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PubMed1980

Status of vitamin E as an erythropoietic factor.

There is now convincing evidence that vitamin E is a specific erythropoietic factor for nonhuman primates and swine. There is no evidence, however, that vitamin E is normally required as an erythropoietic factor for humans and many species of animals. We propose that the lack of a requirement for vitamin E in erythropoiesis in humans is due to a metabolic adaptation that circumvents the need for the role that the vitamin otherwise would serve. There is reason to believe that this metabolic adaptation is deranged in patients with protein-calorie malnutrition. These patients respond with reticulocytosis and a limited increase in hemoglobin concentration when vitamin E is given before their metabolic derangement is reversed by correcting their other nutritional deficiencies. Given this information, we may predict that other acquired or congenital abnormalities of metabolism could impair the adaptation that circumvents the role of vitamin E in erythropoiesis. Therefore, vitamin E should be viewed as a potential erythropoietic factor for humans, and it should receive further carefully controlled therapeutic trials in patients with anemia of obscure etiology, particularly in those with erythroid hyperplasia and unexplained ineffective erythropoiesis.

Adaptation, Physiological↗
PubMed1993

Development of artificial neural filters for pattern recognition in protein sequences.

Four different artificial neural network architectures have been tested for their suitability to extract and predict sequence features. For optimization of the network weights an evolutionary computing method has been applied. The networks have feedforward architecture and provide adaptive neural filter systems for pattern recognition in primary structures and sequence classification. The recognition and prediction of signal peptidase cleavage sites of E. coli periplasmic protein precursors serves as an example for filter development. The primary structures are represented by seven physicochemical residue properties. This amino acid description provides the feature space for network optimization. The properties hydrophobicity, hydrophilicity, side-chain volume, and polarity allowed an accurate classification of the data. A three-layer network architecture reached a learning success of 100%; the highest prediction accuracy in an independent test set of sequences was 97%. This network architecture appears to be most suited for the analysis of E. coli signal peptidase cleavage sites. Further suggestions about the design and future applications of artificial neural networks for protein sequence analysis are made.

Bacterial Proteins↗
PubMed1985

Cardiac reactivity and adaptive behavior.

The relationship between adaptive behavioral function and cardiac reactivity to auditory, somatosensory, and visual stimuli was evaluated using a heterogeneous population of developmentally disabled infants and young children. Stimuli of all sensory modalities resulted predominantly in a cardiac deceleration, and the magnitude of these responses varied systematically between subjects. A multiple regression analysis revealed that 60% of the variance in adaptive behavior, as measured by the Adaptive Behavior Scale for Infants and Early Childhood, could be accounted for by age and the cardiac responses. The factor with the greatest predictive weighting was cardiac reactivity to a vibrotactile stimulus, which showed a correlation of .65 with adaptive behavior scores.

Acoustic Stimulation↗
PubMed1995

[A method of evaluation of the adaptation process].

The problem of adaptation cannot be reasonable well studied without due regard of the principle of reflection. The relationship between adaptation and reflection is realized in, for instance, the adequacy of body reactions to environmental impacts. The paper approaches this problem in the light of thermodynamics. A simple method for accounting the process of adaptation to continuous exposure in specially designed sealed chamber on the pattern of shift work of operators is proposed. The investigation embraced 29 divers aged 20-25 who stayed in shifts for long periods in a chamber with artificially and synthetically sustained air parameters. The investigation demonstrated the effectiveness of the description of adaptation process through probabilistic models with a high level of generalization, and the possibility to predict operator's functioning at various phases of his work cycle.

Adaptation, Physiological↗
PubMed2000

Tilt aftereffects in a self-organizing model of the primary visual cortex.

RF-LISSOM, a self-organizing model of laterally connected orientation maps in the primary visual cortex, was used to study the psychological phenomenon known as the tilt aftereffect. The same self-organizing processes that are responsible for the long-term development of the map are shown to result in tilt aftereffects over short timescales in the adult. The model permits simultaneous observation of large numbers of neurons and connections, making it possible to relate high-level phenomena to low-level events, which is difficult to do experimentally. The results give detailed computational support for the long-standing conjecture that the direct tilt aftereffect arises from adaptive lateral interactions between feature detectors. They also make a new prediction that the indirect effect results from the normalization of synaptic efficacies during this process. The model thus provides a unified computational explanation of self-organization and both the direct and indirect tilt aftereffect in the primary visual cortex.

Adaptation, Ocular↗
PubMed2004

Inter-joint coupling strategy during adaptation to novel viscous loads in human arm movement.

