Search PubMed⌕ Search

SEARCH · Search PubMed

Results for “Caves”

Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 19 recordsLinked to original sources

Hominid exploitation of the environment and cave bear populations. The case of Ursus spelaeus Rosenmüller-Heinroth in Amutxate cave (Aralar, Navarra-Spain).

Cave bears (Ursus deningeri and U. spelaeus) and hominids (Homo heidelbergensis, H. neanderthalensis, and H. sapiens) were potential competitors for environmental resources (subterranean and open air). Here, we examined the age at death of cave bear (Ursus spelaeus Rosenmüller-Heinroth) specimens from Amutxate cave in order to shed light on the effect of resource sharing between cave bears and hominids. After studying dental wear of the deciduous and permanent dentitions, the ontogenetic development of mandibles, and incremental layers of cement (annuli), we defined five age groups differentiated by marked development and size gaps. Our findings indicate that after hibernating, bears abandoned the den, thereby leaving the subterranean environment (caves) free for temporary hominid occupation-this would explain the subtle traces of hominid presence in many dens. However, a simple calculation based on age at death of subadult and adult cave bear specimens in Amutxate cave, extrapolated to the whole cave area, showed that the area surrounding this cave hosted bears for at least 9,000 years. This length of habitation, quite similar to the time-span derived from amino acid racemization and electron spin resonance, indicates that bear populations in the Amutxate cave constituted a serious constraint for hominid exploitation of the environment.

Animals↗

Anthropogenic CO2-flux into cave atmosphere and its environmental impact: A case study in the Císarská Cave (Moravian Karst, Czech Republic).

The evolution of CO2 levels was studied in the ventilated and unventilated Nagel Dome chamber (the Císarská Cave) with- and without human presence. Based on a simplified dynamic model and CO2/Rn data (222Rn considered as a conservative tracer), two types of CO2-fluxes into the chamber were distinguished: (1) the natural input of (2-4) x 10(-6) m3 s(-1), corresponding to a flux of (8.5-17) x 10(-10) m3 m(-2) s(-1) and (2) an anthropogenic input of (0.6-2.5) x 10(-4) m3 s(-1), corresponding to an average partial flux of (4.8-7.7) x 10(-6) m3 s(-1) person(-1). The chamber ventilation rates were calculated in the range from 0.033 to 0.155 h(-1). Comparison of the chamber CO2-levels with chamber dripwater chemistry indicates that the peak CO2-concentrations during stay of persons (log p(CO2) approximately -2.97, -2.89, and -2.83) do not reach the theoretical values at which dripwater carbonate species and air CO2 are at equilibrium (log p(CO2[DW]) approximately -2.76 to -2.79). This means that CO2-degassing of the dripwaters will continue, increasing supersaturation with respect to calcite (dripwater saturation index defined as SI(calcite) = a(Ca2+)a(CO3(2-))/10(-8.4) varied in the range from 0.76 to 0.86). The p(CO2[DW]) values, however, would easily be exceeded if the period of person stay in the chamber had been slightly extended (from 2.85 to 4 h under given conditions). In such case, the dripwater CO2-degassing would be inverted into CO2-dissolution and dripwater supersaturation would decrease. Achieving the threshold values at which water become aggressive to calcite (log p(CO2[EK]) approximately -1.99, -2.02, and -1.84) would require extreme conditions, e.g., simultaneous presence of 100 persons in the cave chamber for 14 h. The study should contribute to a better preservation of cave environment.

Air Pollutants, Radioactive↗

International comparison of cave radon concentrations identifying the potential alpha radiation risks to British cave users.

Elevated concentrations of 222Rn have been recorded in many limestone caves throughout the world. As prolonged exposure to high radon concentrations has been linked to cancer and tumors, particularly of the lung (National Academy of Science 1988; Eatough and Henshaw 1990), a national survey of radon in British caves was undertaken. Passive radon detectors were exposed at 250 sites in 47 caves over four 7-d sampling periods. Mean concentrations ranging from 454-8,868 Bq m-3 were recorded. In one system, in the Peak District, radon concentrations of 155,000 Bq m-3 were recorded. The results indicate that the potential radiation dose from a single 4-h trip could exceed the national average annual background radiation dose (for the UK) from radon of 1.25 mSv.

Air↗

Effects of haptic feedback and turbulence on landing performance using an immersive cave automatic virtual environment (CAVE).

