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Results for “evolutionary genetics”

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PubMed2000

[Evolutionary genetics of rhizobia: molecular and population aspects].

The molecular analysis of the genetic systems controlling the main stages of nodule bacteria (rhizobia) interaction with a legume host (signaling at early stages and symbiotic nitrogen fixation) has shown that the widespread recombination of genetic material in free-living ancestors of rhizobia was an important factor in the evolution of these systems. These recombinations could be conditioned by a high content of repeated DNA sequences and the IS elements in the rhizobial genome. A high recombination activity of rhizobia is manifested in the panmictic structure of their populations, which is associated with frequency-dependent selection favoring rare recombinants. This selection is realized through the competition of virulent strains for the nodule formation and can be controlled by the genes whose expression depends on population density (via the quorum sensing mechanism). A high degree of panmixia in rhizobial populations is associated with their ecotypic polymorphism, manifested as the coexistence of symbiotic and nonsymbiotic strains. This type of polymorphism is caused by individual selection during the periodic changes of ecological niches (soil-plant host) in the rhizobia life cycle. The rhizobia-plant interaction stimulates selection in bacterial populations, which results in the increased levels of their heterogeneity and panmixia. The combination of individual and frequency-dependent selection types resulted in the high rates of symbiosis evolution and polyphyletic origin of diverse rhizobial species.

Biological Evolution↗
PubMed2002

Molecular & evolutionary genetics & drug resistance of the gastric pathogen, Helicobacter pylori.

Helicobacter pylori colonizes the gastric mucosa of more than half of all people worldwide and is the major cause of peptic ulcer disease and an early risk factor for gastric cancer, even though most infections are asymptomatic. Infection occurs preferentially in early childhood and once established tends to persist for years or decades. Much of the pathology H. pylori causes probably results from the host response to infection, which is affected by bacterial genotype, human host characteristics and environmental conditions. H. pylori is one of the most genetically diverse of bacterial species, with different genotypes predominating in different parts of the world. In particular, strains from India differ from those of Europe and East Asia in DNA sequence of several diagnostic gene segments. This outcome invites speculation about H. pylori origins and the possibility of Indian-specific genes that might be uncommon in Western strains. Much has been learned from H. pylori genome sequences, along with epidemiological, mutational, molecular and immunologic analyses. Candidate bacterial colonization and virulence genes and host responses are being identified, and the hypotheses being developed are amenable to tests in cell culture and animal models. These research efforts, many of which are collaborative and international, provide insights into mechanisms of establishment and persistence of H. pylori infection and virulence, and should lead to new, far more potent and cost effective anti-Helicobacter therapies or vaccines, and thereby major improvement in human health worldwide.

Drug Resistance, Microbial↗
PubMed1990

Molecular evolutionary genetics of isozymes: pattern, theory, and application.

Isozyme studies at the population genetics-ecology interface conducted at the Institute of Evolution, University of Haifa, during 15 years, 1974-1989, are reviewed in terms of the evidence, theoretical, and practical implications. These studies involve numerous individuals, populations, species, and higher taxa in nature of plants, animals, and humans tested for variation at 15 to 50 primary isozyme loci. The isozyme studies have been conducted mainly in individuals sampled in natural populations at the local, regional, and global levels. Two of the species studied were wild cereals, the progenitors of wheat and barley in the Near East Fertile Crescent. These studies have been complemented by laboratory controlled a priori experimentation of inorganic and organic pollution biology. The human genetics laboratory compared isozyme structure of Jewish and non-Jewish populations. Our results indicate that: (i) isozyme diversity in nature in abundant, at least partly adaptive, and is oriented and maintained primarily by ecological factors. (ii) Natural selection in action is highlighted by stresses involving among others thermal, chemical, and climatic factors. (iii) Speciation can occur with little change in isozyme diversity. (iv) Jews from diverse countries, and in spite of 2,000 years of Diaspora, retain in the frequencies of some isozymes their Near Eastern origins. (v) Wild cereals harbor rich genetic resources exploitable in breeding either directly as adaptive structures, or indirectly as genetic markers for genotypic production of elite agronomic traits. (vi) Isozymes have been utilized as genetic monitors of marine pollution thereby contributing to environmental quality and conservation. (vii) Isozymes can substantially contribute to conservation biology. (viii) Isozymes have been successfully utilized in constructing molecular phylogenies and in revealing new sibling species. (ix) Future theoretical and practical directions of isozyme studies at the protein and DNA levels are outlined.

