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Size and structure of the bird genome--I. DNA content of 48 species of Neognathae.

The nuclear DNA content was evaluated in 48 species of Neognathae birds belonging to 13 orders, namely Anseriformes, Charadriiformes, Columbiformes, Ciconiiformes, Falconiformes, Galliformes, Gruiformes, Passeriformes, Pelicaniformes, Phoenicopteriformes, Piciformes, Psittaciformes and Strigiformes. The DNA content, expressed in pg/nucleus, ranges from 2.81 to 4.97. The genome size variability within and among families is discussed on the basis of the Hinegardner's (1976) model of genome evolution.

Animals↗

Region-specific testosterone modulation of the vasotocin-immunoreactive system in male dark-eyed junco, Junco hyemalis.

The nonapeptide vasotocin (VT) is the avian equivalent of the mammalian antidiuretic hormone vasopressin and is believed to control aggressive and reproductive behaviors. Brain VT distribution has been described in several domesticated avian species. We previously demonstrated that VT distribution in the brain of a free-ranging male passerine, the dark-eyed Junco, Junco hyemalis, resembles that in domesticated birds. A preliminary study also suggested that the VT-immunoreactive (VT-ir) system of juncos is regulated by testosterone (T), as is the case of galliforms. To test this hypothesis, we investigated the effects of castration and T replacement on brain VT-ir innervation in adult male juncos. Castration reduced VT-ir innervation in the lateral septum (SL), the medial preoptic nucleus, the nucleus of the stria terminalis and the intercollicularis nucleus. These effects of castration were largely reversed by T treatment at high physiological doses, but significantly so only for the SL. Given the demonstrated behavioral role of the above VT-ir-containing brain regions, the results suggest that these regions may be sites of action of VT on reproductive behaviors.

Animals↗

Species specificity in avian sperm:perivitelline interaction.

The interaction of chicken spermatozoa with the inner perivitelline layer from different avian species in vitro during a 5 min co-incubation was measured as the number of points of hydrolysis produced per unit area of inner perivitelline layer. The average degree of interaction, as a proportion of that between chicken spermatozoa and their homologous inner perivitelline layer, was: equal to or greater than 100% within Galliformes (chicken, turkey, quail, pheasant, peafowl and guineafowl); 44% within Anseriformes (goose, duck); and less than 30% in Passeriformes (Zebra Finch) and Columbiformes (collared-dove). The homologue of the putative chicken sperm-binding proteins, chicken ZP1 and ZP3, were identified by Western blotting with anti-chicken ZP1/ZP3 antibody in the perivitelline layers of all species. The functional cross-reactivity between chicken spermatozoa and heterologous inner perivitelline layer appeared to be linked to known phylogenetic distance between the species, although it was not related to the relative affinity of the different ZP3 homologues for anti-chicken ZP3. This work demonstrates that sperm interaction with the egg investment does not represent such a stringent species-specific barrier in birds as it does in mammals and marine invertebrates. This may be a factor in the frequency of hybrid production in birds.

Animals↗

Interspecific variation in dietary carotenoid assimilation in birds: links to phylogeny and color ornamentation.

Many birds use carotenoid pigments to acquire rich red, orange, and yellow coloration in feathers and bare parts that is used as a signal of mate quality. Because carotenoids are derived from foods, much attention has been paid to the role of diet in generating color variation both within and among avian species. Less consideration has been given to physiological underpinnings of color variability, especially among species. Here, I surveyed published literature (e.g. captive feeding studies) on carotenoid assimilation in six bird species and completed additional controlled carotenoid-supplementation experiments in two others to consider the ability of different taxa to extract carotenoids from the diet in relation to phylogeny and coloration. I found that, for a given level of carotenoids in the diet, passerine birds (zebra finch, Taeniopygia guttata; house finch, Carpodacus mexicanus; American goldfinch, Carduelis tristis; society finch, Lonchura domestica) exhibit higher levels of carotenoids in circulation than non-passerines like gamebirds (domestic chicken, Gallus domesticus; red junglefowl, Gallus gallus; Japanese quail, Coturnix coturnix; red-legged partridge, Alectoris rufa). This difference in carotenoid accumulation is likely due to interspecific variation in micelle, chylomicron, or lipoprotein concentrations or affinities for xanthophyll carotenoids. Passerine birds more commonly develop carotenoid-based colors than do birds from ancient avian lineages such as Galliformes, and the physiological differences I uncover may explain why songbirds especially capitalize on carotenoid pigments for color production. Ultimately, because we can deconstruct color traits into component biochemical, physical, and physiological parts, avian color signals may serve as a valuable model for illuminating the proximate mechanisms behind interspecific variation in signal use in animals.