When arm movements are perturbed by a load, how does the nervous system adjust control signals to reduce error? While it has been shown that the nervous system is capable of compensating for the effects of limb dynamics and external forces, the strategies used to adapt to novel loads are not well understood. We used a robotic exoskeleton [kinesiological instrument for normal and altered reaching movements (KINARM)] to apply novel loads to the arm during single-joint elbow flexions in the horizontal plane (shoulder rotation was allowed). Loads varied in magnitude with the instantaneous velocity of elbow flexion, and were applied to the shoulder in experiment 1 (interaction loads) and the elbow in experiment 2 (direct loads). Initial exposure to both interaction and direct loads resulted in perturbations at both joints, even though the load was applied to only a single joint. Subjects tended to correct for the kinematics of the elbow joint while perturbations at the shoulder persisted. Electromyograms (EMGs) and computed muscle torque showed that subjects modified muscle activity at the elbow to reduce elbow positional deviations. Shoulder muscle activity was also modified; however, these changes were always in the same direction as those at the elbow. Current models of motor control based on inverse-dynamics calculations and force-control, as well as models based on positional control, predict an uncoupling of shoulder and elbow muscle torques for adaptation to these loads. In contrast, subjects in this study adopted a simple strategy of modulating the natural coupling that exists between elbow and shoulder muscle torque during single-joint elbow movements.

Adaptation, Physiological↗
PubMed2005

A time-series prediction approach for feature extraction in a brain-computer interface.

This paper presents a feature extraction procedure (FEP) for a brain-computer interface (BCI) application where features are extracted from the electroencephalogram (EEG) recorded from subjects performing right and left motor imagery. Two neural networks (NNs) are trained to perform one-step-ahead predictions for the EEG time-series data, where one NN is trained on right motor imagery and the other on left motor imagery. Features are derived from the power (mean squared) of the prediction error or the power of the predicted signals. All features are calculated from a window through which all predicted signals pass. Separability of features is achieved due to the morphological differences of the EEG signals and each NNs specialization to the type of data on which it is trained. Linear discriminant analysis (LDA) is used for classification. This FEP is tested on three subjects off-line and classification accuracy (CA) rates range between 88% and 98%. The approach compares favorably to a well-known adaptive autoregressive (AAR) FEP and also a linear AAR model based prediction approach.

Algorithms↗
PubMed2005

Resurrecting the ancestral enzymatic role of a modulatory subunit.

In the post-genomic era, functional prediction of genes is largely based on sequence similarity searches, but sometimes the homologues bear different roles because of evolutionary adaptations. For instance, the existence of enzyme and non-enzyme homologues poses a difficult case for function prediction and the extent of this phenomenon is just starting to be surveyed. Different evolutionary paths are theoretically possible for the loss or acquisition of enzyme function. Here we studied the ancestral role of a model non-catalytic modulatory subunit. With a rational approach, we "resurrected" enzymatic activity from that subunit to experimentally prove that it derived from a catalytic ancestor. We show that this protein (L subunit ADP-glucose pyrophosphorylase) evolved to have a regulatory role, losing catalytic residues more than 130 million years ago, but preserving, possibly as a by-product, the substrate site architecture. Inactivation of catalytic subunits could be the consequence of a general evolutionary strategy to explore new regulatory roles in hetero-oligomers.

Adenosine Diphosphate↗
PubMed2005

Predicting the effect of various ISA penetration grades on pedestrian safety by simulation.

Intelligent speed adaption (ISA) is one type of vehicle-based intelligent transportation systems (ITS), which warns and regulates driving speed according to the speed limits of the roads. Early field studies showed that ISA could reduce general mean speed levels and their variances in different road environments. This paper studies the effects of various ISA penetration grades on pedestrian safety in a single lane road. A microscopic traffic simulation tool, TPMA, was further developed and used to implement different ISA penetration grades. Momentary spot speed and traffic flow data are first logged in the traffic simulation for later prediction of pedestrian safety. Then a hypothetical vehicle-pedestrian collision model is extended from early researches in order to estimate two safety indicators: probability of collision, and risk of death. Finally, Monte Carlo method is applied iteratively to compute those safety indices. The computational result shows that raising ISA penetration in traffic flow will reduce both the probability of mid-block collision between vehicle and pedestrian and the risk of death in the collision accidents. Furthermore, the decrease of the risk of death will be more prominent than that of the collision probability according to this method.

Acceleration↗
PubMedDate not supplied

The role of loading memory in bone adaptation simulations.