Animals↗
PubMed1994

[Study on evolutionary genetics of Drosophila auraria species complex--cladistic analysis and phenetic analysis].

In the present paper, seventeen geographic strains of D. auraria species complex and five geographic strains of other four species, which belong to the montium species subgroup were biochemically examined for the construction of phylogenetic tree based on phenetic and cladistic analysis. Eighteen isoenzymes were analyzed by isoelectric focusing polyacrylamide gel electrophoresis in the above twenty two geographic strains. The phenogram of the D. auraria species complex is supported by UPGMA program of phenetic analysis. It was found that: 1. D. auraria, D. triauraria and D. quadraria grouped as an type are more closely related to one another, and D. biauraria, D. subauraria are more closely related to each other, while the former three species are distantly related to the latter two species. 2. The genetic identity between two geographic strains of same species is higher than the genetic identity between different species, except the geographic strain T-KM of D. triauraria. 3. The geographic strain T-KM, one of the D. triauraria from the southeast isolated islands Kametoku [symbol: see text] of Japan is far more distantly related to the other geographic strains of it. We suggest that the new species or subspecies are diverged from D. triauraria will be due to the geographic speciation mechanisms. 4. The genetic differentiation among eight geographic strains of D. triauraria are much larger than those among three geographic strains of D. auraria, which may be related to their different inhabitation environment as well as their flying ability. On the other hand, a cladistic analysis of the D. auraria species complex are made in the present paper.(ABSTRACT TRUNCATED AT 250 WORDS)

Animals↗
PubMed1997

[Study on the recognition and evolutionary genetics of the courtship song of species in Drosphila nasuta species subgroup].

The subgroup of Drosophila nasuta consists of 14 species, subspecies and taxa. It has a wide distribution in area of Indo-Pacific Ocean. The courtship song of species in nasuta subgroup is recorded for the first time in the paper. Some parameters of temporal pattern of pulse song were measured: the inter burst interval (IBI), the interpulse interval (IPI), the length of a pulse train (PTL), the number of pulses in a train (PN), the length of a pulse (PL) and the length of a cycle (CL). Computer analysis techniques were used to make spectral analysis of sine song. A three-dimensional power spectra of the sound was made. In this subgroup, the male of D. pulauna and Taxon-F didn't produce any sound signals during courtship, suggesting that the visual stimuli play an important role in mating process. By analysing the courtship sound signals of other species, subspecies and taxa, the sounds produced by courting male could be described as pulse song or as sine song. By studying the sounds of intra- or interspecific F1 hybrids we have found that the parameters of the temporal pattern of pulse song, for example, the mean value of IPI is controlled by X-linked and autosomal polygene and the sine song frequency is predisposed to the maternity. The phylogenetic tree of the subgroup is constructed based on the temporal pattern of the pulse sounds in different species, subspecies and taxa. The relationship within the members of the Drosophila nasuta subgroup is discussed.

Animals↗
PubMed2005

[Intratetrad mating and its genetic and evolutionary consequences].

