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PubMed2006

Fine-scale genetic structure among genetic individuals of the clone-forming monotypic genus Echinosophora koreensis (Fabaceae).

BACKGROUND AND AIMS: For rare endemics or endangered plant species that reproduce both sexually and vegetatively it is critical to understand the extent of clonality because assessment of clonal extent and distribution has important ecological and evolutionary consequences with conservation implications. A survey was undertaken to understand clonal effects on fine-scale genetic structure (FSGS) in two populations (one from a disturbed and the other from an undisturbed locality) of Echinosophora koreensis, an endangered small shrub belonging to a monotypic genus in central Korea that reproduces both sexually and vegetatively via rhizomes. METHODS: Using inter-simple sequence repeats (ISSRs) as genetic markers, the spatial distribution of individuals was evaluated using Ripley's L(d)-statistics and quantified the spatial scale of clonal spread and spatial distribution of ISSR genotypes using spatial autocorrelation analysis techniques (join-count statistics and kinship coefficient, F(ij)) for total samples and samples excluding clones. KEY RESULTS: A high degree of differentiation between populations was observed (phi(ST(g)) = 0.184, P < 0.001). Ripley's L(d)-statistics revealed a near random distribution of individuals in a disturbed population, whereas significant aggregation of individuals was found in an undisturbed site. The join-count statistics revealed that most clones significantly aggregate at < or = 6-m interplant distance. The Sp statistic reflecting patterns of correlograms revealed a strong pattern of FSGS for all four data sets (Sp = 0.072-0.154), but these patterns were not significantly different from each other. At small interplant distances (< or = 2 m), however, jackknifed 95% CIs revealed that the total samples exhibited significantly higher F(ij) values than the same samples excluding clones. CONCLUSION: The strong FSGS from genets is consistent with two biological and ecological traits of E. koreensis: bee-pollination and limited seed dispersal. Furthermore, potential clone mates over repeated generations would contribute to the observed high F(ij) values among genets at short distance. To ensure long-term ex situ genetic variability of the endangered E. koreensis, individuals located at distances of 10-12 m should be collected across entire populations of E. koreensis.

Conservation of Natural Resources↗
PubMed2006

Temporal and spatial dynamics of blocking and ripening effects on bacterial transport through a porous system: a possible explanation for CFT deviation.

The studies on transport of particles across porous systems are based on the Colloid Filtration Theory (CFT). According to CFT, the collision efficiency is constant along the system length [J.N. Ryan, M. Elimelech, Colloids Surf. A: Physicochem. Eng. Aspects 107 (1996) 1-56]. Decreasing values of collision efficiency have been reported, a phenomenon that has been interpreted as a deviation from the CFT [X. Li, T.D. Scheibe, W.P. Johnson, Environ. Sci. Technol. 38 (2004) 5616-5625; N. Tufenkji, J.A. Redman, M. Elimelech, Environ. Sci. Technol. 37 (2003) 616-623; N. Tufenkji, M. Elimelech, Langmuir 20 (2004) 10818-10828; N. Tufenkji, M. Elimelech, Langmuir 21 (2005) 841-852]. This paper presents data on transport of Bacillus megaterium spores through quartz sand columns. The occurrence of consecutive phases of increase and decrease of the values of C/C(0), the effluent spore concentration expressed as a fraction of the influent spore concentration, is reported. These patterns of change in C/C(0) were interpreted as the result of the concomitant occurrence of blocking and ripening, the prevalence of these phenomena in different moments of the experiment, and the spatial distribution of the prevalence of blocking and ripening effects along the porous system. It is argued that this spatial distribution in the predominance of blocking and ripening, what leads to the intensification of ripening at the entrance of the porous system, might be a possible explanation for the reported deviation from the CFT for experimental conditions where ripening and blocking take place.

Bacillus megaterium↗
PubMed1989

Intraurban physician location. New empirical evidence.

This article addresses an issue of continuing interest to social scientists: the spatial distribution of physician services. Although there have been many studies of physician distribution across urban areas and states, there have been few studies, none recent, of physician distribution within urban areas. The paper begins with a review of studies that examine the determinants of intraurban physician location. Following the review the paper offers new estimates of the determinants of intraurban physician location using a maximum-likelihood procedure based on the Poisson distribution. Contrary to previous studies, the results imply that market forces do play a significant role in the spatial distribution of physicians.