The concept that bone responds to a time-averaged value of its current mechanical loading forms the basis for many computational bone adaptation algorithms. Some mathematical formulations have incorporated a quantification of the loading experienced during a single "average" day and thus implicitly assume that bone responds abruptly to changes in its loading history. To better reflect the time delays inherent in bone cell recruitment and activation processes, we included a fading memory of past loading. Implementing an exponentially fading memory with time constants of 5, 20, and 100 days, we simulated bone adaptations to abrupt and gradual changes in mechanical loading. Both an idealized single degree-of-freedom model and a finite element model of the proximal femur were studied. A time constant of 5 days produced time-dependent density changes that were negligibly different from those of the standard approach without memory. Models with higher time constants produced significant transient time lags (up to 8.1% difference) in the predicted short-term (3 months) bone density changes. A time constant of 100 days produced overshoots (by approximately 1%) of the eventual steady-state. All models predicted comparable long-term (after several years) steady-state adaptations. Future experimental analyses will be necessary to better determine appropriate fading memory time constants for bone under various loading conditions.

Adaptation, Physiological↗
PubMed1987

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications.

A simple, effective measure of synonymous codon usage bias, the Codon Adaptation Index, is detailed. The index uses a reference set of highly expressed genes from a species to assess the relative merits of each codon, and a score for a gene is calculated from the frequency of use of all codons in that gene. The index assesses the extent to which selection has been effective in moulding the pattern of codon usage. In that respect it is useful for predicting the level of expression of a gene, for assessing the adaptation of viral genes to their hosts, and for making comparisons of codon usage in different organisms. The index may also give an approximate indication of the likely success of heterologous gene expression.

Animals↗
PubMed2006

Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter.

Members of the Bacteroidetes, formerly known as the Cytophaga-Flavobacteria-Bacteroides (CFB) phylum, are among the major taxa of marine heterotrophic bacterioplankton frequently found on macroscopic organic matter particles (marine snow). In addition, they have been shown to also represent a significant part of free-living microbial assemblages in nutrient-rich microenvironments. Their abundance and distribution pattern in combination with enzymatic activity studies has led to the notion that organisms of this group are specialists for degradation of high molecular weight compounds in both the dissolved and particulate fraction of the marine organic matter pool, implying a major role of Bacteroidetes in the marine carbon cycle. Despite their ecological importance, comprehensive molecular data on organisms of this group have been scarce so far. Here we report on the first whole genome analysis of a marine Bacteroidetes representative, 'Gramella forsetii' KT0803. Functional analysis of the predicted proteome disclosed several traits which in joint consideration suggest a clear adaptation of this marine Bacteroidetes representative to the degradation of high molecular weight organic matter, such as a substantial suite of genes encoding hydrolytic enzymes, a predicted preference for polymeric carbon sources and a distinct capability for surface adhesion.

Adaptation, Physiological↗
PubMed2007

Do Swiftlets have an ear for echolocation? The functional morphology of Swiftlets' middle ears.

The Oilbird and many Swiftlet species are unique among birds for their ability to echolocate. Echolocaters may benefit from improved hearing sensitivity. Therefore, morphological adaptations to echolocation might be present in echolocating birds' middle ears. We studied the functional morphology of the tympano-ossicular chain of seven specimens of four echolocating Swiftlet species and one specimen each of five non-echolocating species. Three dimensional (3D) reconstructions were made from micro-Computer-Tomographic (muCT) scans. The reconstructions were used in functional morphological analyses and model calculations. A two dimensional (2D) rigid rod model with fixed rotational axes was developed to study footplate output-amplitudes and to describe how changes in the arrangement of the tympano-ossicular chain affect its function. A 3D finite element model was used to predict ossicular-chain movement and to investigate the justification of the 2D approach. No morphological adaptations towards echolocation were found in the middle-ear lever system or in the mass impedance of the middle ear. A wide range of middle-ear configurations result in maximum output-amplitudes and all investigated species are congruent with these predicted best configurations. Echolocation is unlikely to depend on adaptations in the middle ear tympano-ossicular chain.

Animals↗
PubMed2002

Age, smoking, and negative affectivity as predictors of sleep patterns among shiftworkers in two environments.

Although adaptation to shiftwork has been widely studied, little is known about how individual and environmental factors combine to influence sleep among shiftworkers. This study examined age, smoking, and negative affectivity (NA) as predictors of sleep duration and quality for 3 work phases (day shifts, DS; night shifts, NS; and leave periods, LP). Data were collected from personnel working 12-hr shifts, onshore (n = 330) or offshore (n = 456). Individual factors predicted patterns of sleep measures across the DS, NS, and LP phases onshore, but not offshore; onshore, work phase interacted with smoking and with age to predict sleep duration and with NA to predict sleep quality. The role of the offshore environment in shiftwork adaptation is discussed.

