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PubMed1998

Randomness of spatial distributions of two proteins in the cell nucleus involved in mRNA synthesis and their relationship.

Randomness and relation between point positions play an important role in archeology, cosmology, geography, and biology. An often-discarded effect is the edge effect, the effect that points are bound to a certain region. Without an appropriate correction, the outcome will be wrong. We studied the problem of randomness by comparing the distribution of interpoint distances with what can be expected for randomly distributed points (pair correlation function in statistics), and applied this to two sets of nuclear proteins inside the cell nucleus. The technique comprised labelling the proteins with a fluorescent dye, recording the fluorescent distribution with a 3D confocal microscope, and detecting the positions of the individual fluorescent spots. Results showed that, apart from studying randomness, the method is well equipped to quantitatively analyze a spot detection procedure, as the resolving power and the subvoxel accuracy were clearly visible. Given the results of assessing the randomness of the general transcription factor BRG1 and the RNA synthesizing protein RNA polymerase II (polII) in the cell nucleus, we concluded that the high intensity spots of the BRG1 protein are regularly spaced. The low intensity spots of the BRG1 protein and the low- and high-intensity spots of the polII protein showed more random behavior. The BRG1 and polII proteins showed correlation; unexpectedly, the relation was also found for the low-intensity spots, which were expected to have a more random behavior.

Animals↗
PubMed1998

Anatomy and ethics: an exploration of some ethical dimensions of contemporary anatomy.

Anatomy and ethics have traditionally been viewed as inhabiting different conceptual worlds on the assumption that the practice of anatomy is ethically neutral. This assumption is challenged by critiquing the nature of anatomy and by demonstrating that ethical issues pervade anatomical study. This should come as no surprise since anatomy deals with the structure of the human body, and it is the human body and human tissues that are central to bioethical questions concerning human life in both health and disease, at its beginning and end and in research and clinical practice. Furthermore, many issues of interest to anatomists, such as the mechanisms of organ and fetal tissue transplantation, the neurological bases of aging and dementia, and definitions of brain death, are best tackled by venturing into questions usually dealt with in a clinical context. By the same token, a number of clinical issues can be approached helpfully from starting points provided by anatomy, although they too have ethical dimensions. To illustrate the close interrelationship between anatomical and ethical issues, two topic areas are discussed: research on archeological human remains and the notion of the pre-embryo.

Anatomy↗
PubMed1999

Discontinuity of life conditions at the transition from the Roman imperial age to the early middle ages: Example from central Italy evaluated by pathological dento-alveolar lesions.

Teeth are highly informative in the study of past human populations. In particular, the occurrence of lesions in the masticatory apparatus relates diseases, diet, and living conditions. The dental pathology of three skeletal samples from the north-central part of Latium (central Italy) is reported. Two of them belong to the Roman Imperial Age (1st-3rd century AD): the first (including 942 permanent teeth and 1,085 tooth sockets) represents the rural town of Lucus Feroniae and is mainly composed of slaves and/or war veterans, whereas the second (872 permanent teeth and 1,325 tooth sockets) comes from the Isola Sacra necropolis at Portus Romae and represents the "middle class" segment of an urban population. The medieval sample (912 teeth and 1,097 tooth sockets), dated to the 7th century AD, belongs to the Lombard necropolis of La Selvicciola. All of the samples were examined for caries, abscesses, antemortem tooth loss, calculus, alveolar resorption, attrition, and enamel hypoplasia; standard methods were used to identify, classify, and quantify these conditions. The results reveal different patterns of dental and alveolar lesions for the three populations, indicating a different combination of dietary factors and hygienic conditions in the Roman samples compared to the Lombard series. As evidenced by multivariate correspondece analysis, the Romans show afffinites between each other, whereas the Medieval sample appears associated with the incidence of caries and the pathological conditions related to them, thus indicating increase of these lesions and deterioration of the quality of life in the transition to the early Middle Ages. These data agree with the respective archeological characterizations of the necropolises and the hypothetical social composition of each population. Am. J. Hum. Biol. 11:327-341. Copyright 1999 Wiley-Liss, Inc.