Animals↗

Common procedures in other avian species.

Although psittacine species represent the majority of avian patients seen in most exotic animal practices, nonpsittacine species such as passerines and galliformes may be presented as pets, as members of zoo collections, or as injured or ill wildlife. Many features of handling, restraint, sample collection, medicine, and surgery are similar in psittacine and nonpsittacine species. In many cases, the equipment required will be similar as well, with a few modifications.

Animals↗

Distribution of orexin/hypocretin immunoreactivity in the brain of a male songbird, the house finch, Carpodacus mexicanus.

Previous research has shown orexin/hypocretin immunoreactive (orexin-ir) neurons in domesticated Galliformes. However, these findings may not be representative of other birds and these studies did not include a distribution of orexin-ir projections throughout the brain. The present study was carried out in a wild-caught passerine, the house finch, Carpodacus mexicanus, and includes a detailed description of orexin-ir neurons and their projections. Orexin A and B-ir neurons were located in a single population centered on the paraventricular nucleus of the hypothalamus extending into the lateral hypothalamic area, consistent with other studies in birds. Orexin A and B-ir fibers were similarly visible across the brain, with the highest density within the preoptic area, hypothalamus and thalamus. Orexin-ir projections extended from the paraventricular nucleus rostrally to the preoptic area, laterally towards the medial striatum, nidopallium, and dorsally along the lateral ventricle towards the mesopallium. Caudally, the highest densities of orexin-ir fibers were found along the third ventricle. The periaqueductal grey, substantia nigra pars compacta and the locus coeruleus also showed a high density of orexin-ir fibers. This study showed a detailed fiber distribution previously unreported in birds and showed that orexin-ir neurons were located in similar areas regardless of phylogeny or domestication in birds. The apparently conserved neural distribution of orexins suggests that these peptides play similar roles among birds. The widespread distribution of the projections in brain areas serving various roles indicates the potential involvement of these peptides in multiple behavioral and physiological functions.

Animals↗

Highly pathogenic avian influenza (H7N7): vaccination of zoo birds and transmission to non-poultry species.

In 2003 an outbreak of highly pathogenic avian influenza virus (H7N7) struck poultry in The Netherlands. A European Commission directive made vaccination of valuable species in zoo collections possible under strict conditions. We determined pre- and post-vaccination antibody titres in 211 birds by haemagglutination inhibition test as a measure of vaccine efficacy. After booster vaccination, 81.5% of vaccinated birds developed a titre of > or =40, while overall geometric mean titre (GMT) was 190 (95% CI: 144-251). Birds of the orders Anseriformes, Galliformes and Phoenicopteriformes showed higher GMT, and larger percentages developed titres > or =40 than those of the other orders. Antibody response decreased with increasing mean body weight in birds > or =1.5 kg body weight. In the vicinity of the outbreak, H7N7 was detected by RT-PCR in wild species (mallards and mute swans) kept in captivity together with infected poultry, illustrating the potential threat of transmission from poultry into other avian species, and the importance of protecting valuable avian species by means of vaccination.

Animals↗

Avian thyroid development and adaptive plasticity.

Precocial and altricial modes of avian development are characterized by different degrees of maturation and physiological capabilities at hatching. In precocial birds, thyroid function and its control are well developed during the latter part of incubation and hatchlings exhibit metabolic responses to cooling and relatively mature sensory and locomotor capabilities. In altricial birds, thyroid function shows little maturation until after hatch as also is the case for thermoregulatory, sensory, and motor functions. This review describes the patterns of precocial and altricial thyroid development, their hypothalamic-pituitary control, extrathyroidal control of hormone activation and deactivation, and target tissue effects during development. Our knowledge is greatest for precocial galliform birds although the organismal picture of thyroid development has been investigated in several altricial avian species.

