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PubMed2004

Multilocus analysis of variation and speciation in the closely related species Arabidopsis halleri and A. lyrata.

Nucleotide variation in eight effectively unlinked genes was surveyed in species-wide samples of the closely related outbreeding species Arabidopsis halleri and A. lyrata ssp. petraea and in three of these genes in A. lyrata ssp. lyrata and A. thaliana. Significant genetic differentiation was observed more frequently in A. l. petraea than in A. halleri. Average estimates of nucleotide variation were highest in A. l. petraea and lowest in A. l. lyrata, reflecting differences among species in effective population size. The low level of variation in A. l. lyrata is concordant with a bottleneck effect associated with its origin. The A. halleri/A. l. petraea speciation process was studied, considering the orthologous sequences of an outgroup species (A. thaliana). The high number of ancestral mutations relative to exclusive polymorphisms detected in A. halleri and A. l. petraea, the significant results of the multilocus Fay and Wu H tests, and haplotype sharing between the species indicate introgression subsequent to speciation. Average among-population variation in A. halleri and A. l. petraea was approximately 1.5- and 3-fold higher than that in the inbreeder A. thaliana. The detected reduction of variation in A. thaliana is less than that expected from differences in mating system alone, and therefore from selective processes related to differences in the effective recombination rate, but could be explained by differences in population structure.

Arabidopsis↗
PubMed2004

Impact of nonrandom mating on genetic variance and gene flow in populations with mass selection.

The mechanisms by which nonrandom mating affects selected populations are not completely understood and remain a subject of scientific debate in the development of tractable predictors of population characteristics. The main objective of this study was to provide a predictive model for the genetic variance and covariance among mates for traits subjected to directional selection in populations with nonrandom mating based on the pedigree. Stochastic simulations were used to check the validity of this model. Our predictions indicate that the positive covariance among mates that is expected to result with preferential mating of relatives can be severely overpredicted from neutral expectations. The covariance expected from neutral theory is offset by an opposing covariance between the genetic mean of an individual's family and the Mendelian sampling term of its mate. This mechanism was able to predict the reduction in covariance among mates that we observed in the simulated populations and, in consequence, the equilibrium genetic variance and expected long-term genetic contributions. Additionally, this study provided confirmatory evidence on the postulated relationships of long-term genetic contributions with both the rate of genetic gain and the rate of inbreeding (deltaF) with nonrandom mating. The coefficient of variation of the expected gene flow among individuals and deltaF was sensitive to nonrandom mating when heritability was low, but less so as heritability increased, and the theory developed in the study was sufficient to explain this phenomenon.

Genetic Variation↗
PubMed1999

Blood pressure, heart rate and motor activity in 6 inbred rat strains and wild rats (Rattus norvegicus): a comparative study.

Inbreeding for many generations under optimal environmental conditions may have favoured the survival of alleles for blood pressure increase in phenotypically normotensive rat strains. To prove this hypothesis we measured telemetrically systolic (SBP) and diastolic blood pressure (DBP), heart rate (HR) and motor activity (MA) in 6 inbred rat strains (BB, BN, LEW, DA, F344, WKY) and wild rats most probably possessing all of the alleles for normotension. For the first time it is shown that systolic blood pressure can significantly differ between normotensive inbred rat strains and that most probably some inbred rat strains will be characterised by a systolic blood pressure found in their progenitors, the wild rats. In addition, the typical night activity of rodents was not seen in 2 inbred rat strains. All findings together may be interpreted in the sense that most, if not all inbred rats strains have more or less disturbances in blood pressure, HR and/or MA and that there is most probably no "healthy" inbred rat strain available so that wild rats may be an alternative for crossing studies dissecting hypertension in particular and diseases in general.

Animals↗
PubMed2003

The Wakayama epileptic rat (WER), a new mutant exhibiting tonic-clonic seizures and absence-like seizures.