An investigation was conducted in which subjects had to land a simulated F-16 aircraft using a CAVE (Cave Automatic Virtual Environment) facility. This was a three-dimensional virtual setting consisting of multiple mirrors, 3-D video-projected displays in a highly stressful environment employing a haptic joystick. 6 subjects learned a task which required landing in wind turbulence with a reduced visual scene. Analyses indicated that during landing, performance error variables which occurred in the same direction as the haptic forces were significantly reduced. This was true, especially when the visual scene was occluded and more reliance on the proprioceptive condition was beneficial.

Adult↗

A critique of the evidence for scavenging by Neanderthals and early modern humans: new data from Kobeh Cave (Zagros Mountains, Iran) and Die Kelders Cave 1 layer 10 (South Africa).

The primary mode of faunal exploitation by Neandertals and early modern humans remains a debated topic. Binford (1981, 1984, 1985, 1988) has argued for an obligate scavenging mode, Stiner (1991a, 1991b, 1991c, 1993, 1994) for a more opportunistic scavenging mode, while other researchers (Chase, 1986, 1988, 1989; Klein, 1989, 1994, 1995; Klein & Cruz-Uribe, 1996) deny the importance of scavenging as a faunal exploitation tactic. The scavenging interpretations rely primarily on several patterns in the faunal remains: the presence of a skeletal element pattern dominated by heads or head and foot parts, the presence of carnivore tooth marks on bone fragments, and infrequent cut marks that typically are not located on shaft regions of long bones or on fleshy bones. Five sites have been used to argue for scavenging: Klasies River Mouth, Combe Grenal, Grotta Guattari, Grotta dei Moscerini, and Grotte Vaufrey. The former four of the five sites are biased samples in that long bone shafts and other difficult to identify fragments were discarded at excavation. The analysis of Grotte Vaufrey included only those shafts identifiable to species or genus, thus excluding the vast majority of shaft specimens. This bias systematically shapes the skeletal element and surface modification patterning in ways that make the assemblages appear to fit a model of scavenging, when in fact the main determinant of the pattern is the bias in the flawed samples. This problem is illustrated with two unbiased faunal assemblages (Kobeh Cave and Die Kelders Layer 10). Skeletal element abundance is calculated in a way that mimics the bias in the sites listed above by excluding the shafts. Using this procedure, both Kobeh and Die Kelders have a head and foot skeletal element pattern and thus appear scavenged. Both assemblages are then analyzed in their entirety and a new pattern, consistent with hunting, is revealed. Taphonomic data on bone survival and destruction provide an explanation for this result. Excluding shaft fragments from the analysis also biases the surface modification patterning in such a way as to produce a pattern more consistent with scavenging. The conclusion is that there is no reliable evidence for scavenging by Neandertals or early modern humans.

Animals↗

Ancient climate changes and relaxed selection shape cave colonization in North American cavefishes.

Extreme environments serve as natural laboratories for studying evolutionary processes, with caves offering replicated instances of independent colonizations. The timing, mode and genetic underpinnings underlying cave-obligate organismal evolution remain enigmatic. We integrate phylogenomics, fossils, palaeoclimatic modelling and newly sequenced genomes to elucidate the evolutionary history and adaptive processes of cave colonization in the study group, the North American Amblyopsidae fishes. Amblyopsid fishes present a unique system for investigating cave evolution, encompassing surface, facultative cave-dwelling and cave-obligate (troglomorphic) species. Using 1105 exon markers and total-evidence dating, we reconstructed a robust phylogeny that supports the nested position of eyed, facultative cave-dwelling species within blind cavefishes. We identified three independent cave colonizations, dated to the Early Miocene (18.5 Ma), Late Miocene (10.0 Ma) and Pliocene (3.0 Ma). Evolutionary model testing supported a climate-relict hypothesis, suggesting that global cooling trends since the Early-Middle Eocene may have influenced cave colonization. Comparative genomic analyses of 487 candidate genes revealed both relaxed and intensified selection on troglomorphy-related loci. We found more loci under relaxed selection, supporting neutral mutation as a significant mechanism in cave-obligate evolution. Our findings provide empirical support for climate-driven cave colonization and offer insights into the complex interplay of selective pressures in extreme environments.

Animals↗

Evidence for reproductive isolation between cave bear populations.

