Search PubMed⌕ Search

SEARCH · Search PubMed

Results for “SCoT”

Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 163 records · Page 9Linked to original sources

Bacterial endobionts in the big non-mycorrhizal roots of Scots pine (Pinus sylvestris L.).

Subsurface bacterial growth occurred in an N-free medium inoculated with interior tissues of big non-mycorrhizal roots (7 to 8 mm diameter) of 15-20 years-old Scots pine (Pinus sylvestris L.) growing on sand dunes at the Baltic Sea of Poland. The bacteria were not N2 fixers as determined by the acetylene reduction method. Light microscopic and scanning electron microscopic observations revealed massive bacterial clusters residing in the cortical cells underlying epidermis and parenchyma. The bacteria produced yellow-green pigments on King's medium, which fluoresced under ultraviolet (UV) irradiation at 366 nm wavelength, and could be a siderophore-producing Pseudomonas.

Cycadopsida↗

Expressed sequences from the basidiomycetous tree pathogen Heterobasidion annosum during early infection of scots pine.

The pattern of gene expression of the basidiomycete Heterobasidion annosum, causal agent of the root rot of conifers, was analysed during its interaction with pine roots. A complementary DNA (cDNA) library was constructed from total RNA extracted from H. annosum mycelia challenged with Scots pine seedling roots for 6 and 72h. Single pass sequencing of 1148 randomly selected cDNA clones resulted in 923 expressed sequence tags (ESTs). Contig analysis and sequence comparisons identified 318 unigene sequences, of which 62 were repeatedly sampled. A putative cellular function was assigned to 223 contigs (70%) that showed a moderate to high homology to protein sequences from public databases. Variations in expression levels during the infection process were monitored on a set of 96 unigenes by reverse northern using dot hybridisation. Seven unigenes (7%) were shown to be either up (4) or down (3) regulated during interaction of the fungus with pine roots. Fungal genes differentially expressed during contact with roots include genes encoding mitochondrial proteins, a cytochrome P450 and a vacuolar ATP synthase.

Basidiomycota↗

Effects of thinning treatment on an ectomycorrhizal succession under Scots pine.

We describe a 16 yr dataset of ectomycorrhizal fruit bodies under Scots pine (Pinus sylvestris), starting from seedlings, and explore the effects of a 50% thinning treatment imposed in year 12. The over-riding pattern in the data was of successional development, with Paxillus involutus and Laccaria proxima in the earliest years, followed by Suillus species, while in later years Amanita and Cortinarius species became prominent. The typical pattern was for each species in turn to increase to a maximum count then gradually decline without actually disappearing from the community (an addition succession). For nine out of the 30 species recorded the time profiles were fitted significantly by a long-normal curve, although the best-fit lognormal models consistently under-estimated the peak count. Thinning increased counts of Suillus bovinus, Gomphidius roseus and Cortinarius semisanguineus, but overall its effect on the community was minor. Rainfall in September was weakly correlated with successional advancement (measured as DCA first axis scores). Mean fruiting date increased significantly as the stands aged.

Colony Count, Microbial↗

Comparing the variation of needle and wood terpenoids in Scots pine provenances.

We determined variation in both the concentration and composition of terpenoids in needles and wood within nine Scots pine (Pinus sylvestris) provenances. Seedlings of different provenances representing a 1200-km N-S transect from Estonia to northern Finland were cultivated in Suonenjoki nursery field, central Finland, for seven years. Growth of seedlings and the number of vertical resin ducts in wood were also determined. alpha-Pinene and 3-carene were the major monoterpenes both in the needles and wood. The total monoterpene concentration was about five times higher in the needles than in the wood. A strong positive correlation was found between proportional quantities of several terpenes of the needles and wood, particularly for 3-carene, sabinene, and terpinolene. The needles contained both labdane-type and tricyclic resin acids, whereas the wood contained only tricyclic ones. The wood had a four times higher tricyclic resin acid concentration than the needles. The highest total monoterpene concentration in the needles and in the wood occurred in the most northern Muonio provenance and in the most southern Saaremaa provenance plants, respectively. The amount of high 3-carene genotype trees decreased among the northern provenances. The wood of the most northern Muonio provenance showed the lowest total resin acid concentration, but provenance did not affect total tricyclic resin acids in the needles. Korpilahti provenance trees from central Finland had the best growth in height. In addition, Korpilahti and Ruokolahti provenance trees showed largest radial growth of stem and smallest number of vertical resin ducts. The results suggest that especially the proportional quantity of 3-carene in the needles could be used in estimating the amount of this compound in the wood and vice versa.

