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Stability and formation of localized surface waves at the dielectric--photorefractive crystal boundary.

We consider specific features of the formation of localized surface waves at the interface between linear dielectric and photorefractive crystals with a nonlocal diffusion component of nonlinear response. Profiles of the surface waves are numerically found and guiding properties of the surface are investigated. Stability of the obtained surface waves is considered and it is shown that the well-known Vakhitov-Kolokolov stability criterion derived for the local Kerr or saturable material remains legible for the medium with a nonlocal diffusion component of nonlinear response.

Journal Article↗

A high-wavenumber boundary-element method for an acoustic scattering problem.

In this paper we show stability and convergence for a novel Galerkin boundary-element-method approach to the impedance boundary-value problem for the Helmholtz equation in a half-plane with piecewise constant boundary data. This problem models, for example, outdoor sound propagation over inhomogeneous flat terrain. To achieve a good approximation with a relatively low number of degrees of freedom we employ a graded mesh with smaller elements adjacent to discontinuities in impedance, and a special set of basis functions for the Galerkin method so that, on each element, the approximation space consists of polynomials (of degree nu) multiplied by traces of plane waves on the boundary. In the case where the impedance is constant outside an interval [a,b], which only requires the discretization of [a,b], we show theoretically and experimentally that the L(2) error in computing the acoustic field on [a,b] is O(log(nu+3/2)|k(b-a)|M(-(nu+1)), where M is the number of degrees of freedom and k is the wavenumber. This indicates that the proposed method is especially commendable for large intervals or a high wavenumber. In a final section we sketch how the same methodology extends to more general scattering problems.

Journal Article↗

The single transmembrane segment drives self-assembly of OutC and the formation of a functional type II secretion system in Erwinia chrysanthemi.

Many pathogenic Gram-negative bacteria secrete toxins and lytic enzymes via a multiprotein complex called the type II secretion system. This system, named Out in Erwinia chrysanthemi, consists of 14 proteins integrated or associated with the two bacterial membranes. OutC, a key player in this process, is probably implicated in the recognition of secreted proteins and signal transduction. OutC possesses a short cytoplasmic sequence, a single transmembrane segment (TMS), and a large periplasmic region carrying a putative PDZ domain. A hydrodynamic study revealed that OutC forms stable dimers of an elongated shape, whereas the PDZ domain adopts a globular shape. Bacterial two-hybrid, cross-linking, and pulldown assays revealed that the self-association of OutC is driven by the TMS, whereas the periplasmic region is dispensable for self-association. Site-directed mutagenesis of the TMS revealed that cooperative interactions between three polar residues located at the same helical face provide adequate stability for OutC self-assembly. An interhelical H-bonding mediated by Gln(29) appears to be the main driving force, and two Arg residues located at the TMS boundaries are essential for the stabilization of OutC oligomers. Stepwise mutagenesis of these residues gradually diminished OutC functionality and self-association ability. The triple OutC mutant R15V/Q29L/R36A became monomeric and nonfunctional. Self-association and functionality of the triple mutant were partially restored by the introduction of a polar residue at an alternative position in the interhelical interface. Thus, the OutC TMS is more than just a membrane anchor; it drives the protein self-association that is essential for formation of a functional secretion system.

Amino Acid Sequence↗

Wingless repression of Drosophila frizzled 2 expression shapes the Wingless morphogen gradient in the wing.

In Drosophila wing imaginal discs, the Wingless (Wg) protein acts as a morphogen, emanating from the dorsal/ventral (D/V) boundary of the disc to directly define cell identities along the D/V axis at short and long range. Here, we show that high levels of a Wg receptor, Drosophila frizzled 2 (Dfz2), stabilize Wg, allowing it to reach cells far from its site of synthesis. Wg signaling represses Dfz2 expression, creating a gradient of decreasing Wg stability moving toward the D/V boundary. This repression of Dfz2 is crucial for the normal shape of Wg morphogen gradient as well as the response of cells to the Wg signal. In contrast to other ligand-receptor relationships where the receptor limits diffusion of the ligand, Dfz2 broadens the range of Wg action by protecting it from degradation.

Animals↗

Spatial structures in a reaction-diffusion system--detailed analysis of the "Brusselator".

Continuous dependence of spatially nonuniform concentration profiles for the 'Brussellator" reaction mechanims on the characteristic length of the system is given both for zero flux and fixed boundary conditions. Branches of solutions arising through primary bifurcation form closed curves. Secondary bifurcations giving rise to spatially asymmetric solutions exist for fixed boundary conditions. Results of a stability analysis of individual solutions are discussed. A method of composing complex spatial profiles for higher lengths from elementary solutions for smaller lenghts is suggested and tested in the case of zero flux boundary conditions. Emergence of subsequently more complex stable patterns in dependence on increasing length of the system suggests many similarities to gradual build up of complex morphogenetic patterns.