Journal Article↗
PubMed1999

DNA preservation: a microsatellite-DNA study on ancient skeletal remains.

To determine the effect of environmental factors on the preservation of DNA, archeological teeth of approximately similar age but greatly differing site milieu were examined for DNA content. The complex relational system of locational milieu of the samples was reduced to its essential and, at the same time, easily measurable factors. These are temperature, humidity, pH value, the geochemical properties of the soil, the amount of postmortal organic substances and the general degree of microbial infestation in the respective soil. The relative DNA content in the samples was established by determining the rate of successful polymerase chain reaction (PCR) amplifications. Differences in quantity and quality of the results are attributed to the respective prevailing environmental factor or to the respective storage conditions. Dryness, low temperature and absence of microorganisms favors the preservation of DNA. The bioapatite of bones and teeth, like the DNA, are preserved under neutral or slightly alkaline conditions. Brief storage at room temperature does not affect the amount of amplifiable DNA but does affect the reproducibility of the results. Long storage outside a lab freezer reduces the amount and the reproducibility of DNA amplifications in ancient specimens.

Bone and Bones↗
PubMed2002

Genetic drift and gene flow in a prehistoric population of the Azapa valley and coast, Chile.

The present paper studies the evolutionary process operating on prehistoric groups from the Azapa valley and coast (northern Chile). The sample consists of 237 crania from the Archaic Late, Early Intermediate, Middle, Late Intermediate, and Late periods. Six metric variables were used, which were transformed to eliminate the special environmental component and to increase the proportion of genetic variance. Population structure was assessed using a method based on quantitative genetic theory, which predicts a lineal relationship between average within-group phenotypic variance and group distance to the population centroid. Results indicate that 17.5% of the total variance accounts for special environmental variance. An excess in extraregional genetic flow is observed in the population corresponding to the Early Intermediate period in the valley. A reduced differentiation is observed between Archaic and Early Intermediate coastal groups, as well as between the latter and the inhabitants of the valley in the same period. Genetic differences between both areas increased substantially since the Middle period. Evidence indicates that long-range gene flow was lower on the coast than in the valley, the lowest estimated Fst being 0.0199 for the total population (coast and valley), 0.0111 for the coastal population, and 0.0057 for the valley. Results are discussed in terms of regional archeological and ethnohistorical evidence, and a microevolutionary model is presented to account for the biological history of the population.

Anthropology↗
PubMed2002

On the genetic uniqueness of the Ami aborigines of Formosa.

In the attempt to reconstruct the prehistory of Pacific and Indian Ocean populations, Taiwan's aborigines appear to be of particular interest. Linguistic and archeological evidence indicates that the dispersal of Austronesian speakers throughout the islands of Oceania and Southeast Asia may have originated from Taiwan about 5,000 years ago. The Ami are Taiwan's largest aboriginal group. Here, we report on six polymorphic point mutation loci in Ami individuals and compare allelic frequencies to worldwide populations. In order to examine the genetic characteristics and relationships of the Ami aborigines, we used the allelic frequency data to generate expected heterozygosities, power of discrimination values, maximum likelihood phylogenetic trees, principal component maps, and centroid gene flow plots. These analyses argue for the genetic isolation and uniqueness of the Ami people. Data supportive of limited gene flow and/or small population size, as well as genetic similarities to Native Americans, were observed.

Biological Evolution↗
PubMed2005

Microevolution in prehistoric Andean populations: chronologic mtDNA variation in the desert valleys of northern Chile.

