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PubMed2005

Mammalian sleep may have no adaptive advantage over simple activity-rest cycles.

The adaptive value of sleep remains unknown in spite of the intense research performed throughout the last decades. However, few sleep researchers are aware of the difficulties posed by the blind acceptance of an extreme adaptationist viewpoint. Under this philosophy, every anatomical and functional detail present in a living being should have a positive adaptive value, a position that has been considered as rather doubtful. In this report, it is proposed that most of the physiological changes used for mammalian sleep definition could be mere by-products of other true adaptations, such as the ontogenetic and phylogenetic development of the nervous system. As a result, complex mammalian sleep could have no adaptive value over that of the simplest forms of rest-activity cycles present in all living forms. In addition, it is proposed that the absence of adaptive value should, by default, be the first option regarding the function of sleep. Besides, the burden of the proof should be always charged over the proponents of every particular adaptive function. As this proof has not been reached, it is the absence of function for sleep which should be taken for granted.

Activity Cycles↗
PubMed2005

fMR-adaptation reveals a distributed representation of inanimate objects and places in human visual cortex.

The way information about objects is represented in visual cortex remains controversial. It is unclear, for example, whether information is processed in modules, specialized for different categories of objects or whether information is represented in a distributed fashion across a large network of overlapping visual areas. In this study, we used fMR-adaptation to investigate the extent to which 'specialized' regions of visual cortex are involved in representing information about inanimate objects and places. We found adaptation in the object-selective lateral occipital complex (LOC) following repeated presentations of the same inanimate object. However, we also found fMR-adaptation to inanimate objects in fusiform face area (FFA) and the parahippocampal place area (PPA). Furthermore, this adaptation was not affected by changes in the size of the stimulus. In the second part of the experiment, we found adaptation to repeated images of places in the place-selective PPA, which was both size- and viewpoint-invariant. fMR-adaptation to repeated images of places was also observed in the LOC, but not in the FFA. These results suggest that the representation of inanimate objects and places is not restricted to those regions showing maximal responses to these particular categories of objects, but is distributed across human visual cortex and can include 'face-selective' regions such as the FFA.

Adaptation, Psychological↗
PubMed2006

Presynaptic mechanism for slow contrast adaptation in mammalian retinal ganglion cells.

Visual neurons, from retina to cortex, adapt slowly to stimulus contrast. Following a switch from high to low contrast, a neuron rapidly decreases its responsiveness and recovers over 5-20 s. Cortical adaptation arises from an intrinsic cellular mechanism: a sodium-dependent potassium conductance that causes prolonged hyperpolarization. Spiking can drive this mechanism, raising the possibility that the same mechanism exists in retinal ganglion cells. We found that adaptation in ganglion cells corresponds to a slowly recovering afterhyperpolarization (AHP), but, unlike in cortical cells, this AHP is not primarily driven by an intrinsic cellular property: spiking was not sufficient to generate adaptation. Adaptation was strongest following spatial stimuli tuned to presynaptic bipolar cells rather than the ganglion cell; it was driven by a reduced excitatory conductance, and it persisted while blocking GABA and glycine receptors, K((Ca)) channels, or mGluRs. Thus, slow adaptation arises from reduced glutamate release from presynaptic (nonspiking) bipolar cells.

Action Potentials↗
PubMed2006

Visual recalibration and selective adaptation in auditory-visual speech perception: Contrasting build-up courses.

Exposure to incongruent auditory and visual speech produces both visual recalibration and selective adaptation of auditory speech identification. In an earlier study, exposure to an ambiguous auditory utterance (intermediate between /aba/ and /ada/) dubbed onto the video of a face articulating either /aba/ or /ada/, recalibrated the perceived identity of auditory targets in the direction of the visual component, while exposure to congruent non-ambiguous /aba/ or /ada/ pairs created selective adaptation, i.e. a shift of perceived identity in the opposite direction [Bertelson, P., Vroomen, J., & de Gelder, B. (2003). Visual recalibration of auditory speech identification: a McGurk aftereffect. Psychological Science, 14, 592-597]. Here, we examined the build-up course of the after-effects produced by the same two types of bimodal adapters, over a 1-256 range of presentations. The (negative) after-effects of non-ambiguous congruent adapters increased monotonically across that range, while those of ambiguous incongruent adapters followed a curvilinear course, going up and then down with increasing exposure. This pattern is discussed in terms of an asynchronous interaction between recalibration and selective adaptation processes.

