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[Mathematical model of cardiac action potential and its computer simulations].

Malignant arrhythmias and ventricular fibrillation are generally accepted as one of the major causes of death in cardiovascular diseases. Based on the H-H equations, the mathematical model of the cardiac cell action potential consists of the ion channels, pumps, exchangers and transporters that are closely connected with intra- and extra-cellular ion concentrations, the channel's conditions, nerve transductors and drugs. It can build the link between cell electrophysiology and clinical pathophysiology. By altering the cellular environments the computer simulating study on this kind of model can help us look into the electrophysiological changes of the cardiac tissue and even the whole heart and investigate the mechanisms of the cardiac arrhythmias as well. The components of the model and its computer simulating study are introduced in the paper.

Action Potentials↗

Influence of clomipramine and embolization on the characterization of serotonin uptake in rabbit lung using a new mathematical model.

The kinetic parameters Vmax and Km of the carrier-mediated uptake of serotonin by the lung can be used as an index of endothelial distress. To this purpose we have recently developed a new mathematical model which estimates the kinetic parameters of the double uptake mechanism of serotonin by the rabbit lung (MODEL3, Peeters et al., 1989). The aim of the present study was to evaluate the behavior of this new model after inhibition of the uptake by clomipramine and after reduction of the perfused lung surface with glass bead embolization. Clomipramine administration did not cause distinct hemodynamic alterations, but decreased the serotonin extraction and Vmax/Km (the sum of all first order rate constants). After clomipramine, Vmax1, i.e., the maximal velocity for the first uptake pathway, was significantly decreased, while Km1 tended to increase without reaching significance. The virtual inhibition constant of clomipramine was about 1 microM. Glass bead embolization resulted in large hemodynamic responses, decreased extraction of serotonin and decreased values for Vmax/Km and Vmax1. This is consistent with a diminished vascular surface available for serotonin extraction. We conclude that MODEL3 was able to detect changes in intrinsic uptake capacity and vascular surface area, which were especially reflected in a decrease of Vmax/Km and Vmax1.

Animals↗

A simple mathematical model for the functional peptide/MHC/TCR interactions.

T cell-specific activation requires ligation of TCRs with peptide-MHC complexes on the APC. On the basis of simple chemical and statistical laws, we have constructed a mathematical model to describe this trimolecular interaction between effector and target cells, and we demonstrate its predictive value in the case of in vitro peptide Ag titration. Moreover, this model can generate mechanistic explanations for cellular immunity phenomena like anergy, peripheral tolerance, cell-mediated suppression, TCR antagonism, and thymic selection events.

Amino Acid Sequence↗

Determinants and limits of pressure-preset ventilation: a mathematical model of pressure control.

In recent years, four square-wave modes of pressure-preset mechanical ventilation (PPV)--pressure control, pressure support, inverse ratio, and airway pressure release ventilation--have been introduced to clinical practice. Conceptually, they share important features. Yet, because there remains widespread uncertainty regarding their ventilatory characteristics, efficacy, and appropriate use, the potential range of application is only now being investigated. To construct a unifying mathematical model of PPV, we developed a system of equations for prediction of the major "outcome" variables of PPV--tidal volume, minute ventilation, auto-positive end-expiratory pressure, mean alveolar pressure, and mechanical work--from the primary clinical "inputs" from patient (resistance, compliance) and clinician (applied pressure, frequency, inspiratory time fraction). Our analysis revealed distinct bounding limits for the outcome variables of ventilation and pressure and important implications for their clinical determinants. Although simplifying assumptions were required to enable construction of this mathematical analogue of respiratory system behavior, this model provides a firm conceptual framework for understanding the physiological interactions between PPV and the patients they are intended to help.

Humans↗

Evolutionary ecology in silico: Does mathematical modelling help in understanding 'generic' trends?

Motivated by the results of recent laboratory experiments, as well as many earlier field observations, that evolutionary changes can take place in ecosystems over relatively short ecological time scales, several 'unified' mathematical models of evolutionary ecology have been developed over the last few years with the aim of describing the statistical properties of data related to the evolution of ecosystems. Moreover, because of the availability of sufficiently fast computers, it has become possible to carry out detailed computer simulations of these models. For the sake of completeness and to put these recent developments in perspective, we begin with a brief summary of some older models of ecological phenomena and evolutionary processes. However, the main aim of this article is to review critically these 'unified' models, particularly those published in the physics literature, in simple language that makes the new theories accessible to a wider audience.

Aging↗

[Possibilities for improving fatigue properties of interlocking screws of solid tibial nails. A mathematical model with practical conclusions].