The European cave bear (Ursus spelaeus), which became extinct around 15,000 years ago, had several morphologically different forms. Most conspicuous of these were small Alpine cave bears found at elevations of 1,600 to 2,800 m. Whereas some paleontologists have considered these bears a distinct form, or even a distinct species, others have disputed this. By a combination of morphological and genetic methods, we have analyzed a population of small cave bears from Ramesch Cave (2,000 m altitude) and one of larger cave bears from Gamssulzen Cave (1,300 m), situated approximately 10 km apart in the Austrian Alps (Figure 1A). We find no evidence of mitochondrial gene flow between these caves during the 15,000 years when they were both occupied by cave bears, although mitochondrial DNA sequences identical to those from Gamssulzen Cave could be recovered from a site located about 200 km to the south in Croatia. We also find no evidence that the morphology of the bears in the two caves changed to become more similar over time. We suggest that the two cave bear forms may have represented two reproductively isolated subspecies or species.

Animals↗

Radon measurements in the caves of Zonguldak (Turkey).

There are approximately 20 caves of limestone origin in Zonguldak (Turkey). In this study, the results of atmospheric radon measurements performed for two caves are presented. These caves, Gökgöl and Cehennemağzi, are open to tourism. Gökgöl Cave is the longer, at nearly 3,200 m in length. Cehenennemağzi is a pit-type cave with a total length of 85 m. The radon measurements were performed for 2 months between July 2004 and September 2004 using passive polycarbonate detectors. The mean radon concentrations were recorded as 1,918.8 Bq m(-3) in Gökgöl Cave and 657 Bq m(-3) in Cehennemağzi Cave. The maximum value corresponds to a site located 400 m from the entrance of Gökgöl Cave. Mean effective dose values for tourists of 0.86 microSv per visit to Cehennemağzi Cave and 3.76 microSv to Gökgöl Cave were obtained. These results show that protection against radiological hazards would not be necessary for visitors to these two caves.

Air Pollutants, Radioactive↗

Radon hazards, geology, and exposure of cave users: a case study and some theoretical perspectives.

The concerns over the risks to human health from radon in underground caves are poorly documented, unlike in workplace or domestic environments where exposures are relatively well known. In U.K. caves, radon has been identified as occurring at elevated levels; but with the exception of major show caves, its impact and risk to the many groups who use the caves have thus far received inadequate attention. This paper presents a survey performed in a relatively "low-risk" geographical area of the United Kingdom and quantifies the risk of exposure in this cave environment. Radon levels up to 12,552 Bq m(-3) were measured: Such concentrations are very high but are likely to underestimate the levels in many other parts of the cave system, for reasons associated with cave architecture and meteorology. This study confirms previous workers' conclusions that long-term users of deep caves, as opposed to rock shelters, are at risk. Annual doses to certain groups of cave users have been calculated to be as high as 120 mSv, a very high value. The study also demonstrates that there is variation both within and between caves as a result of subtleties of the bedrock geology, fault patterns, and weathering. This paper sets out a theoretical model.

Geological Phenomena↗

Sequence of mammalian fossils, including hominoid teeth, from the Bubing Basin caves, South China.

A Plio-Pleistocene to Holocene faunal sequence has been recovered from four carefully excavated caves in the Bubing Basin, adjacent to the larger Bose Basin of South China. The caves vary in elevation; we suggest that the higher caves were formed and filled with sediments prior to the lower caves. The highest deposits, which are from Mohui Cave, contain hominoid teeth and other fossilized remains of mammalian taxa most similar to late Pliocene and early Pleistocene faunas. Wuyun Cave ( approximately 50m lower in elevation than Mohui) contains a late middle Pleistocene fauna, which is supported by U-series age constraints from 350 to 200ka. Lower Pubu Cave ( approximately 23m below Wuyun) is assigned to the late Pleistocene, while the Cunkong Cave (the lowest, approximately 2m lower elevation than Lower Pubu) preserves a Holocene fauna. The four faunal assemblages indicate species-level changes in Ailuropoda, Stegodon, and Sus, the appearance of Elephas, the local disappearance of Stegodon, and the migration of Equus hemionus to South China. These initial results of our work call into question the continued value of the Stegodon/Ailuropoda Fauna, a category long used to characterize the Pleistocene faunas of South China. Excavation of karstic caves of varying elevation within the basins of South China holds promise for defining local sequences of mammalian fossils that can be used to investigate faunal variations related to climate change, biogeographic events, and evolutionary change over the past two million years. Stable isotopic analysis of a small sample of mammalian teeth from Bubing Basin caves is consistent with 100% C(3) vegetation in the Bubing/Bose region, with certain delta(13)C values consistent with a canopied woodland or forest. A preliminary assessment of the hominoid teeth indicates the presence of diverse molar and premolar morphologies including dental remains of Gigantopithecus blacki and a sample with similarities to the teeth reported from Longgupo.