Archeological evidence suggests that the iconographic and technological developments that took place in the highlands around Lake Titicaca in the Central Andean region had an influence on the cultural elaborations of the human groups in the valleys and the Pacific coast of northern Chile. In a previous communication, we were able to show, by means of a distance analysis, that a craniofacial differentiation accompanied the process of cultural evolution in the valleys (Rothhammer and Santoro [2001] Lat. Am. Antiq. 12:59-66). Recently, numerous South Amerindian mtDNA studies were published, and more accurate molecular techniques to study ancient mtDNA are available. In view of these recent developments, we decided 1) to study chronological changes of ancient mtDNA haplogroup frequencies in the nearby Lluta, Azapa, and Camarones Valleys, 2) to identify microevolutionary forces responsible for such changes, and 3) to compare ancient mtDNA haplogroup frequencies with previous data in order to validate craniometrical results and to reconstruct the biological history of the prehistoric valley groups in the context of their interaction with culturally more developed highland populations. From a total of 97 samples from 83 individuals, 68 samples (61 individuals) yielded amplifications for the fragments that harbor classical mtDNA markers. The haplogroup distribution among the total sample was as follows: 26.2%, haplogroup A; 34.4%, haplogroup B; 14.8%, haplogroup C; 3.3%, haplogroup D; and 21.3%, other haplogroups. Haplogroup B tended to increase, and haplogroup A to decrease during a 3,900-year time interval. The sequence data are congruent with the haplogroup analysis. In fact, the sequencing of hypervariable region I of 30 prehistoric individuals revealed 43 polymorphic sites. Sequence alignment and subsequent phylogenetic tree construction showed two major clusters associated with the most common restriction haplogroups. Individuals belonging to haplogroups C and D tended to cluster together with nonclassical lineages.

Base Sequence↗
PubMed2001

Paleoepidemiolgical patterns of trauma in a prehistoric population from central California.

Skeletal trauma was investigated in a large collection of human remains from central California (N = 162 aged and sexed adults). Lesions investigated included cranial and long bone fractures, projectile wounds, and dislocation. Long bone fractures were found in 10.5% of individuals; overall, incidence by element was 2.3%. In addition, cranial injuries were found in 4.4% of complete adult crania. Projectile wounds were seen unambiguously in four individuals (with embedded obsidian fragments) and strongly suggested in two other individuals with partially healed lesions. Finally, one case of traumatic hip dislocation was also observed. In both incidence and patterning of injuries, this population is similar to other archeological groups from California. This evidence further supports earlier reports indicating that interpersonal aggression was quite common in prehistoric California.

Adolescent↗
PubMed1976

The anthropological value of minor variants of the dental crown.

The incidences of 31 minor variants of the dental crown were scored from dental casts of samples taken from six European populations. Although several variants showed significant sex bias in one or other sample, only one (pits instead of furrow on premolar2) consistently favoured one sex. Associations between the variants were sought. Although few consistent associations were demonstrated, there was a possible tendency for extra cusps to occur together throughout the dentition. Distance statistics calculated between the samples were compatible with the expected genetical relationships of the samples, but only modern samples could be used since variants were destroyed by attrition in archeological samples. Before such distances can be considered reliable, it is necessary to know: (i)the extent to which environmental factors such as diet influence variant expression. (ii)whether or not variant bearing teeth are selectively destroyed by caries, which in civilised populations render a high proportion of most dentitions unscoreable.

Anthropology, Physical↗
PubMed1976

Ecology of dental disease.

Trace elements in the dental enamel of 43 prehistoric Indians from Illinois, Maryland and Virginia show concentration differences by age, sex and geographical locality. Sample areas on an incisor or first molar were blocked off with paraffin, washed twice with distilled water and etched 7 times with 6N HCl. An optical emission spectrophotometer was used to analyze the 9 samples, representing surface contamination and sequential enamel layers. Al, B, Ba, Cu, Fe, K, Mg, Mn, Na, Si, Sr, and Ti were present in most samples in micro or trace quantities; other elements were detected with less regularity. Comparisons of the 2 water washes with the 3 superficial, 4 deep and 7 total acid etches, suggest that during burial the residual inorganic portion of the enamel exchanged little or nothing with the soil. Enamel from archeological teeth may therefore be utilized in host factor studies in dental paleopathology. The Jy 50 Illinois Indians differ from the Potomac Creek, Virginia, Indians both in quantities of elements present and in internal sample variability. In each group, the sexes differ in 4 or more elements, both as to content and variability. Similarly, the older half of each sample differs from the younger. Patterns of sex and age difference are irregular, suggesting cultural differences, rather than physiological, in utilizing the environment during enamel-forming years. Enamel composition, as affected by differential environment utilization, may partially explain sex, age and geographical differences in dental pathology rates.