Adaptation, Biological↗

Reprint of "Avian thyroid development and adaptive plasticity" [Gen. Comp. Endocrinol. 147, 93-101].

Precocial and altricial modes of avian development are characterized by different degrees of maturation and physiological capabilities at hatching. In precocial birds, thyroid function and its control are well developed during the latter part of incubation and hatchlings exhibit metabolic responses to cooling and relatively mature sensory and locomotor capabilities. In altricial birds, thyroid function shows little maturation until after hatch as also is the case for thermoregulatory, sensory, and motor functions. This review describes the patterns of precocial and altricial thyroid development, their hypothalamic-pituitary control, extrathyroidal control of hormone activation and deactivation, and target tissue effects during development. Our knowledge is greatest for precocial galliform birds although the organismal picture of thyroid development has been investigated in several altricial avian species.

Journal Article↗

A recent chicken repeat 1 retrotransposition confirms the Coscoroba-Cape Barren goose clade.

Chicken repeat 1 (CR1) is a member of the non-long terminal repeat class of retrotransposons. We have isolated a truncated CR1 element within the third intron of the lactate dehydrogenase B gene of the coscoroba and the Cape Barren goose (Anseriformes; Coscoroba coscoroba, Cereopsis novaehollandiae). Because the element was absent in orthologous loci within mallard (Anas platyrhynchos), snow goose (Anser caerulescens), and tundra swan (Cygnus columbianus), it provides strong support to the recent novel proposal by Donne-Goussé et al. [Donne-Goussé, C., Laudet, V., Hänni, C., 2002. A molecular phylogeny of anseriformes based on mitochondrial DNA analysis. Mol. Phylogenet. Evol. 23, 339-356] that Cape Barren goose is the sister taxon to coscoroba. The time of insertion was approximately 10.5 Mya or less estimated from mitochondrial DNA sequence information. Because this is a recent event, the DNA sequence of this CR1 should be close to that existing at the time of its insertion. This is reflected by the consistency of several structural features expected in a new CR1 copy such as the unaltered flanking target site duplication and inverted repeats that lie 22 bp apart near the 3' end of the element. Hybridization experiments show that numerous copies of sequences closely related to the coscoroba CR1 element are dispersed throughout the genomes of tested Anseriformes, but none were detected in representatives of Galliformes and Struthioniformes.

Animals↗

Resolving the root of the avian mitogenomic tree by breaking up long branches.

Incomplete taxon sampling has been a major problem in resolving the early divergences in birds. Five new mitochondrial genomes are reported here (brush-turkey, lyrebird, suboscine flycatcher, turkey vulture, and a gull) and three break up long branches that tended to attract the distant reptilian outgroup. These long branches were to galliforms, and to oscine and suboscine passeriformes. Breaking these long branches leaves the root, as inferred by maximum likelihood and Bayesian phylogenetic analyses, between paleognaths and neognaths. This means that morphological, nuclear, and mitochondrial data are now in agreement on the position of the root of the avian tree and we can, move on to other questions. An overview is then given of the deepest divisions in the mitogenomic tree inferred from complete mitochondrial genomes. The strict monophyly of both the galloanseres and the passerines is strongly supported, leaving the deep six-way split within Neoaves as the next major question for which resolution is still lacking. Incomplete taxon sampling was also a problem for Neoaves, and although some resolution is now available there are still problems because current phylogenetic methods still fail to account for real features of DNA sequence evolution.

Animals↗

Maternal androgens in egg yolks: relation with sex, incubation time and embryonic growth.

Hormones of maternal origin are known to be transferred to the egg yolks of oviparous species. Several studies have shown that within and between clutch variation of maternal androgens may be adaptively tuned. Moreover, it has recently been hypothesized that sex steroids of maternal origin may play a role in adaptive sex ratio manipulation. For sex determination the eggs have to be incubated to allow the germinal disc to grow and thus extract sufficient DNA. This means that yolk hormone levels are determined after a number of days of incubation and this may hamper interpretation of the data. If yolk utilization or embryonic hormone production are influenced by the sex of the embryo, differences in hormone content at a certain stage of incubation do not reflect the mother's initial allocation. In this experiment we show that testosterone levels in chicken eggs do not change with incubation period. A4 levels decrease between 3 and 5 days of incubation, which we cannot explain. Male eggs did not contain higher levels of testosterone or androstenedione than female eggs, in contrast to the data reported for another galliform species, the peacock. We conclude that it is unlikely that maternal androgens are a key factor in the avian sex determination mechanism.