Biological Transport↗

Boundary and intimacy.

Personal boundaries are essential for psychological stability. In psychopathology, they may be too porous, as in the case of borderline personalities, or too rigid, as in the case of narcissistic and paranoid personalities. A developmental model which could explain abnormal boundaries would postulate neglect producing porous boundaries, and intrusiveness producing rigid boundaries. Case material is presented in which patients with narcissistic personality traits had grown up with an intrusive, controlling mother, and without a father to provide a buffer. This led to an inability to tolerate intimacy in adult relationships. The transference of both patients reflected their extreme sensitivity to impingement on their boundaries. Such patients suffer from inner emptiness because of their inability to incorporate positive experiences.

Adult↗

Wetting film stability and flotation kinetics.

Single bubble experiments performed with different size fractions of quartz particles and different, but known, contact angles revealed two modes of flotation dynamics in superclean water. (1.) A monotonic increase of collection efficiency Ecoll with increasing particle size was observed at high particle hydrophobicity and, correspondingly, a low wetting film stability (WFS). (2.) At low particle hydrophobicity and, correspondingly, high WFS, an extreme dependence of Ecoll on particle size was observed. The use of superclean water in our experiments prevented the retardation of bubble surface movement caused by surfactants or other impurities that is usual for other investigations and where particle-bubble inertial hydrodynamic interactions are suppressed. In the present study the free movement of the bubble surface enhances particle-bubble inertial interaction, creating conditions for different flotation modes, dependent on WFS. At the instant of inertial impact, a particle deforms the bubble surface, which may cause its rebound. Where the stability of the thin water film, formed between opposing surfaces of a bubble and a particle, is low, its rupture is accompanied with three phase contact line extension and contact angle formation before rebound. This prevents rebound, i.e. the first collision is accompanied by attachment. A high WFS prevents rupture during an impact. As a result, a contact angle does not arise and rebound is not prevented. However, rebound is accompanied by a second collision, the kinetic energy of which is smaller and can cause attachment at repetitive collision. These qualitative considerations are confirmed by the model quantification and comparison with measured Ecoll. For the first time the Sutherland equation (SE) for Ecoll is confirmed by experiment for smaller particle sizes and, correspondingly, very small Stokes numbers. The larger the particle size, the larger is the measured deviation from the SE. The SE is generalized, accounting for the centrifugal force, pressing hydrodynamic force and drainage in the low WFS case and, correspondingly, attachment occurs at first collision or during sliding. The derived generalized Sutherland equation (GSE) describes experimental data at low WFS. However, its application without account for possible rebound does not explain the measured extreme dependence in the case of high WFS. The theory for drainage during particle impact and the beginning of rebound enables conditions for either attachment or rebound in terms of the normal component of the impact velocity and the critical film thickness to be derived. Combining this condition with the GSE allowed the equation for Ecoll to be derived, accounting for attachment area shrinkage and attachment during a repetitive collision. This equation predicts the extreme dependence. Thus the WFS determines the modes of flotation dynamics and, in turn, probably affects the mechanisms, which control the flotation domain. At low WFS its upper boundary is controlled by the stability of the particle-bubble aggregate. At high WFS the upper boundary can be controlled by rebound because the latter reduces the attachment efficiency by a factor of 30 or more even with repetitive collision.

Journal Article↗

Contribution to global protein stabilization of the N-capping box in human growth hormone.

In this work we have investigated the contribution to protein stability of residues forming the boundaries of alpha-helices. At the N-terminus of helix 2 of human growth hormone there are two residues, Ser71 and Glu74, which form two reciprocal hydrogen bonds between the side chains and the backbone nitrogens of either residue (the N-capping box). In order to evaluate the stabilizing effect of each hydrogen bond, site-directed mutagenesis was employed. In addition, the effect of side-chain negative charge on helix stabilization, via charge dipole interaction, was assessed. Ultraviolet spectroscopy and near- and far-UV CD spectroscopy as well as guanidine hydrochloride protein denaturation were used as assays to monitor the conformational and free energy of stabilization changes induced by the point mutations. The results of these experiments can be summarized as follows: (a) receptor binding studies showed that the tertiary conformation of each mutant was similar to that of the native hormone, (b) far-UV CD spectroscopic analyses showed that the overall alpha-helical content was unchanged in the mutants, (c) UV absorption and CD spectroscopic analyses indicated small alterations in helical packing in those mutants in which the hydrogen bond between the side chain of Ser71 and backbone NH of Glu74 was disrupted, (d) the hydrogen bond involving the side chain of Ser71 contributes at least 1.0 kcal/mol to protein stabilization and has a 2-fold larger stabilizing effect than that of the hydrogen bond involving the Glu74 side chain, and (e) the putative charge-dipole interaction of Glu74 with the alpha-helix dipole does not contribute to the stabilization of the tertiary conformation of human growth hormone.

