aminopeptidase, beta-glucosidase, alkaline phosphatase, lipase and esterase enzymes were measured using fluorogenic substrates. The microbial community dynamic was monitored by isolation of total RNA, RT-PCR amplification of 16S rRNA, cloning and sequencing. Oil addition stimulated an increase of the total bacterial abundance, leucine aminopeptidase and phosphatase activity rates, as well as a change in the community structure. This suggested a prompt response of micro-organisms to the load of petroleum hydrocarbons. CONCLUSIONS: The present study on the viability, specific composition and metabolic characteristics of the microbial community allows a more precise assessment of oil pollution. Both structural and functional parameters offer interesting perspectives as indicators to monitor changes caused by petroleum hydrocarbons. SIGNIFICANCE AND IMPACT OF THE STUDY: A better knowledge of microbial structural successions at oil-polluted sites is essential for environmental bioremediation. Data obtained in microcosm studies improve our understanding of natural processes occurring during oil spills.

Alcanivoraceae↗