Genetic characteristics of intratetrad mating, i.e., fusion of haploid products of one meiotic division, are considered. Upon intratetrad mating, the probability of homozygotization is lower than that upon self-fertilization, while heterozygosity at genes linked to the mating-type locus, which determines the possibility of cell fusion, is preserved. If the mating-type locus is linked to the centromere, the genome regions adjoining the centromeres of all chromosomes remain heterozygous. Intratetrad mating is characteristic of a number of fungi (Saccharomyces cerevisiae, Saccharomycodes ludwigii, Neurospora tetrasperma, Agaricus bisporus, Microbotrium violaceum, and others). Parthenogenetic reproduction in some insects also involves this type of fusion of nuclei. Intratetrad mating leads to the accumulation of haplolethals (i.e., lethals manifesting in haploid cells but not hindering their mating) in pericentric chromosome regions. Since heterozygosity increases viability of an organism, recombination has been suppressed during evolution in fungi characterized by intratetrad mating, which ensures heterozygosity of the most part of the genome.

Biological Evolution↗
PubMed2006

Genetic structure and evolutionary history of a diploid hybrid pine Pinus densata inferred from the nucleotide variation at seven gene loci.

Although homoploid hybridization is increasingly recognized as an important phenomenon in plant evolution, its evolutionary genetic mechanisms are poorly documented and understood. Pinus densata, a pine native to the Tibetan Plateau, represents a good example of a homoploid hybrid speciation facilitated by adaptation to extreme environment and ecological isolation from the parents. Its ecologically and reproductively stabilized nature offers excellent opportunity for studying genetic processes associated with hybrid speciation. In this study, we investigated the levels and patterns of nucleotide variation in P. densata and its putative parents. Haplotype composition, gene genealogies, and the levels and patterns of nucleotide variation gave further support to the hybrid nature of P. densata. Allelic history, as revealed by our data, suggests the ancient nature of the hybrid preceding elevation of the Tibetan Plateau. We detected more deviations from neutrality in P. densata than in the parental species. Thus, at least some of the evolutionary forces that have shaped the genetic variation in P. densata are likely to be different from those acting upon parental species. We speculate that when populations of P. densata invaded new territories, they had elevated rates of response to selection in order to develop traits that help them to survive and adapt in the new environments.

Diploidy↗
PubMed2002

Network random keys - a tree representation scheme for genetic and evolutionary algorithms.

When using genetic and evolutionary algorithms for network design, choosing a good representation scheme for the construction of the genotype is important for algorithm performance. One of the most common representation schemes for networks is the characteristic vector representation. However, with encoding trees, and using crossover and mutation, invalid individuals occur that are either under- or over-specified. When constructing the offspring or repairing the invalid individuals that do not represent a tree, it is impossible to distinguish between the importance of the links that should be used. These problems can be overcome by transferring the concept of random keys from scheduling and ordering problems to the encoding of trees. This paper investigates the performance of a simple genetic algorithm (SGA) using network random keys (NetKeys) for the one-max tree and a real-world problem. The comparison between the network random keys and the characteristic vector encoding shows that despite the effects of stealth mutation, which favors the characteristic vector representation, selectorecombinative SGAs with NetKeys have some advantages for small and easy optimization problems. With more complex problems, SGAs with network random keys significantly outperform SGAs using characteristic vectors. This paper shows that random keys can be used for the encoding of trees, and that genetic algorithms using network random keys are able to solve complex tree problems much faster than when using the characteristic vector. Users should therefore be encouraged to use network random keys for the representation of trees.

Algorithms↗
PubMed1996

Stability and change in personality across the life span: behavioral-genetic versus evolutionary approaches.

Recent findings and theoretical models of behavioral-genetic and evolutionary approaches to personality development across the life span are presented. Theoretical and empirical strengths and weaknesses of these approaches regarding the issue of stability and change are outlined. Although these "biological" models may appear disparate as often as they appear similar, they share the common assumption that most personality phenomena are products of environmental contingencies. However, they differ with regard to the level at which they analyze and incorporate environmental influences into their interpretations of stability and change. Genetic influences are also examined. A theoretical integration of the recent findings and of the models of genetic and environmental influences on personality via evolutionary and behavioral-genetic approaches is intended to fill in the gaps and stimulate research on the study of personality development across the life span.

Adolescent↗