Androgens↗

A review of the importance of cryptosporidiosis in farm animals.

Cryptosporidium species are coccidian parasites with a large capacity to reproduce and to disseminate. Several species are known to infect farm animals, although the economic importance of cryptosporidiosis is highly host species dependent. This paper reviews the impact of cryptosporidial infections in livestock and poultry. For different farm animals, the Cryptosporidium spp. that occur, as well as their clinical and pathological features, and their interactions with other pathogens, are described. In addition, data concerning the prevalence, the transmission and the epidemiology of the disease are mentioned and a description of the economic losses associated with cryptosporidiosis in each of the hosts is given. Cryptosporidiosis seems to be mainly a problem in neonatal ruminants. Cryptosporidium parvum is considered to be an important agent in the aetiology of the neonatal diarrhoea syndrome of calves, lambs and goat kids, causing considerable direct and indirect economic losses. Avian cryptosporidiosis is an emerging health problem in poultry, associated with respiratory disease in chickens and other Galliformes, and with intestinal disease in turkeys and quails. Because of limited availability of effective drugs, the control of cryptosporidiosis relies mainly on hygienic measures and good management.

Animals↗

Visual pigments and oil droplets from six classes of photoreceptor in the retinas of birds.

Microspectrophotometric examination of the retinal photoreceptors of the budgerigar (shell parakeet), Melopsittacus undulatus (Psittaciformes) and the zebra finch, Taeniopygia guttata (Passeriformes), demonstrate the presence of four, spectrally distinct classes of single cone that contain visual pigments absorbing maximally at about 565, 507, 430-445 and 360-380 nm. The three longer-wave cone classes contain coloured oil droplets acting as long pass filters with cut-offs at about 570, 500-520 and 445 nm, respectively, whereas the ultraviolet-sensitive cones contain a transparent droplet. The two species possess double cones in which both members contain the long-wave-sensitive visual pigment, but only the principal member contains an oil droplet, with cut-off at about 420 nm. A survey of the cones of the pigeon, Columba livia (Columbiformes), confirms the presence of the three longer-wave classes of single cone, but also reveals the presence of a fourth class containing a visual pigment with maximum absorbance at about 409 nm, combined with a transparent droplet. No evidence was found for a fifth, ultraviolet-sensitive receptor. In the chicken, Gallus gallus (Galliformes), the cone class with a transparent droplet contains "chicken violet" with maximum absorbance at about 418 nm. The rods of all four species contain visual pigments that are spectrally similar, with maximum absorbance between about 506 and 509 nm. Noticeably, in any given species, the maximum absorbance of the rods is spectrally very similar to the maximum absorbance of the middle-wavelength-sensitive cone pigments.

Animals↗

Cryopreservation of semen from endangered pheasants: the first step towards a cryobank for endangered avian species.

In order to improve the genetic management of bird species within the European Endangered Programs (EEP), a research project on artificial insemination and cryopreservation of Galliformes semen has been developed. The aim of the program is to create a sperm cryobank for threatened bird species. During this study, semen was collected from 17 pheasant species and specific characteristics of ejaculates were analyzed (volume, sperm concentration, motility, pH). Artificial insemination with fresh semen was performed in nine species and with frozen semen in eight species. Inseminations with frozen and thawed semen were made in 17 species. Viability of fresh and frozen semen was assessed in vitro using double stains, eosin and nigrosin. The effect of pH (7-8.5) on viability of fresh and frozen/thawed spermatozoa was also studied. Chicks hatched in eight and three species after insemination with fresh and frozen/thawed semen, respectively. Species varied widely in semen viability: 1-30% of spermatozoa survived freezing and thawing. There was a negative correlation between the viability of frozen spermatozoa and semen pH. In our experimental conditions, the pH of diluents had no effect on semen viability. However, semen with the highest pH had the lowest quality after freezing and thawing. These experiments demonstrated the feasibility of using a very simple and inexpensive method to achieve artificial insemination and cryopreservation of semen in endangered pheasant species.

