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PubMed2002

Evidence of low gene flow in a neotropical clustered tree species in two rainforest stands of French Guiana.

The spatial genetic structure of the neotropical, clustered tree species Vouacapoua americana (Aublet) was studied in two natural forest stands (Paracou and Nouragues) in French Guiana. Using eight microsatellite loci, V. americana is characterized by a marked genetic structure at small spatial distances (under 30-60 m), in agreement with the limited seed dispersal by rodent species. Gene flow through pollen is also shown to be mainly restricted to less than 100 m. This result suggests that most pollination events (mediated through small insects) are probably limited to within-patches of individuals, which might explain the high genetic differentiation among patches (F(ST) = 0.11) separated by less than 2 km. We also assume that stronger genetic structure in Paracou is likely to be due to lower seed dispersal by rodents, large spatial distances separating patches, or a recent recolonization event.

DNA, Plant↗
PubMed2004

Spatial heterogeneity, social structure and disease dynamics of animal populations.

Social groupings, population dynamics and population movements of animals all give rise to spatio-temporal variations in population levels. These variations may be of crucial importance when considering the spread of infectious diseases since infection levels do not increase unless there is a sufficient pool of susceptible individuals. This paper explores the impact of social groupings on the potential for an endemic disease to develop in a spatially explicit model system. Analysis of the model demonstrates that the explicit inclusion of space allows asymmetry between groups to arise when this was not possible in the equivalent spatially homogeneous system. Moreover, differences in movement behaviours for susceptible and infected individuals gives rise to different spatial profiles for the populations. These profiles were not observed in previous work on an epidemic system. The results are discussed in an ecological context with reference to furious and dumb strains of infectious diseases.

Animal Diseases↗
PubMed2006

Spatial and temporal structure of typhoid outbreaks in Washington, D.C., 1906-1909: evaluating local clustering with the Gi* statistic.

BACKGROUND: To better understand the distribution of typhoid outbreaks in Washington, D.C., the U.S. Public Health Service (PHS) conducted four investigations of typhoid fever. These studies included maps of cases reported between 1 May - 31 October 1906 - 1909. These data were entered into a GIS database and analyzed using Ripley's K-function followed by the Gi* statistic in yearly intervals to evaluate spatial clustering, the scale of clustering, and the temporal stability of these clusters. RESULTS: The Ripley's K-function indicated no global spatial autocorrelation. The Gi* statistic indicated clustering of typhoid at multiple scales across the four year time period, refuting the conclusions drawn in all four PHS reports concerning the distribution of cases. While the PHS reports suggested an even distribution of the disease, this study quantified both areas of localized disease clustering, as well as mobile larger regions of clustering. Thus, indicating both highly localized and periodic generalized sources of infection within the city. CONCLUSION: The methodology applied in this study was useful for evaluating the spatial distribution and annual-level temporal patterns of typhoid outbreaks in Washington, D.C. from 1906 to 1909. While advanced spatial analyses of historical data sets must be interpreted with caution, this study does suggest that there is utility in these types of analyses and that they provide new insights into the urban patterns of typhoid outbreaks during the early part of the twentieth century.

Disease Outbreaks↗
PubMed2002

A geostatistical analysis of the geographic distribution of lymphatic filariasis prevalence in southern India.

Gaining a better understanding of the spatial population structure of infectious agents is increasingly recognized as being key to their more effective mapping and to improving knowledge of their overall population dynamics and control. Here, we investigate the spatial structure of bancroftian filariasis distribution using geostatistical methods in an endemic region in Southern India. Analysis of a parasite antigenemia prevalence dataset assembled by sampling 79 villages selected using a World Health Organization (WHO) proposed 25 x 25 km grid sampling procedure in a 225 x 225 km area within this region was compared with that of a corresponding microfilaraemia prevalence dataset assembled by sampling 119 randomly selected villages from a smaller subregion located within the main study area. A major finding from the analysis was that once large-scale spatial trends were removed, the antigenemia data did not show evidence for the existence of any small-scale dependency at the study sampling interval of 25 km. By contrast, analysis of the randomly sampled microfilaraemia data indicated strong spatial contagion in prevalence up to a distance of approximately 6.6 kms, suggesting the likely existence of small spatial patches or foci of transmission in the study area occurring below the sampling scale used for sampling the antigenemia data. While this could indicate differences in parasite spatial population dynamics based on antigenemia versus microfilaraemia data, the result may also suggest that the WHO recommended 25 x 25 km sampling grid for rapid filariasis mapping could have been too coarse a scale to capture and describe the likely local variation in filariasis infection in this endemic location and highlights the need for caution when applying uniform sampling schemes in diverse endemic regions for investigating the spatial pattern of this parasitic infection. The present results, on the other hand, imply that both small-scale spatial processes and large-scale factors may characterize the observed distribution of filariasis in the study region. Our preliminary analysis of a mountain range associated large-scale trend in the antigenemia data suggested that a nonlinear relationship of infection prevalence with elevation might be a factor behind such observed global spatial patterns. We conclude that geostatistic methods can provide a powerful framework for carrying out the empirical investigation and analysis of parasite spatial population structure. This study shows that their successful application, however, will crucially depend on our gaining a more thorough understanding of the appropriate geographic scales at which spatial studies should be carried out.