One major problem using small diameter nails in the treatment of tibial fractures is the high rate of fatigue fractures of the locking screws. The objective of this study was to develop a mathematical model for analysis of the stress concentration factor as well as edge fibre stress. This would allow an analysis of the stress peaks caused by the thread of the screw as well as showing ways to increase the fatigue limits of the screws. The main consideration was the fact that a thread can be calculated like a relief notch used in theory of strength to relieve the strain on building materials. The transformation from one notch to multiple notches obviously reduces the stress concentration factor. To improve the fatigue limit of locking screws one has to modify the stress concentration factor or the edge fibre stress on the implant. Absence of a thread at the location where the screw contacts the nail's aperture (where the main load is transmitted to the screw and where the screw therefore usually tends to break) may double the fatigue strength and fatigue limit by avoiding the negative notch effect of the screw's thread. If this option is not possible one has to consider that the optimal threaded screw should have a minimal edge distance, a high notch radius and a minimal edge depth.

Biomechanical Phenomena↗

Mathematical modelling of survival of glioblastoma patients suggests a role for radiotherapy dose escalation and predicts poorer outcome after delay to start treatment.

AIMS: The outcome of patients with glioblastoma (GBM) remains extremely poor. We have developed a mathematical model, using pathological and radiation biology concepts, to assess the detrimental effect of delay to start radiotherapy, the possible benefit from dose escalation, and to extract biological data from clinical data. MATERIALS AND METHODS: Survival data were available for 154 adult patients with GBM treated in our centre with curative intent to a dose of 60 Gy in 30 fractions between 1996 and 2002. Survival data for 129 patients from the 60 Gy arm of the MRC BR02 randomised trial of radiotherapy dose were obtained for comparison. The model generates the equivalent of individual patients with a brain tumour, and produces an explicit outcome, either death or survival. The tumour, assumed to be growing exponentially, causes normal cell damage in the brain, and death occurs when the number of normal brain cells falls below a critical level. The outcome for an individual patient is determined by values of the variables assigned by the model. Parameters for the single patient include tumour doubling time, surviving fraction of tumour cells after each fraction of radiotherapy, and a waiting time from presentation to the start of radiotherapy. A surrogate for performance status is implemented, using a rule that rejects patients whose tumours are too advanced at presentation to be suitable for radical radiotherapy. Values for the parameters that determine individual patient outcome are randomly assigned from a set of probability distributions, using Monte Carlo simulation. The simulation constructs survival results for a population, typically 2000 individuals. The descriptors of the probability distributions that are used to determine the parameters that define the patient characteristics are adjusted to optimise the fit of the modelled population to real clinical data, using a combination of folding polygon and simulated annealing techniques. RESULTS: The model fits the clinical data well. The results suggest that the surviving fraction of tumour cells after a radiation dose of 2 Gy (SF2) does influence patient outcome. The mean in vivo SF2 for the Addenbrooke's data is 0.80, implying that hypoxia is a serious problem in radiotherapy for GBM. The Addenbrooke's data suggest a mean tumour doubling time of 24 days, so that a delay to start radiotherapy would be expected to have an adverse effect. Considering patients by treatment intent, median survival plummets as delay increases, and almost no patients survive long term after a 70-day delay. Radiotherapy dose escalation has an important predicted effect on survival. Assuming that the treatment could be delivered safely, a dose of 74 Gy, given at 2 Gy/fraction, would extend the survival of all patients. The proportion of long-term survivors would increase, from 2.4% with 60 Gy, to 6.4% with 74 Gy. The model can be used to derive gamma50, which has a value of 0.42, lower than the typical value of 1-2. CONCLUSION: Using the model, we have extracted biological information from clinical data. The model could be used to assess the potential benefit, or lack of benefit, from a proposed radiotherapy trial, and to estimate the necessary size. It shows that a single modality is unlikely to achieve a major improvement in long-term survival, although radiotherapy dose escalation should have a role, provided it can be given safely. The model could be extended to include chemotherapy, bio-reductive drugs, or gene therapy.

Brain Neoplasms↗

Genetic algorithms for parameter estimation in mathematical modeling of glucose metabolism.

Direct measurement of hormones secretion and kinetics in glucose metabolism is not feasible in the clinical practice, being highly invasive. As their knowledge is important in the diagnosis of metabolic disorders, thanks to mathematical models based on non-invasive tests, estimation of hormones behaviour is obtained. Unfortunately, traditional model estimation can suffer for convergence problems, and it can be strongly dependent on the parameters initial value. To overcome these limitations, Genetic algorithms (GAs) were tested on a group of 49 subjects. The stochastic nature of GAs allowed overcoming the initialization problem. Moreover, GAs significantly improved the accuracy of fit.