Animals↗

Transport characteristics of the colonic epithelium of the Japanese quail (Coturnix coturnix).

The colon of the domestic fowl sustains a reabsorptive Na+ current on both high- and low-sodium diets. However, there is a marked shift in the apical transport step under these two extreme conditions, from amino acid/hexose cotransport on high-salt diets to amiloride-sensitive Na+ channels on low-salt diets. The present experiments were performed to study colonic Na+ transport in another galliform species, the Japanese quail (Coturnix coturnix). Birds were maintained on a commercial game feed containing 0.18% Na+ (78 mumoles/g), an intermediate level of salt intake. Experiments were performed on unstripped colons in standard Ussing chambers with bicarbonate/CO2 buffer solution on both sides. Baseline values (n = 11) for PD (3.13 +/- 0.68 mV) and short circuit current (SCC, 30.87 +/- 7.79 microA/cm2) were lower than those reported for chickens on a similar diet, whereas tissue resistance (76.06 +/- 4.19 omega.cm2) was similar. Addition of amino acids (4 mM leucine + lysine) increased SCC by 10.85 +/- 1.97 microA/cm2. Both phloridzin (1 mM) and amiloride (10(-5) M) decreased SCC, by 7.05 +/- 1.26 and 9.64 +/- 2.68 microA/cm2, respectively. Thus, on this diet the quail colonic epithelium maintains both amino acid/hexose cotransporter activity and amiloride sensitive channel activity. Arginine vasotocin (10(-6) M) caused a small, but consistent decrease in SCC, while acetazolamide increased SCC. Aldosterone (128 micrograms/kg), given 4 hr prior to the experiment (n = 4) significantly reduced the amino acid stimulated SCC. These results confirm, for the Japanese quail, the presence of multiple apical Na+ entry mechanisms in colonic epithelium. Amino acid cotransporter activity, in particular, appears to be highly sensitive to aldosterone suppression.

Animals↗

Connections of the dorsomedial part of the nucleus intercollicularis in a male non-songbird, the Grey partridge: a tract-tracing study.

Vocal control systems have been poorly investigated in non-songbirds. In this study we describe descending neural pathways to the dorsomedial portion of the nucleus intercollicularis (ICo) in a galliform (male Grey partridges) by means of the DiI in vitro tracing technique. The simple and sex-dimorphic vocalizations of partridges, which have a critical role in sexual selection, favour this species as a model system for the study of vocal control mechanisms. Our data demonstrate that the ICo, an important site mediating the activation of vocal behavior in all birds, receives afferents from several important higher centers: the nucleus pretectalis, the tuberoinfundibular hypothalamic region, the dorsal thalamus, the preoptic region and the paleostriatal region. Efferent connections of the ICo were directed mainly to the hypothalamic area. This complex neural pathway is consistent with a major role of ICo in male courtship and vocal performance control.

Animals↗

Classification of hybrid crows in quail using artificial neural networks.

In galliforms, calls are strongly determined genetically and no influence of learning has ever been demonstrated. Hybridization is a useful tool for investigating patterns of heritability. The vocal repertoire of the European quail (Coturnix c. coturnix) and of the Japanese quail (C. c. japonica) are similar except for their crows. The European quail possesses two forms of crows and the Japanese quail only one form. We produced hybrids from the following crosses; F(1), F(2) and backcrosses. Visual analysis of spectrograms showed that hybrid crows presented all intermediaries between the three forms of crows produced by the two subspecies. According to the level of analysis of a crow, visual classifications of spectrograms probably include some subjectivity. Artificial Neural Networks (ANN) are now widely used as a powerful classification technique in behavioural sciences. We trained an ANN to recognize the three crows of the two subspecies. Then we analysed its classification of hybrid crows. The ANN revealed important inter-individual variability between the crows of the F(1) and the F(2) crosses. Birds issued from backcrosses produced crows similar to those of the European quail to which they were backcrossed. This study confirms that ANN is a useful tool to classify spectrograms rapidly.

Journal Article↗