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PubMed1974

Biological activity and electronic structure of the aflatoxins.

In theoretical studies of aromatic hydrocarbons, Pullman and Pullman (1969) used the molecular orbital method to correlate electronic structure with biological activity. They suggested that the interaction between carcinogens and their molecular receptors must occur through the K region of the carcinogenic molecule and involve a strong chemical binding of the type of an addition reaction. In the present work the electronic structures of aflatoxins B(1), G(1), 4-20 dehydro B(1) and of versicolorin A have been determined by the simple Hückel molecular orbital method using a computer, in order to see whether the correlation between electronic structure and biological activity is applicable to these compounds also. Calculations show that the 2-3 pi-bond, which has the highest bond order of the aflatoxin molecules, should be the most susceptible to electrophilic attack and is the most probable location of the K region. This is in agreement with the experimental observation of Dutton and Heathcote (1968) that aflatoxins B(1) and G(1) hydrate rapidly in dilute acid to the hydroxyaflatoxins B(2a) and G(2a) with an apparent total loss of carcinogenicity. The calculations also show that aflatoxins B(1) G(1) and M(1) have no suitable site for an L region and this probably accounts for their highly carcinogenic nature.

Aflatoxins↗
PubMed2006

Site-specific electronic structure analysis by channeling EELS and first-principles calculations.

Site-specific electronic structures were investigated by electron energy loss spectroscopy (EELS) under electron channeling conditions. The Al-K and Mn-L(2,3) electron energy loss near-edge structure (ELNES) of, respectively, NiAl2O4 and Mn3O4 were measured. Deconvolution of the raw spectra with the instrumental resolution function restored the blunt and hidden fine features, which allowed us to interpret the experimental spectral features by comparing with theoretical spectra obtained by first-principles calculations. The present method successfully revealed the electronic structures specific to the differently coordinated cationic sites.

Journal Article↗
PubMed1978

Electronic structure--activity relationships of antibacterial acridines.

The antibacterial activity of a series of amino- and fluorinated acridines was studied in the framework of their electronic structures. To calculate the electronic structure, a simple Hückel molecular orbital theory was used. A statistical regression analysis revealed linear correlations between the activity and the electronic indexes, particularly the electron density at the ring nitrogen.

Acridines↗
PubMed2005

Electronic structure and magnetic properties of small manganese oxide clusters.

To investigate the electronic structure and magnetic properties of manganese oxide clusters, we carried out first-principles electronic structure calculations for small MnO clusters. Among various structural and magnetic configurations of the clusters, the bulklike [111]-antiferromagnetic ordering is found to be favored energetically, while the surface atoms of the clusters exhibit interesting electronic and magnetic characteristics which are different from their bulk ones. The distinct features of the surface atoms are mainly attributed to the reduction of Mn coordination numbers and the bond-length contractions in the clusters, which may serve as a key factor for the understanding of physical and chemical properties of magnetic oxide nanoparticles.

Journal Article↗
PubMed2005

Electronic structure study of seven-coordinate first-row transition metal complexes derived from 1,10-diaza-15-crown-5: a successful marriage of theory with experiment.

A detailed study of the electronic structure of seven-coordinate Mn(II), Co(II), and Ni(II) complexes with the lariat ether N,N'-bis(2-aminobenzyl)-1,10-diaza-15-crown-5 (L(1)) is presented. These complexes represent new examples of structurally characterized seven-coordinate (pentagonal bipyramidal) complexes for the Mn(II), Co(II), and Ni(II) ions. The X-ray crystal structures of the Mn(II) and Co(II) complexes show C(2) symmetries for the [M(L(1))](2+) cations, whereas the structures of the Ni(II) complexes show a more distorted coordination environment. The magnetic properties of the Mn(II) complex display a characteristic Curie law, whereas those of the Co(II) and Ni(II) ions show the occurrence of zero-field splitting of the S = 3/2 and 1 ground states, respectively. Geometry optimizations of the [M(L(1))](2+) systems (M = Mn, Co, or Ni) at the DFT (B3LYP) level of theory provide theoretical structures in good agreement with the experimental data. Electronic structure calculations predict a similar ordering of the metal-based beta spin frontier MO for the Mn(II) and Co(II) complexes. This particular ordering of the frontier MO leads to a pseudodegenerate ground state for the d(8) Ni(II) ion. The distortion of the C(2) symmetry in [Ni(L(1))](2+) is consistent with a Jahn-Teller effect that removes this pseudodegeneracy. Our electronic structure calculations predict that the binding strength of L(1) should follow the trend Co(II) approximately Mn(II) > Ni(II), in agreement with experimental data obtained from spectrophotometric titrations.