A new mutant, the Wakayama epileptic rat (WER), exhibiting both spontaneous absence-like behavior and tonic-clonic convulsions, was identified in a colony of Wistar rats. To determine clear seizure characteristics of this mutant strain, we analyzed the mode of inheritance of the convulsion and observed patterns of electroencephalogram (EEG) during the seizures. F1 progeny were produced between the founder male and normal females of the same colony. Animals were monitored through the inbreeding course to analyze genetic control of epileptic behavior. EEGs were recorded using affected animals in the F3-4 and post F13 generations. After the F2 generation, affected rats spontaneously exhibited both absence-like immobile behavior and tonic-clonic convulsions. The absence-like seizures were characterized by motor arrest and head droop. The tonic-clonic convulsions began with neck and forelimb clonus, wild jumping/running, and opisthotonic posturing, and evolved to tonic, then clonic convulsions. Most convulsion onsets occurred between 25-70 days of age. Mating experiments revealed that 0%(0/18) of the animals in F1, 10%(3/26) in F2, 17%(1/6) in backcross progeny and 86% (100/116) in progeny of crosses between epileptic rats showed tonic-clonic convulsions. Ictal cortical EEGs were characterized by 4-6 (5.1 +/- 0.4, mean +/- SD) Hz spike-and-wave complexes in the absence-like seizures and by low-voltage fast waves in the tonic-clonic convulsions. This new mutant rat spontaneously exhibited both absence-like and tonic-clonic seizures. The tonic-clonic seizure was inherited as an autosomal recessive trait with 86% incidence. Thus, the new mutant rat may become a useful model for studying human inherited epilepsies.

Animals↗
PubMed1981

[A new mutant in the mouse: peroneal muscular atrophy (author's transl)].

An anomaly of the hind limb has been found in the process of inbreeding of the CF#1 strain. The affected mouse showed a club foot at birth and unusual gait by a dropped foot in the adult. The growth of the affected mouse was slightly delayed in comparison with normal littermates, but reproductive performance was almost normal in both sexes. Anatomical and pathological studies revealed the atrophy of the peroneal muscle group and absence of the common peroneal nerves. The genetical studies showed that this anomaly was mainly controlled by a single autosomal recessive gene. The penetrance and expressivity of the gene was complete in the original or related strains, but incomplete in the other genetic backgrounds. This major gene has been named peroneal muscular atrophy (gene symbol: pma).

Animals↗
PubMed1994

Establishment of new inbred strains derived from Japanese wild rats (Rattus norvegicus).

Inbreeding of Japanese wild rats (Rattus norvegicus) resulted in five new strains. The conception rates of wild rat strains were lower than those of inbred laboratory strains, and maternal aggressiveness was observed in some wild strains. The body size of domesticated animals was larger than that of captured ancestors. Two strains have been established as inbred strains; the MITA strain has been tamed to the level of laboratory rats, while the nature of the MITD strain is wild. The MITB strain was derived from the MITA strain as a coat color variant. The MITC and MITE strains have been bred to the F15 and F11 generations, respectively. The new strains can provide new genetic variations against a wild type background and might be useful for physiological and psychological experiments.

Animals↗
PubMed2004

Populational genetic structure of free-living maned wolves (Chrysocyon brachyurus) determined by proteic markers.

Electrophoretic analysis of presumptive twenty gene loci products was conducted in hemolisates and plasma samples of twenty-eight maned wolves (Chrysocyon brachyurus) from an area in northeastern São Paulo State, Brazil. The area sampled was divided into three sub-areas, with the Mogi-Guaçu and Pardo rivers regarded as barriers to the gene flow. The polymorphism degree and heterozygosity level (intralocus and average) estimated in this study were similar to those detected by other authors for maned wolves and other species of wild free-living canids. The samples of each sub-area and the total sample exhibited genotype frequencies consistent with the genetic equilibrium model. The values of the F-statistics evidenced absence of inbreeding and population subdivision and, consequently, low genetic distances were found among the samples of each area.