Adaptation, Physiological↗
PubMedDate not supplied

Participant-centered adaptations in caregiver trials: strategies for managing confounds.

BACKGROUND: Randomized trials have been criticized for being more protocol than participant-centered, with concerns raised about higher subject attrition and limited generalizability under controlled conditions. Informal caregivers are similar to other participants in community-based trials: many are unlikely to remain in a trial without procedural adaptations to meet some of their needs. PURPOSE: This article discusses design and statistical strategies for tracking potential confounds associated with 3 participant-centered adaptations that may be made in community-based caregiver trials: tailoring multi-component interventions, using interpersonal contacts for participant maintenance, and non-blinding of trial participants. The intent of the article is to initiate dialogue on the seldom-discussed issue of participant-centered adaptations in community-based trials. CONCLUSIONS: Participant-centered adaptations may reduce subject attrition and enhance generalizability, but protocol adaptation can compromise trial integrity. The challenge for investigators is to develop scientifically sound methods for tracking / controlling potential confounds associated with each adaptation.

Adaptation, Psychological↗
PubMed2005

The impact of considering adaptation in health state valuation.

Patients with chronic health conditions often rate their quality of life (QoL) significantly higher than non-patients. One explanation for this discrepancy is that non-patients focus on the negative aspects of the onset of a condition, especially the early difficulties people face when they first experience a debilitating condition, without considering that patients can adapt to it over time. To test this hypothesis, we had 359 people perform person tradeoff (PTO) elicitations in an online survey, varying whether the treatment programs under consideration saved the lives of patients (a) with pre-existing paraplegia; or (b) who would experience new onset of paraplegia. Half of each group completed an "adaptation exercise" which encouraged them to consider their own ability to emotionally adapt to negative events in general and specifically to having paraplegia. The adaptation manipulation increased the value participants placed on pre-existing paraplegia (p=0.03) and on new onset paraplegia (p=0.05), relative to saving healthy lives. Moreover, the adaptation exercise dramatically reduced the differences between evaluations of pre-existing and new onset paraplegia to values within 2% of each other. Our findings suggest that asking non-patients to do an adaptation exercise before giving QoL ratings may help close the gap in ratings between patients and citizen non-patients.

Adaptation, Psychological↗
PubMed2006

Acquired tolerance in cadmium-adapted lung epithelial cells: roles of the c-Jun N-terminal kinase signaling pathway and basal level of metallothionein.

Cadmium-resistant cells were developed in our laboratory with rat lung epithelial cells (LECs) by stepwise exposure of LECs to cadmium chloride from 1 microM to 20 microM after 20 passages. To investigate the Cd-resistant phenotype in a long-term perspective, cadmium-resistant cells adapted to 20 microM cadmium (Cd(R)) were then cultured in the absence of cadmium for various passages [Cd(R)(-n)]. All these adapted cells were significantly protected from cadmium toxicity as compared to parental cadmium-sensitive LECs (Cd(S)). The cadmium-resistant phenotype of adapted cells was relatively stable in the absence of cadmium for as long as 40 passages. Basal mRNA level of metallothionein-1 (MT-1) was dramatically higher in Cd(R) than in Cd(R)(-), which may account for the higher Cd-resistance of Cd(R) than Cd(R)(-). MT-1 mRNA level decreased drastically in Cd(R) after cadmium removal, suggesting that the high basal level of MT-1 in Cd(R) may be only partially responsible for cadmium-resistance. Treatment of cells with high levels of cadmium resulted in decreased phosphorylation of c-Jun N-terminal kinase (JNK1/2) in adapted cells than in sensitive cells and this cadmium-induced JNK activity was blocked by JNK inhibitor II, SP600125. Ro318220, a strong activator of JNK, reverted cadmium-sensitive phenotype in adapted cells. Taken together, our results suggest that during cadmium adaptation, cells develop tolerance to cell death, generally due to perturbation of the JNK signaling pathway and the nonresponsiveness of JNK phosphorylation is critical for the Cd-tolerance in these cells.