Genotype↗

Impact of emission from oil shale fueled power plants on the growth and foliar elemental concentrations of Scots pine in Estonia.

To study the impact of air pollution on the growth and elemental composition of conifers, 5 sample plots were established at different distances and directions from the Estonian Power Plant (Northeast Estonia) in 1999-2000. The selected stands were 75-80(85)-yr-old parts (0.05 ha) of (Oxalis)-Myrtillus site type forest of 0.7-0.8 density. The soils of all sample plots were Gleyic Podzols (Lkg) on sands. The several times higher Ca concentration in the humus horizon of the sample plot NE from the Estonian PP is caused by the prevailing westerly and southerly winds which carry more pollutants NE from the power plant than to SSW. To ascertain the effect of power plants on the growth of Scots pine (Pinus sylvestris L.), the length growth of the needles and shoots formed in 1997-2000, dry weight of 100 needles, and density of needles on the shoots were measured. As compared to the control, the strongest inhibition of growth was revealed in the sample plots situated 22 km north-east and 17 km south-west from the Estonian Power Plant. As compared to control, the needles of trees growing on sample plots closer to the power plant showed higher contents of Ca, S and Zn. The content of Mg in needles increased with distance from the pollution source. Current year needles had higher contents of Cu and Zn than older needles. Today the amounts of fly ash emitted from Narva power plants are fallen. Long-term fly ash emission has caused changes in the measurements of morphological parameters and chemical composition of needles.

Air Pollutants↗

Significance of wood terpenoids in the resistance of Scots pine provenances against the old house borer, Hylotrupes bajulus, and brown-rot fungus, Coniophora puteana.

We tested how terpenoid (i.e., monoterpenes and resin acids) composition and concentration in wood affects resistance against wood-borers and decaying fungi. Scots pine (Pinus sylvestris) wood from nine provenances having variable terpenoid profiles was studied against the old house borer, Hylotrupes bajulus, and the decay fungus, Coniophora puteana. Provenances represented a 1200-km N-S transect from Estonia to northern Finland, but they were all cultivated for 7 years in the same nursery field, in central Finland. Mean relative growth rate (MRGR) of small H. hajulus larvae positively correlated with the total monoterpene concentration of wood, and feeding was associated with high proportion of levopimaric+palustric acid in wood. Provenance did not affect the MRGR of small or big larvae, but big larvae consumed more wood and produced more frass on the northern Ylitornio trees than on the southern Rakvere and Ruokolahti trees. Low beta-pinene and total monoterpene concentration and low beta: alpha-pinene ratio in wood were all associated with a high number of eggs. The most northern Muonio provenance was the most favored as an oviposition site, differing significantly from Saaremaa, Tenhola, and Suomussalmi. Wood from Saaremaa, Tenhola, Ruokolahti, and Suomussalmi provenance was most resistant against decay fungus, differing significantly from that of Kinnula provenance. However, decay resistance was not clearly associated with the concentrations of wood terpenoids. These results suggest that monoterpene composition of wood affects resistance against wood-boring Cerambycid beetles, but resistance against wood-decaying fungi is not as clearly associated with wood terpenoids.

Adaptation, Physiological↗

The electrical impedance spectroscopy of Scots pine needles during cold acclimation.