Animals↗
PubMed1994

Development of a strain of rabbits with congenital simple nonsyndromic coronal suture synostosis. Part I: Breeding demographics, inheritance pattern, and craniofacial anomalies.

The lack of an animal model of congenital coronal suture (CS) synostosis has prompted the widespread use of an experimental rabbit model using adhesive immobilization of the CS. Such postnatal models have helped make significant scientific contributions but may still not fully represent all aspects of the human congenital condition. In the March 1993 issue of The Cleft Palate-Craniofacial Journal we reported a female rabbit born in our laboratory with complete bilateral CS synostosis. This follow-up study presents our attempts to breed this animal and establish a strain of craniosynostotic rabbits. To date, we have accomplished 10 back- and intercrosses with these animals and have produced a total of 71 live offspring; 10 animals exhibited complete nonsyndromic unilateral (plagiocephalic) or bilateral (brachycephalic) CS synostotic deformities at birth, and 19 animals exhibited partial CS synostosis that showed more than 75% growth retardation across the CS (well below the 95% confidence interval for normals). Results revealed that gestational time and litter size averages were consistent with those reported for the strain, although the average litter size decreased with increased inbreeding. By 1.5 weeks of age the completely synostosed animals already exhibited brachycephalic cranial vaults and midfacial hypoplasia compared to unaffected siblings. Initial pedigree analysis suggested an autosomal dominant inheritance pattern with incomplete penetrance and variable expressivity. The development of such a congenital rabbit model may prove useful in helping to understand the etiopathogenesis of this condition in human populations.

Animals↗
PubMed2004

Congenital neuropathy and dilution of feather melanin in nestlings of urban-breeding northern goshawks (Accipiter gentilis).

A pair of northern goshawks (Accipiter gentilis) breeding in a public park in the city center of Hamburg, Germany, raised 12 healthy and five aberrant offspring between 1996 and 2000. Aberrant nestlings (three males and two females) had pale silver-blue plumage and displayed severe locomotor disorders. Histopathologically, the defects were characterized by adendritic feather melanocytes and mild degeneration of the cerebellar white matter. Epidemiologic results were suggestive of a hereditary autosomal recessive defect, which may have originated from close inbreeding during the foundation of Hamburg's urban population of northern goshawks.

Animals↗
PubMed2002

Fertility insurance and the sex ratios of malaria and related hemospororin blood parasites.

The sex ratio (z*; proportion of gametocytes that are male) of malaria and related hemospororin blood parasites has been predicted to be related to the inbreeding rate (f) by the simple equation z* = (1 - f)/2. Although there is some empirical support for this prediction, there are several cases where the sex ratio is less female biased or more variable than expected. Here, we present a theoretical model that may be able to explain some of these discrepancies. We show that if low gametocyte densities lead to a danger that female gametes may not encounter any male gametes, then natural selection favors a less female-biased sex ratio as a form of 'fertility insurance' to ensure that female gametes are mated. This model can be applied to a number of situations. In particular, (1) empirical data suggest that the number of gametocyes per blood meal can be low enough to favor fertility insurance in some Plasmodium infections in humans and (2) our model predicts facultative shifting toward less-biased sex ratios in response to immune pressure that reduces gametocyte or gamete survival or mobility, consistent with some recent experimental data from Plasmodium species of birds and mice.

Animals↗
PubMed1990

Mass selection for increased 70-day weight in a closed line of Landrace pigs.