Algorithms↗

Dynamics of macromolecular populations: a mathematical model of the quantitative changes of RNA in the silkgland during the last larval instar.

The quantitative changes of RNA in the silkgland of Bombyx mori have been studied during the last larval instar by using a mathematical model (Volterra-Kostitzin model). This model can be associated with a global mechanism including synthesis and degradative processes. The numerical and statistical methods used for model analysis are described in an appendix. Thus we have compared the accumulation of total RNA (essentially ribosomal) after a treatment (juvenile hormone) and between several strains. The importance of the degradative factor is denoted to explain the observed differences, whereas the synthesis rates remain relatively stable. The last observation may lead us to an interpretation of the molecular effect of a selection to increase silk production : rather than an increase of the productivity of cellular machinery, the degradative process has been limited.

Animals↗

Different growth patterns of a cancer cell population as a function of its starting growth characteristics: analysis by mathematical modelling.

The growth kinetics of a cancer cell population as a function of the total number of cells and the proportion of proliferating and resting cells at the beginning of the growth has been analysed by a mathematical model. The model takes into account the processes of cell division, death and transition from proliferation to rest and backwards. It is shown that a single cell population growing under the same environmental conditions has an extremely broad spectrum of growth patterns. The whole multiplicity of possible growth patterns has been determined by the inherent cellular growth characteristics of the population, while the growth pattern actually realized of the variety of growth curves depends on the total number of cells and the proportion of proliferating and resting cells at the initial moment of growth. The model is shown to provide a good prediction of experimentally measured kinetics of regrowth of tumour cells subcultured after various times of the growth in unfed cultures, and the kinetics of tumour cell growth after severe hypoxia. The role of cell transitions between proliferating and resting stages in the problem of growth control is discussed.

Aerobiosis↗

Mathematical model of beta-cell glucose metabolism and insulin release. I. Glucokinase as glucosensor hypothesis.

To quantitatively test the theory that glucokinase controls the rate of glucose metabolism and therefore the rate of insulin secretion, a minimal mathematical model of glycolysis in the pancreatic beta-cell was developed. The model represents our current hypothesis of how the normal beta-cell transduces the glucose signal. In this report, the model was used to address questions regarding the control strength of transport, hexokinase, glucose-6-phosphatase, and phosphofructokinase in the metabolism of glucose. The hypothesis that fructose 6-phosphate and a protein regulator modulate glucokinase activity was evaluated by simulation analysis, as was the possibility that glucose-6-phosphatase, working in concert with phosphofructokinase, can modulate the glucose-sensing system. It was found that, in the absence of glucose-6-phosphatase, transport, hexokinase, and phosphofructokinase do not greatly influence the rate of glucose metabolism unless their activities are dramatically altered from the measured values. Glucose metabolism was profoundly affected by the activity of glucokinase. However, in the presence of glucose-6-phosphatase, the ratio of glucose-6-phosphatase to phosphofructokinase activities was a very important parameter, and this potential control mechanism deserves more attention. The results further support the notion that glucokinase is indeed the glucosensor of the beta-cell and that modeling the system in toto provides quantitative evaluation needed to interpret the experimental tests of hypotheses.

Animals↗

Effect of pore topology on the remineralization rate of surface-softened enamel and synthetic hydroxyapatite: an experimental comparison and mathematical model.

Experiments with surface-softened synthetic hydroxyapatite show similar remineralization rates as surface-softened human enamel. The mineral gain with respect to time relates to parameters governing the precipitation of mineral in the specimens. A mathematical model regarding the mineral precipitation on the pore surface is fitted to the experimental values. We obtained comparable precipitation rates for apatite and tooth enamel. The geometry of the pores, however, proved to be different: a mostly tube-like pore structure must be attributed to demineralized enamel, while the synthetic hydroxyapatite specimens remineralize like a ramified, crack-like microstructure of pores.

Chi-Square Distribution↗

Mathematical modelling of superoxide generation with the bc1 complex of mitochondria

It is widely believed that direct nonenzymatic semiquinone oxidation with oxygen is one of the sources of superoxide in mitochondria. In the present work we developed a mathematical model of coupled functioning of the bc1 complex and ATP producing processes that allows one to obtain the dependence of superoxide production rate on membrane potential (DeltaPsi). Assuming that electron transfer between hemes of cytochrome b is the main electrogenic step of the Q-cycle, we found that rate of superoxide production increased dramatically with increase in DeltaPsi in the range from 170 to 200 mV. This explains experimental observation of a dramatic decrease in the superoxide production with decrease in DeltaPsi in the range from 200 to 170 mV. Generation of superoxide can be diminished with the inhibition of the electron supply to the Q-cycle, with decrease in external potassium, or increase in external inorganic phosphate level.