Adaptation, Physiological↗
PubMed2005

Adaptive omnivory and species coexistence in tri-trophic food webs.

The commonness of omnivory in natural communities is puzzling, because simple dynamic models of tri-trophic systems with omnivory are prone to species extinction. In particular, the intermediate consumer is frequently excluded by the omnivore at high levels of enrichment. It has been suggested that adaptive foraging by the omnivore may facilitate coexistence, because the intermediate consumer should persist more easily if it is occasionally dropped from the omnivore's diet. We explore theoretically how species permanence in tri-trophic systems is affected if the omnivore forages adaptively according to the "diet rule", i.e., feeds on the less profitable of its two prey species only if the more profitable one is sufficiently rare. We show that, compared to systems where omnivory is fixed, adaptive omnivory may indeed facilitate 3-species persistence. Counter to intuition, however, facilitation of 3-species coexistence requires that the intermediate consumer is a more profitable prey than the basal resource. Consequently, adaptive omnivory does not facilitate persistence of the intermediate consumer but enlarges the persistence region of the omnivore towards parameter space where a fixed omnivore would be excluded by the intermediate consumer. Overall, the positive effect of adaptive omnivory on 3-species persistence is, however, small. Generally, whether omnivory is fixed or adaptive, 3-species permanence is most likely when profitability (=conversion efficiency into omnivores) is low for basal resources and high for intermediate consumers.

Adaptation, Physiological↗
PubMed2026

No receptor-binding domain adaptation detected in within-host H5N1 surveillance of 4,559 US dairy outbreak sequences.

BACKGROUND: The 2024-2026 US H5N1 clade 2.3.4.4b dairy cattle outbreak has been characterised primarily through consensus-level phylogenetics. Whether mammalian-adaptation variants are emerging at sub-consensus frequencies within infected hosts, particularly at the haemagglutinin receptor-binding domain (RBD), remains unknown because no systematic within-host variant analysis of the public sequencing corpus has been performed. METHODS: We conducted a pre-registered, corpus-wide intrahost single-nucleotide variant (iSNV) analysis of all publicly available H5N1 cattle, feline-spillover, and retail-milk sequences on the NCBI Sequence Read Archive (4559 samples across 7 BioProjects). A dual-caller concordance pipeline (iVar + LoFreq) with empirically determined allele frequency (AF) threshold (3%, set via four-criterion validation including synthetic spike-in controls) was applied to an 11-site Tier 1 mammalian-adaptation panel spanning the polymerase complex, haemagglutinin RBD, and accessory proteins. Within-host nucleotide diversity was compared across host categories. RESULTS: The HA RBD sites Q226L and G228S (H3 numbering) showed zero detections across >4300 adequately sequenced samples at all AF thresholds tested (1-5%), despite the pipeline detecting other non-synonymous variants at these exact codon positions (upper 95% CI for prevalence: 0.08%). Seven of eleven adaptation sites carried statistically significant iSNV signals after Bonferroni correction (corrected α = 0.00417), though all at low prevalence (≤2.95%). Genotype stratification showed that most polymerase-site detections reflected genotype structure rather than within-host emergence: the apparent PB2 631 L→M "reversion" was largely the ancestral avian state of the D1.1 genotype (20 of 23 detections), which never acquired the 631L mammalian adaptation, with only two genuine sub-consensus events in the B3.13 background, while consensus-level PB2 701N was a fixed feature of the D1.1 genotype (10 of 14 detections) rather than independent sub-consensus emergence. Cattle exhibited significantly higher within-host nucleotide diversity than feline-spillover samples (π = 1.59 × 10-4 vs 6.11 × 10-5; Kruskal-Wallis p = 6.6 × 10-15), a finding that persisted after depth-matching (p = 4.6 × 10-5); this may reflect prolonged mammary-gland infection, though sampling differences and host biology cannot be excluded. CONCLUSIONS: We did not detect HA receptor-switching adaptation (the acquisition of human-type α2,6 receptor binding via Q226L/G228S) at any tested allele frequency in the US dairy H5N1 outbreak. Sub-consensus mammalian-adaptation signals exist at polymerase-complex sites but at low prevalence, are genotype-structured rather than independently recurrent, and require functional characterisation before informing risk assessment.