Mass selection for increased weight at 70 d of age was practiced for six generations in a line of Landrace pigs. It was desired to have the next generation sired by the heaviest nine boars and out of the heaviest 27 gilts. A contemporaneous, randomly selected (by pedigree) control line was maintained in which the next generation was sired by five boars and out of 10 gilts. Inbreeding coefficients were .208 and .214 for the selected and control line litters and .177 and .189 for the selected and control line dams in the sixth generation, respectively. A total of 1,906 pigs was farrowed with 70-d weights collected on 1,267 pigs. These pigs were sired by 88 boars and out of 190 gilts. The generation interval was 13 mo. Six traits were studied: birth, 21-d, 35-d and 70-d weights and preweaning (from birth to 35 d) and postweaning (from 35 to 70 d) daily gains. Direct and correlated responses per generation and per weighted cumulative selection differential (WCSD) were estimated. Total WCSD for 70-d weight was 30.3 kg. This corresponds to a standardized WCSD of 6.11 phenotypic standard deviations. The response per generation for 70-d weight was .65 +/- .29 kg. The realized heritability for 70-d weight was .13 +/- .06. Nearly all the increased weight at 70 d was the result of more rapid growth in the postweaning period, with little difference in growth in the preweaning period; birth, 21-d and 35-d weights and preweaning daily gains remained unchanged by selection for 70-d weight.

Animals↗
PubMed1991

Mass selection for increased 200-day weight in a closed line of Duroc pigs.

Mass selection for increased weight at 200 d of age was conducted for six generations in a line of Duroc pigs. A randomly selected contemporary control line was maintained. Our objectives were to observe the response in 200-d weight, to measure correlated responses in weights at earlier ages, daily gains and ultrasound backfat thickness and to compare three methods for estimating responses to selection. Inbreeding coefficients averaged .213 and .202 for the select- and control-line pigs and .200 and .173 for the select- and control-line dams in the sixth generation, respectively. A total of 1,866 pigs were farrowed; 200-d weights were collected on 798 of them. These pigs were sired by 89 boars and were out of 193 sows. Twelve traits were studied: weights at birth and at 21, 35, 70, 154 and 200 d of age, daily gains from birth to 35 d, 35 d to 70 d, 70 d to 154 d and 154 d to 200 d, ultrasound backfat thickness at 200 d and ultrasound backfat thickness adjusted for 200-d weight. Three methods for estimating responses to selection gave similar results; therefore, the estimates were averaged. Total weighted cumulative selection differential for 200-d weight was 81.7 kg with a response in 200-d weight of 2.5 +/- 1.2 kg/generation. This response corresponds to a realized heritability for 200-d weight of .18 +/- .08. Increased weight at 200 d was the result of more rapid growth in the 154- to 200-d period, with decreased growth in the period from birth to 35 d. Growth at other periods was not changed significantly. Ultrasound backfat thickness at 200 d increased in the select line compared to the control line, but not when adjusted for 200-d weight.

Adipose Tissue↗
PubMed1991

Mass selection for increased 200-day weight in a closed line of Landrace pigs.

Mass selection for increased weight at 200 d of age was conducted for six generations in a line of Landrace pigs. In the select line, the heaviest nine boars and 18 gilts were selected from each generation to produce the subsequent generation. A contemporaneous control line was maintained by randomly selecting a son from each sire and a daughter from each dam to attain a line size of five boars and 10 gilts. Inbreeding coefficients averaged .182 and .191 for the select- and control-line pigs and .150 and .162 for the select- and control-line dams, respectively, in the sixth generation. The 200-d weights and ultrasound backfat thickness data were collected from 1,022 pigs of 2,181 pigs farrowed. These pigs were sired by 92 boars and out of 210 sows. The generation interval was 13 mo. Twelve traits were studied: weights at birth and at 21, 35, 70, 154, and 200 d of age; daily gains from birth to 35 d, 35 to 70 d, 70 to 154 d, and 154 to 200 d; ultrasound backfat thickness at 200 d; and ultrasound backfat thickness adjusted for 200-d weight. Total weighted cumulative selection differential for 200-d weight was 88.7 kg. Realized heritability for 200-d weight was .26 +/- .08 with an average response of 4.2 +/- 1.3 kg/generation. Correlated responses resulted in increases for all weights and daily gains evaluated. Although ultrasound backfat thickness at 200 d increased in the select line compared to the control line, it was not altered by selection for 200-d weight when adjusted for 200-d weight.