Humans↗
PubMed2006

Application of WetSpa model for assessing land use impacts on floods in the Margecany-Hornad watershed, Slovakia.

The spatially distributed hydrologic model WetSpa combines elevation, soil and land use data within GIS, to predict flood hydrographs and spatial distribution of hydrologic characteristics in a watershed. The model is applied to the Margecany-Hornad river basin (1131 km2) in Slovakia. Daily hydrometeorological data from 1991-2000, including precipitation data from nine stations, temperature data from four stations and evaporation data measured at one station are used as input to the model. Three base maps, i.e. DEM, land use and soil type are prepared in GIS form, using 100 x 100 m cell size. Results of the simulations show good agreement between calculated and measured hydrographs. The model predicts the daily/hourly hydrographs with 75-80% accuracy according to the Nash-Sutcliff criteria. For assessing the impact of land use changes on floods, the calibrated model is applied for a reforestation scenario, which considers a 50% increase of forest areas. The model results show that the reforestation scenario decreases the peak discharge by 12%. Investigation of peak discharges from the whole simulation period, shows that the scenario results are reduced by 18% on average, while for small discharges the reduction is even about 34%. The time to peak of the simulated hydrograph of the reforestation scenario is 20 hours longer than for the present land use.

Disasters↗
PubMed2005

From wealth to health: modelling the distribution of income per capita at the sub-national level using night-time light imagery.

BACKGROUND: Sub-national figures providing information about the wealth of the population are useful in defining the spatial distribution of both economic activity and poverty within any given country. Furthermore, since several health indicators such as life expectancy are highly correlated with household welfare, sub-national figures allow for the estimation of the distribution of these health indicators within countries when direct measurement is difficult.We have developed methods that utilize spatially distributed information, including night-time light imagery and population to model the distribution of income per capita, as a proxy for wealth, at the country and sub-national level to support the estimation of the distribution of correlated health indicators. RESULTS: A first set of analysis are performed in order to propose a new global model for the prediction of income per capita at the country level. A second set of analysis is then confirming the possibility to transfer the country level approach to the sub-national level on a country by country basis before underlining the difficulties to create a global or regional models for the extrapolation of sub-national figures when no country data set exists. CONCLUSIONS: The methods described provide promising results for the extrapolation of national and sub-national income per capita figures. These results are then discussed in order to evaluate if the proposed methods could not represent an alternative approach for the generation of consistent country specific and/or global poverty maps disaggregated to some sub-national level.

Journal Article↗
PubMed1993

Membrane currents evoked by afferent fiber stimulation in rat piriform cortex. II. Analysis with a system model.

1. The detailed visualization of membrane currents over time and depth provided by current source-density (CSD) analysis was used as the basis for development of a system model that reproduces the response of piriform cortex to afferent fiber stimulation. This model has allowed the testing and substantial revision of previous hypotheses concerning the sequence of neuronal events underlying this response, has enabled net membrane currents visualized by CSD analysis to be separated into active and passive components, and has generated predictions for important axonal and synaptic parameters as well as for the behavior of piriform cortex as a system. 2. The model was developed in three steps. Activity in excitatory fiber systems was first represented with continuous distributions. The "population conductances" due to the activation of excitatory fiber systems were then computed from the distribution of action-potential arrival times and the conductance waveform for excitatory synapses. Finally, these temporally dispersed excitatory conductances and locally mediated inhibitory conductances were introduced at appropriate locations on a compartmentalized cable that simulated the passive response of the pyramidal cell population. 3. After the simulation of membrane currents at one site, all parameters in the model were fixed so that it could be used to predict the variation in the time course of membrane currents at additional recording sites; comparison with the results of CSD analysis at these sites provided the primary validation of the model. Additional validation included the simulation of membrane potentials derived by intracellular recording, including the effects of manipulating somatic potential with current injection. 4. Several conclusions have emerged from the mathematical description of activity in fiber systems. Propagation of activity in both afferent and association (corticocortical) fiber systems is "dispersive" as a result of a wide spectrum of axon conduction velocities. The characteristically different time courses of afferent and association fiber-mediated responses are largely determined by the focal, shock-evoked origin of the volley in afferent fibers as opposed to the spatially distributed disynaptic origin of activity in association fibers. Conduction velocity distributions for afferent and association fiber systems are skewed and can be approximated with lognormal distributions. 5. General solutions, which relate an arbitrary conduction velocity distribution to arrival time and spatial distributions of action potentials, were used to generate specific solutions describing the effects of dispersive propagation.(ABSTRACT TRUNCATED AT 400 WORDS)