The electrical impedance spectroscopy (EIS) was applied to current-year needles of Scots pine (Pinus sylvestris L.) in an 8-year provenance field trial in central Finland during frost hardening. The EIS analysis of the needles using a Model-A equivalent circuit indicated a sequence of events in the needles during their cold acclimation. Some of the EIS-parameters referred to maturation phenomena occurring during the pre-hardening phase at the end of the growing season, and some parameters displayed a clear coincidence with the frost hardening itself. Significant differences between provenances were found in several of the Model-A parameters. Extracellular resistance (re) and beta-coefficient decreased in all provenances in the pre-hardening phase in August and until mid-September. In the same phase, both the intracellular resistance (ri) and the cell membrane time constant (taum) first increased and then decreased. According to taum, re and beta there was a clear gradation between provenances in the pre-hardening phase. From the end of September significant differences were found in the intracellular resistance between provenances, corresponding with the differences in their hardening pattern. The dry weight (DW) content of needles increased during the study period but no clear differences were found between the provenances.

Journal Article↗

Factors influencing the extent of inbreeding depression: an example from scots pine

Detailed studies suggest that the level of inbreeding depression may vary between populations. In a study of Scots pine from Finland, the level of inbreeding depression was much lower in northern than in southern populations. We have examined theoretically whether population genetic factors, such as the level of selfing, intensity of selection against heterozygotes or homozygotes, level of mutation, a bottleneck, finite population size, or the level of polyembryony could account for this difference. Higher selfing or stronger selection against heterozygotes in the north, both at biologically reasonable levels, appear to produce changes consistent with the observed differences and we consider these to be the most likely explanations. In addition, the differences could have accumulated by these mechanisms over the age of the northern population, approximately 100 generations. Finally, the differences generated by these factors could still be maintained in the face of reasonable levels of gene flow from the south. Such a comprehensive theoretical investigation of this example has given some general insight into the potential influence of these evolutionary factors on the level of inbreeding depression and provides an approach that could be used to understand similar phenomena in other examples.

Journal Article↗

NIR spectroscopic measurement of moisture content in Scots pine seeds.

When tree seeds are used for seedling production it is important that they are of high quality in order to be viable. One of the factors influencing viability is moisture content and an ideal quality control system should be able to measure this factor quickly for each seed. Seed moisture content within the range 3-34% was determined by near-infrared (NIR) spectroscopy on Scots pine (Pinus sylvestris L.) single seeds and on bulk seed samples consisting of 40-50 seeds. The models for predicting water content from the spectra were made by partial least squares (PLS) and ordinary least squares (OLS) regression. Different conditions were simulated involving both using less wavelengths and going from samples to single seeds. Reflectance and transmission measurements were used. Different spectral pretreatment methods were tested on the spectra. Including bias, the lowest prediction errors for PLS models based on reflectance within 780-2280 nm from bulk samples and single seeds were 0.8% and 1.9%, respectively. Reduction of the single seed reflectance spectrum to 850-1048 nm gave higher biases and prediction errors in the test set. In transmission (850-1048 nm) the prediction error was 2.7% for single seeds. OLS models based on simulated 4-sensor single seed system consisting of optical filters with Gaussian transmission indicated more than 3.4% error in prediction. A practical F-test based on test sets to differentiate models is introduced.

Journal Article↗

Effects of soil copper and nickel on survival and growth of Scots pine.

The contribution of soil Cu and Ni pollution to the poor vitality and growth rate of Scots pine growing in the vicinity of a Cu-Ni smelter was investigated in two manipulation experiments. In the first manipulation, Cu-Ni smelter-polluted soil cores were transported from a smelter-pollution gradient to unpolluted greenhouse conditions. A 4-year-old pine seedling was planted in each core and cultivated for a 17-month period. In the second manipulation, pine seedlings from the same lot were cultivated for the same 17-month period in a quartz sand medium containing increasing doses of copper sulfate, nickel sulfate, and a combination of both. The variation in the biomass growth of the seedlings grown in the smelter-polluted soil cores was very similar to that of mature pine stands growing along the same smelter-pollution gradient in the field. In addition, the rate of Cu and Ni exposure explained a high proportion of the biomass growth variation, and had an effect on the Ca, K, and Mg status of the seedlings. According to the lethal threshold values determined on the basis of the metal sulfate exposure experiments, both the Cu and Ni content of the 0.5 km smelter-polluted soil cores were high enough to cause the death of most of the seedlings. The presence of Cu seemed to increase Ni toxicity.