Journal Article↗
PubMed2002

Copper(I) halide complexes with 1,3-propanebis(diphenylphosphine) and heterocyclic thione ligands: crystal and electronic structures (DFT) of [CuCl(pymtH)(dppp)], [CuBr(pymtH)(dppp)], and [Cu(mu-I)(dppp)](2).

Reaction of copper(I) chloride or bromide with equimolar amounts of the diphos ligand 1,3-propanebis(diphenylphosphine) and a heterocyclic thione (L) in acetonitrile/methanol solvent afforded mononuclear complexes of the type [CuX(dppp)(L)] with the diphosphine ligand acting as a chelating ligand. In contrast, copper(I) iodide under the same conditions gave the dimeric complex [Cu(mu-I)(dppp)](2), which contains doubly bridging iodo ligands. The structures of three complexes, namely, [CuCl(pymtH)(dppp)], [CuCl(pymtH)(dppp)], and [Cu(mu-I)(dppp)](2), have been established by single-crystal X-ray diffraction. Density functional calculations at the B3LYP level of theory provided a satisfactory description of the structural, bonding, electronic, and related properties of the [CuX(PH(3))(2)] and [CuX(1,3-pdp)] (1,3-pdp = 1,3-propane-di-phosphine) complexes and their dimers along with their associations with the pyrimidine-2-thione (pymtH) ligand. The interaction of the pymtH ligand with the Cu(I) metal center in these complexes corresponds to loose associations, the computed interaction energies predicted to be about 20 kcal/mol for all complexes in the series. The bonding mechanism of the thione ligand with the Cu(I) metal centers involves both a sigma-dative and pi-back-bonding components. The coordination of the pymtH ligand is further stabilized by X...H-N bond formation being more pronounced in the chloro than in the iodo derivatives. The Cu-X bond was also found to be a composite bond involving sigma- and pi-dative bonding components. Most important is the presence of pi-type MOs delocalized over the entire four-membered Cu(mu-X)(2)Cu ring, which supports a ring current and could probably account for the nearly equivalent Cu-X bonds in the rhombus. Moreover, all [Cu(mu-X)(PH(3))(2)](2) dimers exhibit a sigma-type MO corresponding to weak Cu.Cu interactions supporting through-ring intermetallic interactions, which seems to be responsible for the stabilization of the otherwise unstable antiaromatic Cu(mu-X)(2)Cu ring.

Journal Article↗
PubMed2004

Syntheses, structure, some band gaps, and electronic structures of CsLnZnTe3 (Ln=La, Pr, Nd, Sm, Gd, Tb, Dy, Ho, Er, Tm, Y).

Eleven new quaternary rare-earth tellurides, CsLnZnTe3 (Ln=La, Pr, Nd, Sm, Gd, Tb, Dy, Ho, Er, Tm, and Y), were prepared from solid-state reactions at 1123 K. These isostructural materials crystallize in the layered KZrCuS3 structure type in the orthorhombic space group Cmcm. The structure is composed of LnTe6 octahedra and ZnTe4 tetrahedra that share edges to form [LnZnTe3] layers. These layers stack perpendicular to [010] and are separated by layers of face- and edge-sharing CsTe8 bicapped trigonal prisms. There are no Te-Te bonds in the structure of these CsLnZnTe3 compounds so the formal oxidation states of Cs/Ln/Zn/Te are 1+/3+/2+/2-. Optical band gaps of 2.13 eV for CsGdZnTe3 and 2.12 eV for CsTbZnTe3 were deduced from single-crystal optical absorption measurements. A first-principles calculation of the density of states and the frequency-dependent optical properties was performed on CsGdZnTe3. The calculated band gap of 2.1 eV is in good agreement with the experimental value. A quadratic fit for the lanthanide contraction of the Ln-Te distance is superior to a linear one if the closed-shell atom is included.

Journal Article↗
PubMed1996

The CeO(2)(+) Cation: Gas-Phase Reactivity and Electronic Structure.