Circular Dichroism↗

Immunoglobulin-type domains of titin are stabilized by amino-terminal extension.

We have recently suggested that similarly folded titin modules located at different sarcomeric regions have distinct molecular properties and stability. Could our selection of module boundaries have potentially influenced our conclusions? To address this question we expressed amino-terminally extended versions of the same modules and determined, with the use of CD and Fluorescence techniques, key thermodynamic parameters characterizing their stability. We present here our results which confirm our previous observations and show that, while amino-terminal extension has a profound effect on the stability of individual modules, it does not affect at all their folding pattern or their relative stabilities. Moreover, our data suggest that the selection of module boundaries can be of critical importance for the structural analysis of modular proteins in general, especially when a well-defined intron-exon topography is absent and proteolytic methods are inconclusive.

Amino Acid Sequence↗

[Formation of stabile cupola-like lipid bilayer membranes with a mobile plateau Gibbs boundary].

Stable bilayer lipid membrane with mobile Platear-Gibbs border have been formed. The predominant condition of the formation is the presence of lipid coverage on the teflon surface near the hole. The formation process includes transformation of the initial planar lipid bilayer into cupola-shaped one by bowing of the lipid bilayer due to hydrostatic pressure, movement of the PGb along the teflon surface. The bilayer area estimated by electric capacitance increases from 0.1 x 10(-8) F to 21 x 10(-8) F. Electric conductance of the lipid bilayer has not changed except for the phase transition and membrane collapse. The electric capacitance of the BLM formed from hydrogenated egg lecithin was changed by cooling between 60 degrees and 40 degrees C with the maximum at about phase transition range. The individual membrane sustains several scannings of the temperature without disruption which is an evidence of the stability of the cupola-shaped membranes.

Electric Conductivity↗

Stability of localized structures in the Swift-Hohenberg equation.

We show that nonmonotonic (oscillatory) decay of the boundaries of phase domains is crucial for the stability of localized structures in systems described by Swift-Hohenberg equation. The less damped (more oscillatory) are the boundaries, the larger are the existence ranges of the localized structures. For very weakly damped spatial oscillations, higher-order localized structures are possible.

Journal Article↗

Shape and stability of self-assembled surface domains.

The shapes of two-dimensional (2D) nanostructures on surfaces are determined by their boundary energies as well as by long-range elastic, electrostatic or magnetic interactions. Although it is well known that long-range interactions can give rise to shape bifurcation-an abrupt change in shape symmetry at a critical size-a general description of the evolution of shape with size, systematically incorporating both the azimuthal dependence of the boundary energy and long-range interactions, has been lacking. Here we show that unconstrained shape relaxation, including previously ignored boundary curvature, leads to a novel, continuous shape change from convex at small size to concave at large size. In addition to demonstrating a method to quantitatively determine the azimuthal dependence of the boundary energy, we show that the energy gain associated with boundary curvature relaxation is a key factor in stabilizing surface nanostructures. For 7 x 7 domains on Si(111), boundary curvature reduces the formation free-energy by up to 50%.

Materials Testing↗

Comparison of residual stability in thoracolumbar spine fractures using neutral zone measurements.

Because treatment algorithms for spinal injuries depend largely on the clinical assessment of stability after injury, this study both quantified and compared the mechanical stability after three different patterns of injury in the thoracolumbar spine. We created compression fractures, burst fractures, and flexion-distraction injuries in 26 thoracolumbar specimens from human cadavers in order to compare residual stability as a function of type of injury. Spinal stability was evaluated using measurements of the boundaries of the neutral zone, which provide a measure of spinal laxity in various directions of motion. An increase after injury was indicative of greater spinal laxity and hence reduced residual stability. Geometric characteristics (or parameters) of the neutral zone boundaries were used for statistical comparison between the types of injury. Of the three groups, burst fractures retained the least residual stability and compression fractures, the greatest. The angular ranges of motion in the neutral zone for burst fractures demonstrated increases (compared with average values for intact specimens) of 154% in flexion-extension, 134% in lateral bending, and 108% in torsion after injury. The results for flexion-distraction injuries were similar to those for burst fractures in flexion-extension (126%) and torsion (62%); however, more residual stability was retained in lateral bending than was seen for burst fractures (48%). Compression fractures retained the most residual stability, with increases in motion of 40% in flexion-extension, 56% in lateral bending, and 3% in torsion. These findings may be useful in determining the necessity for surgical stabilization of the spine and selection of the appropriate system of fixation.