Afferent Pathways↗
PubMed1999

Age effects on random-array letter cancellation tests.

OBJECTIVE: This study was designed to determine whether young and older adults differ in the spatial pattern of omission errors on random-array letter cancellation tasks. BACKGROUND: Aging is associated with declines in the speed or efficiency of visual information processing. It is unclear whether the spatial characteristics of visual exploration also change with aging. METHOD: Thirty young adults and 30 older adults each completed 21 random-array cancellation forms. Forms were systematically varied in paper size, target-to-distractor ratio, stimulus density, and target number. RESULTS: The spatial distribution of errors was not random for older adults. Younger adults expressed a trend toward nonrandom error location, but the spatial distribution did not differ between groups. There was also a strong trend toward more errors per subject in the older group. Older subjects required more time for task completion. CONCLUSIONS: The findings are consistent with a generalized age-related decline in the speed or efficiency of visual search, but the spatial properties of directed attention do not appear to be different between young and older adults.

Adolescent↗
PubMed1989

Regulation of pea epicotyl elongation by blue light : fluence-response relationships and growth distribution.

Irradiation with blue light causes a rapid decrease in stem elongation in Pisum sativum. Growing plants under continuous red light allowed us to study the fluence dependence and spatial distribution of blue-induced growth effects without interference from large changes in the ratio of the far-red absorbing form of phytochrome to total phytochrome. The magnitude of the inhibition generated by a 30-second pulse of blue light was linearly related to the log of the fluence applied over two orders of magnitude. Reciprocity held for irradiations with a pulse length shorter than the lag time for the response. The spatial distribution of inhibition was studied by marking the growing zone and photographing the stem at 10-minute intervals before, during, and after a 1-hour exposure to blue light. The region just below the hook does not undergo any perceptible change in growth rate while growth is nearly 100% inhibited in the base of the third internode.

Journal Article↗
PubMed1995

Structural and molecular determinants of intercellular coupling in cardiac myocytes.

Electrical activation of the heart requires intercellular transfer of current through gap junctions connecting individual cardiac myocytes. Using a combination of light and electron microscopic techniques and molecular approaches, we have characterized the number, size, and spatial distribution of intercellular connections at gap junctions in cardiac myocytes and have also cloned, sequenced, and elucidated the subcellular distribution of three physiologically distinct gap junction channel proteins. In this review, we present evidence to suggest that the spatial distribution of myocyte interconnections and the molecular composition of gap junction channels may confer distinct conduction properties on specific tissues of the mammalian heart such as atrial and ventricular myocardium, and the nodes and bundles of the cardiac conduction system.

Animals↗
PubMed1994

8-12 Hz rhythmic oscillations in human motor cortex during two-dimensional arm movements: evidence for representation of kinematic parameters.

Direct cortical recordings were taken from 12 patients with implanted subdural electrode arrays during performance of a 2-dimensional, multi-joint, visually guided arm movement task. Task-related changes in the amplitude of the motor cortex 8-12 Hz surface local field oscillations were evaluated for the encoding of direction and amplitude of movement in the 6 patients in whom no epileptogenic or ECoG background abnormalities were detected over the motor-sensory cortical areas under the recording electrode array. The topography, time of onset and duration of these responses were evaluated in the context of motor cortex somatotopy, as defined by cortical stimulation delivered through the electrode array. Multi-joint arm movements were accompanied by a decrease in the power of the 8-12 Hz frequency components of the ECoG signal. These power changes were spatially distributed over the upper extremity, motor-sensory representation. Movement amplitude influenced the magnitude, duration, and extent of the spatial distribution of ECoG power changes in the 8-12 Hz band. These effects occurred predominantly over cortical areas corresponding to the upper extremity motor-sensory representations. Direction of movement had a weaker influence on the 8-12 Hz frequency components of the ECoG over the upper extremity motor-sensory representations, but influenced the patterns of 8-12 Hz ECoG response on adjacent cortical regions. These results show that the amplitude of surface electrical oscillations generated over the rolandic cortex are correlated with the kinematics of multi-joint arm movements. These changes in the ECoG signal appear to reflect shifts in the functional state of neuronal ensembles involved in the initiation and execution of motor tasks.