Dairy cattle↗
PubMed2003

Effects of light and dark adaptation of rods on specific-hue threshold.

Specific-hue threshold as a function of absolute rod threshold was measured with long-, middle-, and short-wavelength monochromatic test lights presented 17 deg extrafoveally. The measurements were obtained both during the rod phase of long-term dark adaptation and under conditions where the rod receptor system was gradually light adapted from a dark-adapted state by a scotopic background field of increasing retinal illumination. The results show that change in specific-hue threshold with change in absolute rod threshold is not, in general, identical for light and dark adaptation of the rod receptor system. Thus, in the long- and middle-wavelength test regions, the specific-hue threshold could be obtained at higher intensities under the light- as compared to the dark-adaptation condition when absolute rod thresholds were the same. Just the opposite was found for the short-wavelength tests. It is concluded that change in specific-hue threshold with light and dark adaptation of the rod receptor system is not, in general, controlled by the same mechanism.

Color Perception↗
PubMed2006

Viewpoint dependence in adaptation to facial identity.

We produced morph sequences between identities at a variety of viewpoints, ranging from the three quarter leftward facing view, to the three quarter rightward facing view. We measured the strength of identity adaptation as a function of changing test viewpoint whilst keep the adaptation viewpoint constant, and as a function of adaptation viewpoint whilst keeping test viewpoint constant. Our results show a substantial decrease in adaptation as the angle between adaptation and test viewpoint increases. These findings persisted when we introduced controls for low-level retinotopic adaptation, leading us to conclude that our results show strong evidence for viewpoint dependence in the high-level encoding of facial identity. Our findings support models in which identity is encoded, to a large degree, by viewpoint dependent non-retinotopic neural mechanisms. Functional imaging studies suggest the fusiform gyrus as the most likely location for this mechanism.

Adaptation, Physiological↗
PubMed2007

The role of familiarity in three-dimensional view-transferability of face identity adaptation.

Recent studies show that face adaptation effects partially transfer across three-dimensional viewpoint change. Here we investigated whether the degree of adaptation transfer is mediated by experience with a face. We manipulated face familiarity and measured identity aftereffects both within- and across-viewpoint. Familiarity enhanced the overall strength of identity adaptation as well as the degree to which adaptation transferred across-viewpoint change. These findings support the idea that transfer effects in adaptation vary as a function of experience with particular faces, and suggest the use of adaptation as a tool for tracking face representations as they develop.

Adaptation, Physiological↗
PubMed1998

The effect of adapting luminance on the latency of visual search.

Computational models of attentional processing typically view the "attentional spotlight" as a winner-take-all network whose focus can be shifted serially about a display if required. As a result, lateral inhibition is assumed in these models to be an important mechanism involved in visual search. On the basis of this assumption, we predicted that changes in adapting luminance would produce specific changes in search latency functions in virtue of affecting visual inhibition. The results of our first two experiments confirmed these predictions: when search was difficult, and produced reaction time results characteristic of serial processing, there was a main effect of adapting luminance and a significant interaction between adapting luminance and the number of display elements. These effects were both reflected in increases in the slopes and the intercepts of average search latency functions when adapting luminance was decreased. When search was easy, and produced pop out effects characteristic of parallel processing, there were no significant effects of adapting luminance on search latency. The third experiment used adapting luminance to further explore the possibility that arrow junctions are detected preattentively. The results suggested that a visual search for such elements involves a substantial serial component, which weighs against the claim that they are detected by low-level vision.