Journal Article↗

Alveolar ventilation to perfusion heterogeneity and diffusion impairment in a mathematical model of gas exchange.

This study describes a two-compartment model of pulmonary gas exchange in which alveolar ventilation to perfusion (VA/Q) heterogeneity and impairment of pulmonary diffusing capacity (D) are simultaneously taken into account. The mathematical model uses as input data measurements usually obtained in the lung function laboratory. It consists of two compartments and an anatomical shunt. Each compartment receives fractions of alveolar ventilation and blood flow. Mass balance equations and integration of Fick's law of diffusion are used to compute alveolar and blood O2 and CO2 values compatible with input O2 uptake and CO2 elimination. Two applications are presented. The first is a method to partition O2 and CO2 alveolar-arterial gradients into VA/Q and D components. The technique is evaluated in data of patients with chronic obstructive pulmonary disease (COPD). The second is a theoretical analysis of the effects of blood flow variation in alveolar and blood O2 partial pressures. The results show the importance of simultaneous consideration of D to estimate VA/Q heterogeneity in patients with diffusion impairment. This factor plays an increasing role in gas alveolar-arterial gradients as severity of COPD increases. Association of VA/Q heterogeneity and D may produce an increase of O2 arterial pressure with decreasing QT which would not be observed if only D were considered. We conclude that the presented computer model is a useful tool for description and interpretation of data from COPD patients and for performing theoretical analysis of variables involved in the gas exchange process.

Blood Gas Monitoring, Transcutaneous↗

The nature of the coupling between segmental oscillators of the lamprey spinal generator for locomotion: a mathematical model.

We present a theoretical model which is used to explain the intersegmental coordination of the neural networks responsible for generating locomotion in the isolated spinal cord of lamprey. A simplified mathematical model of a limit cycle oscillator is presented which consists of only a single dependent variable, the phase theta(t). By coupling N such oscillators together we are able to generate stable phase locked motions which correspond to traveling waves in the spinal cord, thus simulating "fictive swimming". We are also able to generate irregular "drifting" motions which are compared to the experimental data obtained from cords with selective surgical lesions.

Animals↗

Failure of programmed cell death and differentiation as causes of tumors: some simple mathematical models.

Most models of tumorigenesis assume that the tumor grows by increased cell division. In these models, it is generally supposed that daughter cells behave as do their parents, and cell numbers have clear potential for exponential growth. We have constructed simple mathematical models of tumorigenesis through failure of programmed cell death (PCD) or differentiation. These models do not assume that descendant cells behave as their parents do. The models predict that exponential growth in cell numbers does sometimes occur, usually when stem cells fail to die or differentiate. At other times, exponential growth does not occur: instead, the number of cells in the population reaches a new, higher equilibrium. This behavior is predicted when fully differentiated cells fail to undergo PCD. When cells of intermediate differentiation fail to die or to differentiate further, the values of growth parameters determine whether growth is exponential or leads to a new equilibrium. The predictions of the model are sensitive to small differences in growth parameters. Failure of PCD and differentiation, leading to a new equilibrium number of cells, may explain many aspects of tumor behavior--for example, early premalignant lesions such as cervical intraepithelial neoplasia, the fact that some tumors very rarely become malignant, the observation of plateaux in the growth of some solid tumors, and, finally, long lag phases of growth until mutations arise that eventually result in exponential growth.

Apoptosis↗

Mathematical model of jet ventilation.

The design of jet ventilators has always been empirical because no theory linked jet geometry, driving pressure, gas density and lung mechanics. A mathematical means has been developed linking these parameters to model jet ventilation. The mathematical model predicts the flow into a physical lung model, but under-estimates flow into the lungs when used to predict the effects of jet ventilation on an animal model at high rates of ventilation. This is attributed to a reduction in compliance with increasing ventilatory frequency.

Animals↗

A mathematical model and mechanism of sublation of dye-surfactant ion complexes.

A study of dye-surfactant ion complexes, bromophenol blue (BB), an anionic dye, with hexadecyl pyridium chloride (HPC) complex, and methane violet (MV), a cationic dye, with sodium docedylbenzensulfonate complex (DBS), was carried out. On the base of the complete transport mechanisms, the Langmuir adsorption and the ion complex equilibrium in aqueous phase, a mathematic model for the ion complex system is obtained with the aid of the 4th Runge-Kuta method and the Mathematic 4.0 and Matlab programs. The effects of many parameters are investigated. A substantial difference is posed between the solvent sublation and solvent extraction. Furthermore, the simulation shows that the model is substantiated with experiments on the solvent sublation of the two kinds of complexes. The results are very different from the models proposed by Wilson et al., which predict very different experimental results.

Journal Article↗