Adult↗
PubMed2004

Processes leading to a spatial aggregation of Echinococcus multilocularis in its natural intermediate host Microtus arvalis.

The small fox tapeworm (Echinococcus multilocularis) shows a heterogeneous spatial distribution in the intermediate host (Microtus arvalis). To identify the ecological processes responsible for this heterogeneity, we developed a spatially explicit simulation model. The model combines individual-based (foxes, Vulpes vulpes) and grid-based (voles) techniques to simulate the infections in both intermediate and definite host. If host populations are homogeneously mixed, the model reproduces field data for parasite prevalence only for a limited number of parameter combinations. As ecological parameters inevitably vary to a certain degree, we discarded the homogeneous mixing model as insufficient to gain insight into the ecology of the fox tapeworm cycle. We analysed five different model scenarios, each focussing on an ecological process that might be responsible for the heterogeneous spatial distribution of E. mulitlocularis in the intermediate host. Field studies revealed that the prevalence ratio between intermediate and definite host remains stable over a wide range of ecological conditions. Thus, by varying the parameters in simulation experiments, we used the robustness of the agreement between field data and model output as quality criterion for the five scenarios. Only one of the five scenarios was found to reproduce the prevalence ratio over a sufficient range of parameter combinations. In the accentuated scenario most tapeworm eggs die due to bad environmental conditions before they cause infections in the intermediate host. This scenario is supported by the known sensitivity of tapeworm eggs to high temperatures and dry conditions. The identified process is likely to lead to a heterogeneous availability of infective eggs and thus to a clumped distribution of infected intermediate hosts. In conclusion, areas with humid conditions and low temperatures must be pointed out as high risk areas for human exposure to E. multilocularis eggs as well.

Animals↗
PubMed1994

Oxygen diffusion and reaction kinetics in the photodynamic therapy of multicell tumour spheroids.

Effects of oxygen diffusion and reaction kinetics in photodynamic therapy are considered in the context of a multicell tumour spheroid model. Steady-state measurements of oxygen made with a Clark-style microelectrode (4 microm diameter tip) enable us to determine the rate of metabolic oxygen consumption and the oxygen diffusion coefficient in 500 microm diameter EMT6/Ro spheroids. These values are 5.77 micromol 1(-1) s(-1) and 1460 microm2 s(-1), respectively. Time-dependent electrode measurements of oxygen concentration during laser irradiation of individual Photofrin-sensitized spheroids are fitted to numerical solutions of a pair of diffusion-with-reaction equations. The analysis yields the rate of photodynamic oxygen consumption and a parameter that governs the oxygen sensitivity of photodynamic therapy. These experimentally derived quantities are used to calculate the temporal and spatial distributions of oxygen and the rate of oxygen consumption in a spheroid during irradiation at several fluence rates. The spatial distribution of photodynamic oxygen consumption is strongly fluence rate dependent. Using the experimental and theoretical results developed in this report, previously published survival data are analysed. The analysis indicates that the threshold dose of reacting singlet oxygen in the EMT6/Ro spheroid is 323 +/- 38 micromol 1(-1) (mean +/- SEM).

Animals↗
PubMed2001

Charge migration in DNA: ion-gated transport.