Adult↗
PubMed2004

Mitochondrial DNA signatures of restricted gene flow within divergent lineages of an atyid shrimp (Paratya australiensis).

We measured spatial genetic structure within three previously described mitochondrial lineages of the atyid shrimp, Paratya australiensis, occurring in upland streams of two major catchments within the Sydney Water Supply Catchment, New South Wales, Australia. In all three lineages, there was significant spatial structuring of genetic variation between catchments. In two lineages, recurrent but restricted maternal gene flow has apparently predominated in shaping within-catchment genetic structure, although this framework may be overlaid with episodic contiguous/long-distance expansion events. In the third lineage, there was no evidence of spatial genetic structuring within one of the catchments, because one haplotype was both common and widespread throughout the sampled area. High-frequency haplotypes were also shared among subcatchments in the other two lineages, and we discuss both historical and contemporary processes that may have left these genetic signatures. Our results are generally concordant with previous reports of significant population structuring in P. australiensis, occurring in upland river reaches elsewhere in eastern Australia. We propose that restricted dispersal and gene flow among upland populations of P. australiensis is linked to dramatic architectural structuring within and among mountain streams.

Analysis of Variance↗
PubMedDate not supplied

[Characteristics of the spatial and biocenotic structure of the Transural steppe plague reservoir].

In the trans-Uralian steppe focus, the manifestations of plague are characterized by a cyclical pattern. Nine epizooties, each lasting 1 to 16 years, were identified in this region in 1913 to 1992. The interepizootic periods varied from 1-3 to 17 years. Plague was most commonly manifested in the south of the focus (8 cycles) in the mixed habitats of small sousliks, giant and minor day jirds. Since the 1960s when there were steady-state habitats of giant day jirds in this region, the interepizootic periods have reduced to 4 years. In the north of the focus, plague was much less frequently registered (4 cycles) in the habitats of minor day jirds and the maximum interepizootic period was 36 years. The topography of epizooties shows an irregular pattern of their spatial arrangement and a pronounced confinement to specific sites of the area. Differentiation of epizootic sectors by the incidence of recurrent plague and its duration makes it possible to identify the "cores" of epizooties at these sites.

Animals↗
PubMed2006

Recent results on modelling the spatial and temporal structure of the Earth's gravity field.

The Earth's gravity field plays a central role in sea-level change. In the simplest application a precise gravity field will enable oceanographers to capitalize fully on the altimetric datasets collected over the past decade or more by providing a geoid from which absolute sea-level topography can be recovered. However, the concept of a static gravity field is now redundant as we can observe temporal variability in the geoid due to mass redistribution in or on the total Earth system. Temporal variability, associated with interactions between the land, oceans and atmosphere, can be investigated through mass redistributions with, for example, flow of water from the land being balanced by an increase in ocean mass. Furthermore, as ocean transport is an important contributor to the mass redistribution the time varying gravity field can also be used to validate Global Ocean Circulation models. This paper will review the recent history of static and temporal gravity field recovery, from the 1980s to the present day. In particular, mention will be made of the role of satellite laser ranging and other space tracking techniques, satellite altimetry and in situ gravity which formed the basis of gravity field determination until the last few years. With the launch of Challenging Microsatellite Payload and Gravity and Circulation Experiment (GRACE) our knowledge of the spatial distribution of the Earth's gravity field is taking a leap forward. Furthermore, GRACE is now providing insight into temporal variability through 'monthly' gravity field solutions. Prior to this data we relied on satellite tracking, Global Positioning System and geophysical models to give us insight into the temporal variability. We will consider results from these methodologies and compare them to preliminary results from the GRACE mission.

Earth, Planet↗
PubMed2004

Spatial and temporal structure of phase synchronization of spontaneous alpha EEG activity.

Spatiotemporal characteristics of spontaneous alpha EEG activity patterns are analyzed in terms of large-scale phase synchronization. During periods with strong phase synchronization over the entire scalp, phase patterns take either of two forms; one is a gradual phase shift between frontal and occipital regions and the other is a stepwise pattern with a sudden phase shift in the central region. The former is regarded as a traveling wave of electrocortical activity, of which the direction of propagation is predominantly from anterior to posterior in three out of four subjects, and opposite in the remaining one. The other activity pattern observed may correspond to a standing wave composed of two traveling waves propagating in opposite directions. The duration distributions of these patterns have similar forms within a subject, which suggests that they share the same mechanism for their generation.

Adolescent↗
PubMed2003

Forward masking of faces by spatially quantized random and structured masks: on the roles of wholistic configuration, local features, and spatial-frequency spectra in perceptual identification.