Adipose Tissue↗
PubMed1992

Simple and rapid inversion of additive relationship matrices incorporating parental uncertainty.

Animals bred in pastoral systems are often part of multiple-sire groups, introducing uncertainty into pedigrees. Genetic evaluation of sires and dams in such instances is complicated by the uncertainty of parenthood. This article defines a simple and rapid algorithm to compute the inverse of a numerator relationship matrix under uncertain parenthood. The algorithm can accommodate inbreeding and uncertainty of parenthood on both paternal and maternal sides of the pedigree.

Algorithms↗
PubMed1992

Classical and mixed-model analysis of an index selection experiment for fecundity in Drosophila melanogaster.

A comparison of three family indices to increase number of pupas from 3-d lay in Drosophila melanogaster is reported. The three indices were Id, based exclusively on dam's information; Ihd, based additionally on dam's full-sibs' and half-sibs' information; and Ihs, which also included the sire's full-sibs' and half-sibs' records. Three lines, D, HD, and HS, were selected, each according to one of the three indices: Id, Ihd, or Ihs. Each line consisted of 10 sires and 60 dams. Each dam contributed one male offspring and three female offspring. Seven generations of selection were performed in a two-replicate experiment. The expected advance of Ihs and Ihd over Id in the seventh generation was .38 and .15 phenotypic standard deviations, respectively. The experiment was analyzed in terms of both classical ordinary least squares (OLS) and mixed-model methodology (MMM). The phenotypic trends in the first replicate were 4.06 +/- 1.74, 1.42 +/- 1.76, and .26 +/- 1.94 pupas per generation for Lines D, HD, and HS, respectively, and in the second replicate 8.52 +/- 2.40, 6.16 +/- 3.21, and 4.21 +/- 2.60, respectively. The genetic trends in the first replicate were 2.18 +/- .61, 1.08 +/- .67, and .24 +/- .68 pupas per generation and, in the second replicate, 2.51 +/- .60, .16 +/- .61, and .05 +/- .64 for Lines D, HD, and HS, respectively. Despite theoretical expectations, the Id index was consistently better than the more complex indices. Several explanations for these results are possible: 1) smaller than expected selection differential, 2) inbreeding depression, and 3) incorrect heritability used to construct the indices.(ABSTRACT TRUNCATED AT 250 WORDS)

Analysis of Variance↗
PubMed1994

Quantitative- and molecular-genetic effects on animal well-being: adaptive mechanisms.

Domestic farm animals play an important role in meeting some basic needs of humankind, especially food and clothing. The aspects of genetic improvement programs in livestock production pertinent to animal welfare and animal well-being are reviewed. A link is made between the evolutionary processes of adaptation and domestication and animal well-being. Animal behavior is a component of all these. Thus, the genetics of behavior may provide clues to the well-being of farm animal populations, and it will also be of relevance to public opinion issues of animal welfare. Many expressions of behavior by domestic livestock may be influenced by those processes that change gene as well as genotypic frequencies such as inbreeding, drift, and artificial selection. The environment in which the individual lives will also play a role, along with the interaction between genotype and environment. Selection for or against such behaviors as aggressiveness, docility, response to stress, and certain sexual behaviors in some livestock species has often been successful. This points to the existence of additive genetic variation for behavior, and scope for the inclusion of behavioral traits into selection programs, if these measures are shown to be related to welfare. Negative relationships between behaviors associated with well-being and traits of economic importance have been reported in most livestock species. However, estimates of genetic parameters, especially genetic correlations between objective measures of well-being and production traits, are scarce. There have been no comprehensive studies of the welfare of transgenic animals reported in the scientific literature. Increased use of biotechnology in animal agriculture, coupled with greater public scrutiny of livestock industries, may precipitate decisions concerning the interface of behavior and genetics that need to be addressed before scientists can conduct appropriate experimental evaluations.

Adaptation, Physiological↗
PubMed1996

Mass selection for 70-day body weight in rabbits.