Electron hole (radical cation) migration in DNA, where the quantum transport of an injected charge is gated in a correlated manner by the thermal motions of the hydrated counterions, is described here. Classical molecular dynamics simulations in conjunction with large-scale first-principles electronic structure calculations reveal that different counterion configurations lead to formation of states characterized by varying spatial distributions and degrees of charge localization. Stochastic dynamic fluctuations between such ionic configurations can induce correlated changes in the spatial distribution of the hole, with concomitant transport along the DNA double helix. Comparative ultraviolet light-induced cleavage experiments on native B DNA oligomers and on ones modified to contain counterion (Na(+))-starved bridges between damage-susceptible hole-trapping sites called GG steps show in the latter a reduction in damage at the distal step. This reduction indicates a reduced mobility of the hole across the modified bridge as predicted theoretically.

Cations↗
PubMed1999

Secondary phase distribution analysis via finite body tessellation

The concept of a Dirichlet tessellation has been extended to that of a 'finite body' tessellation to provide a more meaningful description of the spatial distribution of non-spherical secondary phase bodies on two-dimensional sections. A finite body tessellation consists of a network of cells constructed from the interfaces of each individual secondary phase body such that every point within a cell is closer to the corresponding body than to any other. Spatial distribution related cell characteristics derived from Dirichlet tessellations have been extended to finite body tessellations. Quantitative comparisons between the two methods indicate that finite body tessellation measurements are more physically representative as well as more sensitive to local distribution characteristics of secondary phases. To reflect the potential application of finite body tessellations, a methodology is described for analysing the effects of particle distribution and morphology on short crack behaviour in particulate reinforced metal matrix composites.

Journal Article↗
PubMedDate not supplied

Descriptive spatial analysis of BSE in western France.

The spatial heterogeneity of Bovine Spongiform Encephalopathy (BSE) was analysed on the 84 cases confirmed in western France (WF) between August and December 2000, when both the Mandatory Reporting System and an active surveillance on cattle at risk were running. Ninety-four percent of these cases were born between June 1993 and June 1996, and we analysed the location at birth. One disease mapping and two clustering methods (Scan of Kulldorff and the method of Besag and Newell) were used. In order to attenuate the contrasts artificially created by the standard disease mapping method (over-dispersion), we estimated the Standard Incidence Ratio (SIR) with a Bayesian method (Poisson-Gamma model) allowing a smoothing of the estimators. The geographical location of interest was the "canton", that divided the total area into 526 geographical units. The background population (2.6 million cattle) was obtained from the Agricultural Census 2000. We tested the hypothesis of a homogenous spatial distribution of the BSE risk where the expected number of BSE cases per unit area was obtained by applying the overall BSE rate in WF to each "canton", standardised on the type of breed, dairy versus beef suckler. The SIR ranged from 0.80 to 2.18 and the spatial distribution of BSE cases was significantly heterogeneous. Two spatial clusters were detected with the spatial scan statistics of Kulldorff and the method of Besag and Newell (18 to 20 observed BSE-cases per cluster with a radius of 45 km) centred on the "département" of Côtes-d'Armor and Mayenne. Another cluster was detected with the method of Besag and Newell (9 observed BSE-cases) in the "département" of Finistère. The results proved that the risk of BSE is linked to the geographical location in the area of the study.

Animals↗
PubMed1981

Reliability of absolute and relative measurement of total body nitrogen by the 14N(n, 2n)13N reaction.

Measurements of total body nitrogen by in vivo neutron activation analysis using the 14N(n, 2n)13N reaction, may conveniently be calibrated using phantoms in which nitrogen is uniformly distributed. However, the response of the method varies considerably in the thickest body sections and in order to validate the calibration, it is necessary also to consider the spatial distributions both of nitrogen and of the major interfering element, oxygen. The effects of these spatial distributions have been calculated for the experimental conditions obtained at the East Kilbride facility for total body in vivo neutron activation analysis. The response for total body nitrogen was found to depend strongly on body weight (in the rang e 40 to 100 kg) but only weakly on total body content of adipose tissue (0 to 65% of body weight). It differed little from the response calculated for the nitrogen distributed uniformly within the body. The calculation was tested successfully against measured changes in the net response for nitrogen resulting from 'homogenisation' of inhomogeneous phantoms.

Body Composition↗
PubMed1996

Neural encoding of shape: responses of cutaneous mechanoreceptors to a wavy surface stroked across the monkey fingerpad.