Adolescent↗
PubMed2005

Spatial properties of central vestibular neurons of monkeys after bilateral lateral canal nerve section.

Thirty-seven neurons were recorded in the superior vestibular nucleus (SVN) of two cynomolgus monkeys 1-2 yr after bilateral lateral canal nerve section to test whether the central neurons had spatially adapted for the loss of lateral canal input. The absence of lateral canal function was verified with eye movement recordings. The relation of unit activity to the vertical canals was determined by oscillating the animals about a horizontal axis with the head in various orientations relative to the axis of rotation. Animals were also oscillated about a vertical axis while upright or tilted in pitch. In the second test, the vertical canals are maximally activated when the animals are tilted back about -50 degrees from the spatial upright and the lateral canals when the animals are tilted forward about 30 degrees . We reasoned that if central compensation occurred, the head orientation at which the response of the vertical canal-related neurons was maximal should be shifted toward the plane of the lateral canals. No lateral canal-related units were found after nerve section, and vertical canal-related units were found only in SVN not in the rostral medial vestibular nucleus. SVN canal-related units were maximally activated when the head was tilted back at -47 +/- 17 and -50 +/- 12 degrees (means +/- SD) in the two animals, close to the predicted orientation of the vertical canals. This indicated that spatial adaptation of vertical canal-related vestibular neurons had not occurred. There were substantial neck and/or otolith-related inputs activating the vertical canal-related neurons in the nerve-sectioned animals, which could have contributed to oculomotor compensation after nerve section.

Action Potentials↗
PubMed1975

Allocation of attention and the locus of adaptation to displaced vision.

Experimental subjects were exposed to prism-induced visual displacement of a target whose location was correctly given by proprioceptive-kinesthetic information. Control subjects were exposed alternately to visual displacement or proprioceptive-kinesthetic location information. During the adaptation period, experimental subjects in the visual attention condition performed a localization task that directed them to attend selectively to the visual modality; experimental subjects in the proprioceptive attention condition attended selectively to the proprioceptive modaltiy; control subjects performed the task on the basis of the available modality. Measures of adaptation and aftereffect were secured separately in each of the two modalities. These confirmed the predictions that the shifts in the experimental conditions would be confirmed to localization tests dependent on the unattended modality and that control subjects would not exhibit adaptation. We proposed that allocation of attention determines situational dominance and that dominance determines the locus of adaptation. The findings were compared to those reported by Canon (1970) and were applied to a reassessment of the "visual capture" phenomenon.

Adaptation, Physiological↗
PubMed2005

Improved prediction of the collagen fiber architecture in the aortic heart valve.

Living tissues show an adaptive response to mechanical loading by changing their internal structure and morphology. Understanding this response is essential for successful tissue engineering of load-bearing structures, such as the aortic valve. In this study, mechanically induced remodeling of the collagen architecture in the aortic valve was investigated. It was hypothesized that, in uniaxially loaded regions, the fibers aligned with the tensile principal stretch direction. For biaxial loading conditions, on the other hand, it was assumed that the collagen fibers aligned with directions situated between the principal stretch directions. This hypothesis has already been applied successfully to study collagen remodeling in arteries. The predicted fiber architecture represented a branching network and resembled the macroscopically visible collagen bundles in the native leaflet. In addition, the complex biaxial mechanical behavior of the native valve could be simulated qualitatively with the predicted fiber directions. The results of the present model might be used to gain further insight into the response of tissue engineered constructs during mechanical conditioning.

Animals↗
PubMed1988

A prospective investigation of suicidal ideation in college students: a test of a model.

In order to test the predictive validity of a stress--vulnerability model of suicide ideation and behavior, a longitudinal study was conducted with college undergraduates. Based on previous research (Bonner & Rich, 1987; Rich & Bonner, 1987a), measures of social/emotional alienation, adaptive resources for living, and cognitive rigidity were taken at the beginning of the semester and combined to develop a vulnerability score. Then, at midterm, measures of midterm stress and cumulative negative life stress were obtained from the same subjects. It was hypothesized that the vulnerability factor would interact with midterm and negative life stress to predict suicide ideation. Instead of an interactive model, a linear, compensatory model of suicide ideation was found. The combination of alienation, deficient adaptive resources, and life stress best predicted ideation scores. Implications for research and theory are noted.

Adaptation, Psychological↗