Biomechanical Phenomena↗

Assessment and diagnosis of personality disorder: perennial issues and an emerging reconceptualization.

This chapter reviews recent (2000-2005) personality disorder (PD) research, focusing on three major domains: assessment, comorbidity, and stability. (a) Substantial evidence has accrued favoring dimensional over categorical conceptualization of PD, and the five-factor model of personality is prominent as an integrating framework. Future directions include assessing dysfunction separately from traits and learning to utilize collateral information. (b) To address the pervasiveness and extent of comorbidity, researchers have begun to move beyond studying overlapping pairs or small sets of disorders and are developing broader, more integrated common-factor models that cross the Axis I-Axis II boundary. (c) Studies of PD stability have converged on the finding that PD features include both more acute, dysfunctional behaviors that resolve in relatively short periods, and maladaptive temperamental traits that are relatively more stable-similar to normal-range personality traits-with increasing stability until after 50 years of age. A new model for assessing PD-and perhaps all psychopathology-emerges from integrating these interrelated reconceptualizations.

Adaptation, Psychological↗

Dynamic and static stability in hexapedal runners.

Stability is fundamental to the performance of terrestrial locomotion. Running cockroaches met the criteria for static stability over a wide range of speeds, yet several locomotor variables changed in a way that revealed an increase in the importance of dynamic stability as speed increased. Duty factors (the fraction of time that a leg spends on the ground relative to the stride period) decreased to 0.5 and below with an increase in speed. The duration of double support (i.e. when both tripods, or all six legs, were on the ground) decreased significantly with an increase in speed. All legs had similar touch-down phases in the tripod, but the shortest leg, the front one, lifted off before the middle and the rear leg, so that only two legs of the tripod were in contact with the ground at the highest speeds. Per cent stability margin (the shortest distance from the center of gravity to the boundaries of support, normalized to the maximum possible stability margin) decreased with increasing speed from 60% at 10 cms-1 to values less than zero at speeds faster than 50 cms-1, indicating instances of static instability at fast speeds. The center of mass moved rearward or posteriorly with respect to the base of support as speed increased. Moments about the center of mass, as shown by the center of pressure (the equivalent of a single 'effective' leg), were variable, but were balanced by opposing moments over a stride. Thus, hexapods can exploit the advantages of both static and dynamic stability. Static or quasi-static assumptions alone were insufficient to explain straight-ahead, constant-speed locomotion and may hinder discovery of behaviors that are dynamic, where kinetic energy and momentum can act as a bridge from one step to the next.

Animals↗

Studies of the ankyrin repeats of the Drosophila melanogaster Notch receptor. 2. Solution stability and cooperativity of unfolding.

To define the boundaries of the Drosophila Notch ankyrin domain, examine the effects of repeat number on the folding of this domain, and examine the degree to which the modular architecture of ankyrin repeat proteins results in modular stability, we have investigated the thermodynamics of unfolding of polypeptides corresponding to different segments of the ankyrin repeats of Drosophila Notch. We find that a polypeptide containing the six previously identified ankyrin repeats unfolds cooperatively, but is of modest stability. However, inclusion of a putative seventh, C-terminal ankyrin sequence doubles the stability of the Notch ankyrin domain (a 1000-fold increase in the folding equilibrium constant), indicating that the seventh ankyrin repeat is an important part of the Notch ankyrin domain, and demonstrating long-range interactions among ankyrin repeats. This putative seven-repeat polypeptide also shows increases in enthalpy, denaturant dependence (m-value), and heat capacity of unfolding (DeltaC(p)()) of around 50% each, suggesting that deletion of the seventh repeat results in partial unfolding of the sixth ankyrin repeat, consistent with spectroscopic and hydrodynamic data reported in the preceding paper [Zweifel, M. E., and Barrick, D. (2001) Biochemistry 40, 14344-14356]. A polypeptide consisting of only the five N-terminal repeats has stability similar to the six-repeat construct, demonstrating that stability is distributed asymmetrically along the ankyrin domain. These data are consistent with highly cooperative two-state folding of these ankyrin polypeptides, despite their modular architecture.

Animals↗