Copper↗

Spatial and temporal expression of two cytosolic glutamine synthetase genes in Scots pine: functional implications on nitrogen metabolism during early stages of conifer development.

Ammonium assimilation during the initial stages of Scots pine growth involves two cytosolic glutamine synthetase (GS, EC: 6.3.1.2) isoenzymes encoded by separate genes, GS1a and GS1b. GS1a was most exclusively expressed in photosynthetic tissues of the seedling whereas GS1b was expressed ubiquitously showing higher levels in non-photosynthetic tissues such as root and hypocotyl. Temporal expression analysis has shown that when germination starts GS1b is the predominant form in the embryo, however, its relative abundance in the tissue decreased in the postgerminative stages when green cotyledons are developed. In contrast GS1a was present at a low level in the embryo but its abundance increased markedly during germination and seedling growth. These data suggest that GS1a and GS1b genes display different and non-redundant roles in the nitrogen metabolism of conifers. The precise localization of individual transcripts by in situ hybridization strongly supports this possibility. GS1 gene products are mainly expressed in different cellular types: GS1a in chlorophylic parenchyma and GS1b in the vascular bundles of all tissues examined in the seedling. Our data support that glutamine biosynthesis in pine seedlings follows a different pattern related to angiosperms involving two cytosolic GS proteins: one of them a typical cytosolic GS which may be involved in the generation of glutamine for N transport and a second cytosolic GS generating amino donors for the biosynthesis of major N compounds in photosynthetic tissues, a closer role to angiosperm chloroplastic GS. The results are discussed with regard to recent studies on N mobilization and metabolism during the initial stages of conifer development.

Cycadopsida↗

Scots pine expresses short-root-specific peroxidases during development.

Nine short-root-specific proteins from Scots pine (Pinus sylvestris L.) detected and isolated as individual spots by 2D-PAGE were identified. The similar peptide mass maps obtained for all nine polypeptide spots together with lectin-blotting results suggest that they represent forms of the same modified protein. N-Terminal sequence analysis of two of the peptides showed high similarity to peroxidases. RT-PCR with oligonucleotide primers corresponding to determined peptide sequences and conserved regions in plant peroxidases led to isolation of Psyp1 cDNA which is most abundantly expressed in short roots. Psyp1 is the first peroxidase cDNA to be isolated from the genus Pinus. It encodes a 363-amino-acid class-III peroxidase with a calculated molecular mass of 35.7 kDa and theoretical pI of 4.74. The predicted PSYP1 amino-acid sequence is grouped with other class-III peroxidases in phylogenetic analyses, but it has a unique amino-acid sequence which may be associated with its function in short roots or with its phylogenetic group. The presence of a signal sequence for extracellular transport indicates that PSYP1 belongs to the group of secreted class-III peroxidases. The presence of 10 tyrosine residues and putative auxin-binding regions in PSYP1 suggests that the function of the enzyme is associated with cell-wall formation in short roots. The downregulation of Psyp1 expression in symbiotic short roots hosting the ectomycorrhizal fungus Suillus bovinus is perhaps related to the change in cell-wall structure necessary for ectomycorrhizal development.

Amino Acid Sequence↗

Impact of sawfly defoliation on growth of Scots pine Pinus sylvestris (Pinaceae) and associated economic losses.