Animals↗

Genetic divergence between cave and surface populations of Astyanax in Mexico (Characidae, Teleostei).

A study of genetic diversity at microsatellite loci and the mitochondrial DNA (mtDNA) cytochrome b gene was carried out to assess genetic relationships among four Mexican cave (Pachon, Sabinos, Tinaja, Chica) and four surface populations of Astyanax fasciatus (Characidae) from northeast Mexico and the Yucatan. With the exception of Chica, the cave populations were all characterized by extremely low microsatellite variability, which most likely resulted from bottleneck events. Population analyses of the microsatellite data indicated no measurable levels of gene flow between all cave and surface populations (F(ST) > 0.0707). Phylogenetic analyses of mtDNA data showed that only two cave populations - Sabinos and Tinaja - group together to the exclusion of surface populations. From the microsatellite data these cave populations cluster with the Pachon cave fish population. The mtDNA thus appears to have been replaced in Pachon because of introgressive hybridization. It is likely that these three cave populations have descended from a surface ancestor in common with current surface populations, rather than evolving recently from one of the extant surface populations. Like Pachon, the Chica population clustered with the surface populations according to mtDNA data, but was not clearly associated with either the surface or the other cave populations according to the microsatellite data. Our data indicate that the Chica population evolved recently from a surface population, and subsequently hybridized with a phylogenetically older cave population. In conclusion, both the microsatellite and mtDNA data suggest multiple origins of cave populations and the Chica and Sabinos/Tinaja/Pachon were founded after at least two independent invasions from surface populations.

Animals↗

Multi-omics reveal microbial functional traits and antifungal metabolites associated with lower Pseudogymnoascus destructans loads in bat cave soils.

White-nose syndrome, caused by Pseudogymnoascus destructans (Pd), is a major fungal disease threatening hibernating bats. Cave soils can serve as environmental reservoirs for Pd, yet the microbial and biochemical mechanisms underlying naturally low Pd burdens in some cave environments remain poorly understood. Here, we integrated soil microbiome profiling, metagenomics, metabolomics, multi-omics network analysis, and in vitro validation to investigate the ecological and functional basis of differential Pd loads in hibernating bat caves in Northeast China. The three caves shared cold, humid, and weakly acidic microenvironments, but differed significantly in electrical conductivity, soil water content, nutrient availability, and extracellular enzyme activities. Soil microbial communities showed significant inter-cave variation in composition, diversity, and niche breadth, with stochastic processes contributing substantially to community assembly. Environmental variables, particularly pH and Pd load, were important predictors of microbial community structure. Functional analyses revealed that the low-Pd Gezi Cave was enriched in genes associated with organic carbon degradation, nitrogen input and retention, and secondary metabolism. Metabolomic profiling further identified cave-specific metabolite signatures, among which Biochanin A, 4-Hydroxybenzaldehyde, Vanillin, and Arachidonic acid were negatively correlated with Pd loads. Integrated pathway and network analyses showed that differential genes and metabolites jointly mapped to secondary metabolite biosynthesis, aminobenzoate degradation, and flavonoid degradation pathways, forming a microbe-metabolite-functional gene coupling network involving key taxa such as Rhodococcus, Pseudorhodoplanes, and Rhodoplanes. In vitro assays confirmed that 4-Hydroxybenzaldehyde, Coumarin, and Vanillin inhibited Pd growth. Structural equation modelling further indicated that environmental heterogeneity was associated with variation in Pd loads through microbial functional attributes and metabolite profiles. These findings suggest that naturally low-Pd cave soils are associated with coordinated environmental filtering, microbial functional specialization, and antifungal metabolite production, providing mechanistic insight into microbial and biochemical constraints on Pd persistence in cave reservoirs.

Animals↗

Natural and human impacts on invertebrate communities in Brazilian caves.