"Bare" CeO(2)(+) ions can be prepared in the gas phase by consecutive oxidation of Ce(+) with O(2) and NO(2). The ability to activate saturated and unsaturated hydrocarbons is investigated by use of Fourier-transform ion cyclotron resonance mass spectrometry. In the reactions of CeO(2)(+) with linear and branched alkanes C-H bond activation is observed almost exclusively. In contrast, both oxygen-atom transfer and C-H bond activation processes occur when thermalized CeO(2)(+) cations react with simple alkenes and aromatic compounds. C-C bond activation is not observed at all. Insight into the structural and electronic properties of neutral CeO(2) and cationic CeO(2)(+) is provided by means of quasirelativistic density-functional and ab initio pseudopotential calculations. They reveal a (2)Sigma(u)(+) ground state for CeO(2)(+) which is best described as a linear cerium dioxide with a resonating pi bond. Finally, we discuss the influence of oxo ligands on the chemistry of the cationic CeO(n)()(+) (n = 0-2) species toward hydrocarbons.

Journal Article↗
PubMed2005

Modulation of the electronic structure of semiconducting nanotubes resulting from different metal contacts.

Examined in this paper is the role of the metal electrode influencing the structure and electronic properties of semiconducting carbon nanotubes near the interface at low bias. Specifically, we present quantum-chemical calculations of finite sections of a (8,0) semiconducting single wall nanotube contacted with gold and palladium clusters. The calculations at the density functional level of theory, which included full geometry optimizations, indicate the formation of bonds between the metal atoms of the electrode and the carbon atoms of the nanotube. The local work function of the metal electrode can be expected to exhibit significant variations as a result of this bond formation. Compared to the gold-contacted nanotubes, the palladium-contacted nanotubes have a small but interesting increase in both length and diameter. The highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO) of the gold-contacted nanotube are shown localized at the edges. In contrast, the HOMO and LUMO of the palladium-contacted nanotube are extended over the entire nanotube and the metal cluster contacted to it, providing thereby a better conduction path in the contact region of the electrode and the nanotube. The involvement of the highly directional d orbitals in the interactions involving the palladium cluster leads to an enhanced pi electron density in the nanotube. This enhanced pi electron density is synonymous with an improved electron transmission.

Letter↗
PubMed2006

Geometrical and electronic structures of Au(m)Ag(n) (2 < or = m + n < or = 8).

The structural and electronic properties of Au(m)Ag(n) binary clusters (2 < or = m + n < or = 8) have been investigated by density functional theory with relativistic effective core potentials. The results indicate that Au atoms tend to occupy the surface of Au(m)Ag(n) clusters (n > or = 2 and m > or = 2). As a result, segregation of small or big bimetallic clusters can be explained according to the atomic mass. The binding energies of the most stable Au(m)Ag(n) clusters increase with increasing m+n. The vertical ionization potentials of the most stable Au(m)Ag(n) clusters show odd-even oscillations with changing m+n. The possible dissociation channels of the clusters considered are also discussed.

Journal Article↗
PubMed1980

Influence of intramolecular hydrogen bonding on the electronic structure of oxymorphone.

Approximate ab initio molecular orbital methods are used to examine the structural and electronic properties of oxymorphone. The most stable conformation of the molecule is found to include an intramolecular hydrogen bond between the C-14 hydroxyl group and the nitrogen atom in agreement with available experimental data. The total molecular electron density is transformed to a set of localized molecular orbitals, one of which corresponds to the lone electron pair on nitrogen. The hydrogen bond is shown to produce substantial bending and stretching of the lone pair when compared to its shape when such hydrogen bonding is precluded.

Journal Article↗
PubMed2003

Electronic structure of the YH3 phase from angle-resolved photoemission spectroscopy.

Yttrium can be loaded with hydrogen up to high concentrations causing dramatic structural and electronic changes of the host lattice. We report on angle-resolved photoemission experiments of the Y trihydride phase. Most importantly, we find the absence of metal d bands at the Fermi level and a set of flat, H-induced bands located at much higher binding energy than predicted, indicating an increased electron affinity at H sites.

Journal Article↗
PubMed2004

Electronic-structure dependence of the electron-phonon interaction in Ag.

The linewidths of sp- and d-band derived electronic quantum-well states in thin films of Ag on Fe(100) are measured as a function of temperature to yield the electron-phonon coupling parameters. The results vary by a factor of up to 35 among the different states. The origin of these huge differences is traced to the decay path selection for the various initial states of the holes created by the photoemission process. The electron-phonon coupling parameter for the top d-band quantum-well state, 0.015+/-0.006, is the smallest ever reported.

Journal Article↗