Needle defoliation by diprionid sawflies decreases the increment and timber yield of Scots pine Pinus sylvestris L. The aim of this study was to provide approximate estimates of this decrease and preliminary estimates of the economic value of growth losses and tree mortality. Growth loss after needle damage by Diprion pini (Linnaeus) was studied in western Finland. Increment cores were sampled for radial growth measurements from trees subjected to slight, moderate and heavy defoliation. A literature survey was carried out to estimate radial growth losses after defoliation by Neodiprion sertifer (Geoffroy). Calculations for economic consequences were based on previous estimates and on the ongoing 9th Finnish National Forest Inventory. Moderate defoliation by N. sertifer and D. pini reduced volume growth by 21% and 86% and heavy defoliation by 38% and 94%, respectively. Tree mortality in defoliated stands was recorded as approximately 4% after an outbreak of N. sertifer and 30% after an outbreak of D. pini. The estimated average economic value of the losses due to reduced growth and tree mortality reached $40 ha-1 after a single-year outbreak of N. sertifer and $310 ha-1 in the case of D. pini. These preliminary estimates of economic losses indicate a much higher impact of pine sawflies than those revealed by the few earlier studies in Europe.

Animals↗

Measuring and simulating crown respiration of Scots pine with increased temperature and carbon dioxide enrichment.

Acclimation to elevated atmospheric carbon dioxide concentration and temperature of respiration by the foliage in the crown of Scots pine (Pinus sylvestris) trees is measured and modelled. Starting in 1996, individual 20-year-old trees were enclosed in chambers and exposed to either normal ambient conditions (CON), elevated CO2 concentration (EC), elevated temperature (ET) or a combination of EC and ET (ECT). Respiration of individual leaves within the crown was measured in 2000. To extrapolate the response of respiration of individual leaves to the whole crown, a multi-layer model was developed and used to predict daily and annual crown respiration, in which the crown structure and corresponding microclimate data were used as input. Respiration measurements showed that EC led to higher Q10 values (4.6%) relative to CON, but lower basal respiration rates at 20 degrees C [R1.d(20)] (-7.1%) during the main growth season (days 120-240), whereas ET and ECT both reduced Q10 (-12.0 and -9.8%, respectively) throughout the year but increased R1.d(20) (27.2 and 21.6%, respectively) during the period of no-growth, and slightly reduced R1.d(20) (-1.7 and -2.8%, respectively) during the main growth season. Model computations showed that annual crown respiration increased: (1) by 16% in EC, with 92% of this increase attributable to the increase in foliage area; (2) by 35% in ET, with 66% related to the increase in foliage area and 17% to the rise in ambient temperature; and (3) by 27% in the case of ECT, with 43% attributable to the increase in foliage area and 29% to the rise in ambient temperature. Changed respiration parameters for individual leaves, induced by treatments, made only a small contribution to the annual crown respiration compared with the increased foliage area. The effects of changes in crown architecture and nitrogen distribution, caused by treatments, on the daily and annual course of crown respiration are discussed.

Carbon Dioxide↗

Seasonal variation in respiration of 1-year-old shoots of scots pine exposed to elevated carbon dioxide and temperature for 4 years.

Sixteen 20-year-old Scots pine (Pinus sylvestris L.) trees growing in the field were enclosed for 4 years in environment-controlled chambers that maintained: (1) ambient conditions (CON); (2) elevated atmospheric CO2 concentration (ambient + 350 micro mol mol-1; EC); (3) elevated temperature (ambient +2-6 degrees C; ET); or (4) elevated CO2 and elevated temperature (ECT). The dark respiration rates of 1-year-old shoots, from which needles had been partly removed, were measured over the growing season in the fourth year. In all treatments, the temperature coefficient of respiration, Q10, changed with season, being smaller during the growing season than at other times. Respiration rate varied diurnally and seasonally with temperature, being highest around mid-summer and declining gradually thereafter. When measurements were made at the temperature of the chamber, respiration rates were reduced by the EC treatment relative to CON, but were increased by ET and ECT treatments. However, respiration rates at a reference temperature of 15 degrees C were reduced by ET and ECT treatments, reflecting a decreased capacity for respiration at warmer temperatures (negative acclimation). The interaction between season and treatment was not significant. Growth respiration did not differ between treatments, but maintenance respiration did, and the differences in mean daily respiration rate between the treatments were attributable to the maintenance component. We conclude that maintenance respiration should be considered when modelling respiratory responses to elevated CO2 and elevated temperature, and that increased atmospheric temperature is more important than increasing CO2 when assessing the carbon budget of pine forests under conditions of climate change.