Adaptation, Ocular↗
PubMed1998

Adaptive functioning following traumatic brain injury and orthopedic injury: a controlled study.

OBJECTIVE: To study adaptive functioning after severe traumatic brain injury (TBI). DESIGN: Case-control study. SETTING: A university hospital and three regional and four community hospitals. SUBJECTS: A consecutive series (n=24) of children age 5 through 14 years who suffered severe TBI were individually matched to subjects who sustained a mild TBI and to a second group who sustained an orthopedic injury with no evidence of TBI. MAIN OUTCOME MEASURES: Standardized adaptive functioning, intellectual, psychiatric, and neuroimaging assessments were conducted on average 2 years after injury. RESULTS: Severe TBI was associated with significantly (p < .05) lower Vineland Adaptive Behavior composite, communication, and socialization standard scores and lower Child Behavior Checklist parent-rated social competence scores compared with children with orthopedic injury. Severe TBI and mild TBI subjects were significantly (p < .05) more impaired than orthopedic subjects on teacher-rated adaptive function. Family functioning, psychiatric disorder in the child, and IQ were significant variables, explaining between 22% and 47% of the variance in adaptive functioning outcomes. CONCLUSIONS: Severe TBI is associated with significant deficits in child adaptive functioning. This association appears to be mediated by family dysfunction, child psychiatric disorder, and intellectual deficits.

Activities of Daily Living↗
PubMed1997

Adaptive regulation of taurine and beta-alanine uptake in a human kidney cell line from the proximal tubule.

1. The underlying mechanisms involved in the adaptive regulation of beta-amino acid uptake in the human proximal tubule were examined by use of an immortalized human embryonic kidney epithelial cell line (IHKE). 2. The results indicated that the adaptive response to maintain whole-body taurine homeostasis occurs predominantly via changes in the activity of the high-affinity taurine transport system by alterations in the uptake capacity and with an unaffected half-saturation constant. An adaptive response was not observed for the structurally related beta-alanine. 3. Only colchicine, which interferes with microtubule organization, was capable of blocking the response to alterations of taurine in cell medium, whereas inhibition of protein and nucleic acid synthesis by cycloheximide and actinomycin D, respectively, did not change the adaptive pattern. 4. Phorbol 12-myristate 13-acetate (PMA), mimicking the effects of diacylglycerol, induced inhibition of both beta-alanine and taurine uptake. By contrast, the Ca2(+)-ionophore A23187, mimicking the effects of IP3, only stimulated the uptake of taurine but not the influx of beta-alanine. However, the effect of PMA down-regulation and A23187 up-regulation was rapid and short-lived in contrast to the adaptive response, suggesting that the inositol phospholipid pathway involving diacetylglycerol and IP3 is less likely to be linked directly to the adaptive regulation, but rather plays a role in short-term regulation.

Adaptation, Physiological↗
PubMed1988

Biophysical evidence that light adaptation in Limulus photoreceptors is due to a negative feedback.

The steady-state stimulus-response curve of the Limulus ventral photoreceptor comprises a linear portion followed by a less-than-unity power law dependence, which is maintained over at least 4 decades of intensity. This progressive desensitization corresponds to light adaptation. For flash stimulation of dark-adapted cells, the stimulus-response curve again has an initial linear portion, but this is followed by a region of supralinearity before the curve saturates. In a previous article, we showed that the distribution of time integrals of the single-photon responses is consistent with a model of a single chain of first-order reactions. Starting with such a model, we have looked at relevant elementary nonlinear biochemical mechanisms to determine which of them can modulate the enzymatic amplifications of the chain in such a way as to lead to these behaviors. We assume that each of the two phenomena, adaptation and supralinearity, derives from a single mechanism that acts on a single enzymatic stage. We then conclude that the adaptation must be a cooperative negative feedback, in which an accessory material activated by a late stage of the transduction chain acts cooperatively to inhibit an earlier enzymatic amplification. In Limulus, the number of molecules that cooperate is between 3 and 5. We were not able to discard any of the mechanisms tested for the supralinearity, except to say that they must act at a stage of the chain later than that on which the adaptive material acts. If we assume the conclusions of a previous work which shows that the supralinearity mechanism is active during the steady state, we can also conclude that the supralinearity stage must precede the stage that is the source of the adaptive material.