Five generations of phenotypic mass selection for increased 70-d body weight (market age, MW) were conducted in an experimental population of rabbits. Market-age weight was recorded for 1,616 rabbits from 336 litters (sired by 121 bucks and reared by 321 does). Additional growth and carcass traits measured in control (C) and select (S) lines were 28-d weaning weight (WW), 28- to 70-d average daily gain (ADG), carcass yield percentage (CY), loin primal cut percentage (LP), and lean-to-bone ratio in the loin primal cut (LBR). Average inbreeding coefficients in litters by the fifth generation were 10.3 and 11.2% for C and S lines, respectively. After five generations the difference in weighted cumulative selection differential between lines for MW was 1,015 g. Using an animal model with REML and regression procedures, observed and realized estimated heritabilities for MW were .12 and .11, respectively. Estimates of heritability by REML were .04, .17, .37, .25, and .35 for WW, ADG, CY, LP, and LBR, respectively. Bivariate REML estimates of direct genetic, common litter, and residual correlations between MW and a second growth trait (WW or ADG) were all positive and moderate to high in magnitude (range of .56 to .98). At generation five, mean direct breeding values of S and C line rabbits for MW were 133.2 and 12.0 g. Genetic trends were 29.1 and 29.4 g per generation for MW, estimated according to regressions of estimated mean breeding value (obtained from mixed-model analyses) or of observed S minus C line mean differences on generation number, respectively. Correlated response for WW, ADG and LBR was consistently favorable, whereas results for other carcass traits studied were inconclusive. Selection was effective for increasing MW performance.

Animals↗
PubMed2005

Incidence of splayleg pigs in Nebraska litter size selection lines.

Genetic parameters for the splayleg (SL) condition were estimated from 37,673 records of pigs from six lines derived from a Large White-Land-race base population. Random selection for 22 generations was practiced in Lines C1 and C2. Line C2 was derived from C1 at Generation 8. Selection lines were as follows: 1) Line I, selected 11 generations for an index of ovulation rate and embryonic survival followed by 11 generations of selection for litter size; 2) Line IOL, derived from Line I at Generation 8 and which underwent eight generations of two-stage selection for ovulation rate and number of fully formed pigs per litter followed by four generations of litter size selection; 3) Line COL, derived from Line C1 at Generation 8 and selected eight generations in two stages for ovulation rate and number of fully formed pigs followed by four generations of litter size selection; and 4) Line T, selected 12 generations for increased testis size. From logistic models, it was found that boars were 224% more likely to have SL than gilts (P < 0.01). Decreases in birth weight, dam age at puberty, dam nipple number, and dam embryonic survival, and increases in dam litter size and inbreeding increased the odds of SL (P < 0.05). Direct and maternal heritabilities of SL were 0.07 and 0.16, respectively, and the correlation between direct and maternal effects was -0.24. Correlations between direct genetic effects for SL and number born alive, nipple number, birth weight, age at puberty, and embryonic survival were -0.19, -0.36, 0.23, -0.19, and -0.32, respectively. Except for the correlation of 0.32 between maternal effects for SL and direct effects for number of live pigs, correlations of SL maternal genetic effects with direct genetic effects of other traits were less than 0.11. Annual direct genetic trends (%) for SL in I, IOL, COL, T, C1, and C2 were -0.003 +/- 0.003, 0.121 +/- 0.012, -0.273 +/-0.009, 0.243 +/-0.014, -0.274 +/-0.004, and 0.086 +/-0.008, respectively; annual maternal genetic trends (%) were 0.106 +/-0.004, 0.508 +/-0.019, 0.383 +/-0.015, 0.527 +/-0.024, 0.188 +/-0.005, and 0.113 +/-0.012, respectively. Annual genetic maternal trend in Line I after Generation 12 was 0.339 +/-0.014. Maternal breeding value for SL is expected to increase as a correlated response to selection for increased litter size and increased size of testes.

Animals↗