Carbon↗

Total and component carbon fluxes of a Scots pine ecosystem from chamber measurements and eddy covariance.

BACKGROUND AND AIMS: Distinguishing between, and quantifying, the different components of ecosystem C fluxes is critical in predicting the responses of ecosystem C cycling to climate change. The aims of this study were to quantify the photosynthetic and respiratory fluxes of a 50-year-old Scots pine (Pinus sylvestris) ecosystem, and to distinguish respiration of branches with needles from that of stems, and that of soil. METHODS: The CO2 flux of the ecosystem was continuously measured using the eddy covariance (EC) method, and its components (respiration and photosynthesis of a branch with needles, stem and soil surface) were measured with an automated chamber system, from 2001 to 2004. KEY RESULTS: All values below are chamber based. The average temperature coefficient (Q10) of respiration was 2.7, 2.2 and 4.0, respectively, for branch (Rbran), stem (Rstem) and the soil surface (Rsoil). Respiration at a reference temperature of 15 degrees C (R15) was 1.27, 0.49 and 4.02 micromol CO2 m(-2) ground s(-1) for the three components, respectively. Over 4 years, the annual Rbran, Rstem and Rsoil ranged from 196 to 256, 56 to 83 and 439 to 598 g C m(-2) ground year(-1), respectively, with a 4-year average of 227, 72 and 507 g C m(-2) ground year(-1). Annual ecosystem respiration (Reco) was 731, 783, 909 and 751 g C m(-2) ground year(-1) in years 2001-2004, respectively, gross primary production (GPP) was 922, 1030, 1138 and 1001 g C m(-2) ground year(-1), and net ecosystem production (NEP) was 191, 247, 229 and 251 g C m(-2) ground year(-1). The average contribution of Rbran, Rstem and Rsoil to Reco was 29, 9 and 62 %, respectively. Overstorey photosynthesis accounted for 96 % of GPP. The average Reco/GPP ratio was 0.78. Net primary production (NPP) in the 4 years was 469, 581, 600 and 551 g C m(-2) year(-1), respectively, with the NPP/GPP ratio 0.54 averaged over the years. CONCLUSIONS: Respiration from the soil is the dominant component of ecosystem respiration. Differences between years in Reco were due to differences in temperature during the growing season. Rsoil was more sensitive to temperature than Rbran and Rstem, and differences in Rsoil were responsible for the differences in Reco between years.

Carbon↗

Heterozygosity and fitness: no association in Scots pine.

The association of six quantitative traits related to fitness with heterozygosity at 12 allozyme loci has been examined in three populations of Scots pine, Pinus sylvestris. Because of several characteristics of this organism and of this extensive data set, it appeared that this study would show a positive association between heterozygosity and these traits if indeed heterozygotes had higher values for these quantitative traits. Using several different statistical techniques including analysis of variance, regression with the scaling recommended from the adaptive distance model, and multiple regression, no evidence of an association was found. For example, only between 7 and 8% of the regression tests were significant at the 5% level and half of these showed a positive association and half showed a negative association. Further, the multiple regression analysis explained on average only 5.8% of the variation observed in the six different traits and only 1.5% of this variation was explained by a positive association. Power analysis was carried out (for the first time on these type of data), both for the single locus heterozygous advantage and the association of individual multiple locus heterozygosity and the quantitative traits. For diameter and height, two traits often used in similar studies, the average power to detect a single locus heterozygous advantage of 0.10 was 0.737 and the average power to detect a mean heterozygote advantage of 0.05 per locus for multiple loci was 0.797. As a result of this study and an examination of the published results from other studies, it appears that what positive associations have been observed are probably not, in large part, due to the presence of intrinsic heterozygote advantage.

Genes, Plant↗