Adaptation, Physiological↗
PubMed1994

Met-145 is a key residue in the dark adaptation of bacteriorhodopsin homologs.

Composition of retinal isomers in three proton pumps (bacteriorhodopsin, archaerhodopsin-1, and archaerhodopsin-2) was determined by high performance liquid chromatography in their light-adapted and dark-adapted states. In the light-adapted state, more than 95% of the retinal in all three proton pumps were in the all-trans configuration. In the dark-adapted state, there were only two retinal isomers, all-trans and 13-cis, in the ratio of all-trans: 13-cis = 1:2 for bacteriorhodopsin, 1:1 for archaerhodopsin-1, and 3:1 for archaerhodopsin-2. The difference in the final isomer ratios in the dark-adapted bacteriorhodopsin and archaerhodopsin-2 was ascribed to the methionine-145 in bacteriorhodopsin. This is the only amino acid in the retinal pocket that is substituted by phenylalanine in archaerhodopsin-2. The bacteriorhodopsin point-mutated at this position to phenylalanine dramatically altered the final isomer ratio from 1:2 to 3:1 in the dark-adapted state. This point mutation also caused a 10 nm blue-shift of the adsorption spectrum, which is similar to the shift of archaerhodopsin-2 relative to the spectra of bacteriorhodopsin and archaerhodopsin-1.

Adaptation, Physiological↗
PubMed2002

Remodeling of Ca(2+)-handling by atrial tachycardia: evidence for a role in loss of rate-adaptation.

BACKGROUND: Loss of rate-dependent action potential (AP) duration (APD) adaptation is a characteristic feature of atrial tachycardia-induced remodeling (ATR). ATR causes sarcolemmal ion-channel remodeling (ICR) and changes in Ca(2+)-handling. The present studies were designed to quantify Ca(2+)-handling changes and then to apply a mathematical AP model to assess the contributions of Ca(2+)-handling abnormalities and ICR to loss of APD rate-adaptation. METHODS: Indo-1 fluorescence was used to measure intracellular Ca(2)-transients and whole-cell patch-clamp to record APs in atrial myocytes from control dogs and dogs subjected to atrial pacing at 400/min for 6 weeks. A previously developed ionic model of the canine atrial AP was modified to reproduce measured Ca(2+)-transients of control and ATR myocytes. RESULTS: In control, APD to 95% repolarization (APD(95)) decreased by 91 ms experimentally and by 88 ms in the model over the 1-6 Hz range. In ATR myocytes, APD(95) failed to decrease over the 1-6 Hz range. Ca(2+)-handling abnormalities in ATR myocytes included slowed upstroke, decreased amplitude and strong single-beat post-rest potentiation. Unaltered Ca(2+)-handling properties included caffeine-releasable Ca(2+)-stores and Ca(2+)-transient relaxation before and after exposure to the sarcoplasmic reticulum Ca(2+)-ATPase (SERCA) inhibitor cyclopiazonic acid (CPA). Including ICR alone in the model accounted for loss of APD(50) rate-adaptation; however, KR alone reduced APD(95) rate-adaptation by only 19% to 71 ms. When both ICR and Ca(2+)-handling changes were incorporated, APD(95) rate-adaptation decreased to 6 ms, accounting for experimental observations. CONCLUSION: ICR alone does not fully account for loss of APD rate-adaptation with atrial remodeling: Ca(2+)-handling changes appear to contribute to this clinically significant phenomenon.

Action Potentials↗