1. The role of cutaneous mechanoreceptors in the tactile perception of shape was investigated. Objects whose surfaces were shaped as a pattern of smooth, alternating convex and concave cylindrical surfaces of differing radii of curvature were constructed such that there were no discontinuities in the slope of the surface. These "wavy surfaces" were stroked across the fingerpad of the anesthetized monkey and electrophysiological responses of slowly adapting type I mechanoreceptive afferents (SAs) and rapidly adapting type I mechanoreceptive afferents (RAs) were recorded. 2. For both SAs and RAs, each convexity indenting the skin evoked a burst of impulses and each concavity of the same curvature that followed elicited a pause in response. "Spatial event plots" (SEPs) of the occurrence of action potentials as a function of the location of the object on the receptive field were obtained and interpreted as the responses of a spatially distributed population of fibers. With increasing magnitude of curvature (equivalently, decreasing radius of curvature) of convexity, the mean width of the burst in the SEPs for each fiber type (representing the width of a region of skin containing active fibers) decreased and the mean discharge rate during the burst increased. Over a range of velocities of stroking from 1 to 40 mm/s, the number of RAs activated increased with velocity, whereas SAs were active at all velocities. For both SAs and RAs, the burst rates increased with velocity, whereas the widths of the bursts and pauses remained approximately invariant. Thus the spatial measures of burst or pause width provide a robust representation of the size of a feature on the object surface. 3. For a given velocity of stroking, the spatially distributed pattern of averaged discharge rates (spatial rate profile, SRP) provided a representation of the shape of the wavy surface. The distance between neighboring peaks in the SRP for individual RAs and SAs was approximately the same as the distance between the peaks of the wavy surface. The averaged SRP for a population of SAs provided a better representation of shape than that for RAs. Whereas active regions in the SEP can be isomorphic to the two dimensional form of the stimulus "footprint" in contact with the skin surface, the SRP, which in addition encodes the features of the stimulus in the third dimension normal to the skin surface, is not isomorphic to the stimulus shape. 4. When the sizes as well as the shapes of objects are varied, it is hypothesized that a central processing mechanism extracts the invariant property of shape from the slopes of the rising and falling phases of an SRP that has been normalized for overall differences in discharge rates. These differences would be expected to occur with variations in the parameters of stimulation such as compressional force, stroke trajectory, and stroke velocity. It was shown that a common feature of the mean SRP for SAs evoked by each wavy surface convexity, regardless of its radius, was the constancy of the slope from the base to the peak and from the peak to the base. Thus a possible code for the constant curvature of a cylinder is the constancy of the slopes along the rising and declining phases of the triangular-shaped spatial response profile evoked in the SA population by the cylindrical convexity.

Animals↗
PubMed2005

Mucilaginous aggregates in the northern Adriatic in the period 1999-2002: typology and distribution.

The spatial and temporal distributions of different types of visible mucilaginous aggregates were investigated monthly by underwater video cameras in the northern Adriatic (NA) from June 1999 to July 2002. Small aggregates (flocs, macroflocs and stringers) were observed in all seasons with higher values in autumn and winter. Larger aggregates (ribbons, cobwebs, clouds, and false bottoms) formed only during late-spring and summer, particularly in 2000 and 2002, when the seasonal thermohaline stratification was marked. In fact, the process of mucilage formation took place mainly in the upper water column, above the main pycnocline. The spatial distribution shows that higher concentrations of small aggregates occur in the more productive coastal waters. The larger aggregates form or accumulate mainly in coastal waters in the southern part of the NA and in the central part of the Po River delta-Rovinj transect, where a gyre greatly influences the aggregates distribution. The fronts between low salinity coastal waters and high salinity waters of southern origin play an important role for accumulation and aggregation of the mucilage during spring and summer. Most of the aggregates accumulate in correspondence with strong pycnoclines with differences in density anomaly of 2 kg m(-3) or higher. False bottoms formed in correspondence with strong haloclines (DeltaS congruent with 2), while cobwebs and ribbons also occurred when the halocline was less marked (DeltaS<0.5). Meteorological conditions greatly influenced the aggregate formation. Calm weather and weak winds favour aggregation processes, while strong north-easterly winds, causing intense mixing, result in the dispersion of the mucilaginous aggregates, as occurred during the Bora event in July 2000.

Adhesives↗