Species richness, abundance, distribution and similarity between cave invertebrate communities were compared among seven caves located in the Peruaçu River valley, north of Minas Gerais State, Brazil. Such comparisons aimed to determinate the degree of biological complexity in the sampled caves, calculated by the "Index of Biological Complexity in Caves", presented in this manuscript. The presence of potential or real impacts on the cave fauna was also investigated. A total of 1,468 individuals belonging to 57 families of: Acarina, Pseudoscorpionida, Araneida, Opilionida, Amblypygi, Isopoda, Geophilomorpha, Scutigeromorpha, Spirostreptida, Coleoptera, Collembola, Diptera, Dictyoptera, Ephemeroptera, Ensifera, Heteroptera, Hymenoptera, Lepidoptera, Plecoptera, Psocoptera, and Trichoptera was collected. Caves with higher resource availability (as those hidrologicaly actives) had a higher biological complexity than those with less resource. There are two types of impacts that occur in the area: the natural (geological) and the anthropic, as intense "stepping" and visitation or use of cave entrances as cattle shelters. There are caves with different preservation degrees in the area, with invertebrate communities in varied complexity states. The communities of these caves undoubtedly deserve care, since the area is extremely important in the Brazilian biospeleological context.

Animals↗

Additional human remains from Blombos Cave, South Africa: (1999-2000 excavations).

The uppermost Middle Stone Age (MSA) layers at Blombos Cave contain high densities of Still Bay bifacial points. Information from other regional sites places the Still Bay prior to the Howiesons Poort industry, which has been dated at 65-70 ka. The Blombos Cave MSA strata have yielded nine human teeth or dental fragments. Four that were recovered during the 1997-1998 excavations have been published elsewhere. The remaining five were discovered during the 1999-2000 field seasons; these are described here. Three of the new specimens are deciduous teeth, and two are permanent premolar and molar crown fragments. The entire dental sample probably represents at least five and as many as seven individuals. The deciduous teeth from the upper MSA levels are likely to have been exfoliated in the cave. One deciduous tooth and the permanent tooth fragments from the lower MSA levels probably represent three individuals who died in or near the cave. The Blombos Cave premolars preserve horizontal circum-cervical striae suggestive of palliative tooth pick use. Approximately half of the permanent and deciduous crown diameters exceed those of recent Africans; for the remainder, the fossil values fall among modern African sample means. The Blombos Cave tooth crowns tend to be smaller than the majority of penecontemporaneous Neandertal teeth. The morphology of the Blombos Cave di is comparable to MSA homologues from the nearby, and presumably somewhat younger site of Die Kelders Cave 1.

Adult↗

Ancient DNA analyses reveal high mitochondrial DNA sequence diversity and parallel morphological evolution of late pleistocene cave bears.

Cave bears (Ursus spelaeus) existed in Europe and western Asia until the end of the last glaciation some 10,000 years ago. To investigate the genetic diversity, population history, and relationship among different cave bear populations, we have determined mitochondrial DNA sequences from 12 cave bears that range in age from about 26,500 to at least 49,000 years and originate from nine caves. The samples include one individual from the type specimen population, as well as two small-sized high-Alpine bears. The results show that about 49,000 years ago, the mtDNA diversity among cave bears was about 1.8-fold lower than the current species-wide diversity of brown bears (Ursus arctos). However, the current brown bear mtDNA gene pool consists of three clades, and cave bear mtDNA diversity is similar to the diversity observed within each of these clades. The results also show that geographically separated populations of the high-Alpine cave bear form were polyphyletic with respect to their mtDNA. This suggests that small size may have been an ancestral trait in cave bears and that large size evolved at least twice independently.

Animals↗

Recognition of microclimate zones through radon mapping, Lechuguilla Cave, Carlsbad Caverns National Park, New Mexico.

Radon concentrations range from less than 185 to 3,515 Bq m-3 throughout Lechuguilla Cave, Carlsbad Caverns National Park, New Mexico. Concentrations in the entrance passages and areas immediately adjacent to these passages are controlled by outside air temperature and barometric pressure, similar to other Type 2 caves. Most of the cave is developed in three geographic branches beneath the entrance passages; these areas maintain Rn levels independent of surface effects, an indication that Rn levels in deep, complex caves or mines cannot be simply estimated by outside atmospheric parameters. These deeper, more isolated areas are subject to convective ventilation driven by temperature differences along the 477-m vertical extent of the cave. Radon concentrations are used to delineate six microclimate zones (air circulation cells) throughout the cave in conjunction with observed airflow data. Suspected surface connections contribute fresh air to remote cave areas demonstrated by anomalous Rn lows surrounded by higher values, the presence of mammalian skeletal remains, CO2 concentrations and temperatures lower than the cave mean, and associated surficial karst features.

Air Pollutants, Radioactive↗