The forward masking of faces by spatially quantized masking images was studied. Masks were used in order to exert different types of degrading effects on the early representations in facial information processing. Three types of source images for masks were used: Same-face images (with regard to targets), different-face images, and random Gaussian noise that was spectrally similar to facial images. They were all spatially quantized over the same range of quantization values. Same-face masks had virtually no masking effect at any of the quantization values. Different-face masks had strong masking effects only with fine-scale quantization, but led to the same efficiency of recognition as in the same-face mask condition with the coarsest quantization. Moreover, compared with the noise-mask condition, coarsely quantized different-face masks led to a relatively facilitated level of recognition efficiency. The masking effect of the noise mask did not vary significantly with the coarseness of quantization. The results supported neither a local feature processing account, nor a generalized spatial-frequency processing account, but were consistent with the microgenetic configuration-processing theory of face recognition. Also, the suitability of a spatial quantization technique for image configuration processing research has been demonstrated.

Adult↗
PubMed1998

The golgi apparatus in honeybee photoreceptor cells: structural organization and spatial relationship to microtubules and actin filaments

The architecture of the Golgi complex in honeybee photoreceptors has been analyzed by electron-microscopic techniques. The Golgi apparatus consists of several hundred individual stacks of cisternae dispersed throughout the soma of the photoreceptor cell. Two distinct subpopulations of Golgi stacks are distinguishable by their topographic features: (1) a dense row of Golgi stacks is aligned along the palisade-like cisternae of smooth endoplasmic reticulum backing the photoreceptive microvilli; (2) other Golgi stacks are scattered in the remainder of the cell body. The spatial relationship of Golgi stacks to microtubules and actin filaments has also been determined. Electron-microscopic examination of high-pressure-frozen freeze-substituted retinae reveals that Golgi stacks backing the submicrovillar endoplasmic reticulum reside in a cell area without microtubules, whereas the second subpopulation of Golgi stacks is embedded amidst microtubules. Labeling studies with several actin-specific probes, viz., rhodamine phalloidin, monoclonal anti-actin antibodies, and myosin fragments, provide evidence for a juxtaposition of the submicrovillar Golgi stacks to actin filaments. The Golgi membranes are thus ideally positioned to facilitate the transport of Golgi-derived material toward the microvilli along actin filaments.

Journal Article↗
PubMed2005

Specific recognition of the collagen triple helix by chaperone HSP47: minimal structural requirement and spatial molecular orientation.

The unique folding of procollagens in the endoplasmic reticulum is achieved with the assistance of procollagen-specific molecular chaperones. Heat-shock protein 47 (HSP47) is an endoplasmic reticulum-resident chaperone that plays an essential role in normal procollagen folding, although its molecular function has not yet been clarified. Recent advances in studies on the binding specificity of HSP47 have revealed that Arg residues at Yaa positions in collagenous Gly-Xaa-Yaa repeats are critical for its interactions (Koide, T., Takahara, Y., Asada, S., and Nagata, K. (2002) J. Biol. Chem. 277, 6178-6182; Tasab, M., Jenkinson, L., and Bulleid, N. J. (2002) J. Biol. Chem. 277, 35007-35012). In the present study, we further examined the client recognition mechanism of HSP47 by taking advantage of systems employing engineered collagen model peptides. First, in vitro binding studies using conformationally constrained collagen-like peptides revealed that HSP47 only recognized correctly folded triple helices and that the interaction with the corresponding single-chain polypeptides was negligible. Second, a binding study using heterotrimeric model clients for HSP47 demonstrated a minimal requirement for the number of Arg residues in the triple helix. Finally, a cross-linking study using photoreactive collagenous peptides provided information about the spatial orientation of an HSP47 molecule in the chaperone-collagen complex. The obtained results led to the development of a new model of HSP47-collagen complexes that differs completely from the previously proposed "flying capstan model" (Dafforn, T. R., Della, M., and Miller, A. D. (2001) J. Biol. Chem. 276, 49310-49319).

Amino Acid Sequence↗
PubMed2000

Discovery of Spatial and Spectral Structure in the X-Ray Emission from the Crab Nebula.

The Chandra X-Ray Observatory observed the Crab Nebula and pulsar during orbital calibration. Zeroth-order images with the High-Energy Transmission Grating (HETG) readout by the Advanced CCD Imaging Spectrometer spectroscopy array (ACIS-S) show a striking richness of X-ray structure at a resolution comparable to that of the best ground-based visible-light observations. The HETG-ACIS-S images reveal, for the first time, an X-ray inner ring within the X-ray torus, the suggestion of a hollow-tube structure for the torus, and X-ray knots along the inner ring and (perhaps) along the inward extension of the X-ray jet. Although complicated by instrumental effects and the brightness of the Crab Nebula, the spectrometric analysis shows systematic variations of the X-ray spectrum throughout the nebula.

Journal Article↗