Age Factors↗
PubMed1977

ABO-typing of ancient skeletons from Israel.

Sixty-eight ancient skeletons, unearthed at Jerusalem and En Gedi and, according to the archeological data belonging to Jewish residents of these places from about 1,600 to 2,000 years ago, were ABO-typed by means of the hemagglutination-inhibition test. The blood groups of 13 skeletons were undiagnosable and the remaining 55 showed the following distribution: 30.91% A-group, 14.54% B-group, 50.91% AB-group and 3.64% O-group. According to these findings, the population to which these skeletons belonged must have had a high frequency of genes IA and IB, and a low occurrence of O blood group and its related IO gene.

ABO Blood-Group System↗
PubMed1978

ABO blood groups in Chilean and Peruvian mummies. II. Results of agglutination-inhibition technique.

ABO blood groups of Peruvian and Chilean mummies were determined with the agglutination-inhibition method. In Peru all ABO blood groups were found in the period from 3000 B.C. to 1400 A.D.; from this period to 1650 only A and O were seen. In Chile no B or AB was noted either in pre-Columbian or Colonial mummies. This confirms the archeological concept that the Chilean Indian was culturally as well as genetically different from the Peruvian Indian. Further studies using other genetic markers are in order, as well as changing certain preconceived notions on blood groups of American Indians.

ABO Blood-Group System↗
PubMed1978

An evaluation of the miles method of ageing using the Tepe Hissar dental sample.

The Miles system of ageing, based upon analysis of the rate of molar wear, was evaluated using the available dental sample from Tepe Hissar, Iran. The independently estimated ages for the mandibles and maxillae of the same individuals were found to be highly correlated (r = 0.87, p less than 0.001). Ages of a subsample of the dentitions were compared with skeletal ages for the same individuals estimated from pubic symphyseal faces and found to be significantly correlated (r = 0.82, p less than 0.005) with no significant differences in the mean ages. Although a complete evaluation of the Miles method would require its testing on a controlled population, the available dental sample from Tepe Hissar provided evidence of the reliability and validity of the Miles method of ageing archeological populations on the basis of dental wear. Due to selective retention of burial remains, the available skeletal sample from Tepe Hissar I-III is not representative of the human populations of the site and can not be used to generate meaningful demographic statistics.

Age Determination by Skeleton↗
PubMed1980

Monostotic fibrous dysplasia in the temporal bone: a late prehistoric occurrence.

Fibrous dysplasia, characterized by benign osteolytic and osteoblastic lesions may involve one or several bones. Recent investigators have suggested that it may be merely a phase of what have previously been thought to be several different bone diseases. Isolated fibrous dysplasia in the temporal bone is infrequent. Several reports of this disease have appeared in the literature of paleopathology, but none involved only the temporal bone. Monostotic involvement of the right temporal bone was discovered in the skull of an adult male recovered from an archeological site dating from the Late Mississippian period (A.D. 1,350-A.D. 1,650). It will provide an opportunity for preliminary documentation of the antiquity of this disease in the southeastern portion of the United States.

Adult↗
PubMed1980

The pattern of involvement of appendicular degenerative joint disease.

Patterns of degenerative joint disease are investigated in the shoulder, elbow, hip, and knee joints of the macerated remains of approximately 800 individuals from 20th century American and two prehistoric populations. Age is an important contributory factor in all joints, but its effects are seen most directly in the shoulder and hip. Patterns of right-left involvement also indicate the elbow is the most susceptible area to local factors. Multiple joint involvement is seen more often in females from contemporary populations but more often in males from archeological groups. No significant association is found between degenerative involvement and osteometric measurements, and cause of death is probably only incidentally associated with degenerative disease.

Age Factors↗
PubMed1982

Brain endocast asymmetry in pongids and hominids: some preliminary findings on the paleontology of cerebral dominance.

Observations on petalial asymmetry for 190 hominoid endocasts are reported, and their statistical differences assessed. While all taxa of hominoids show asymmetries to various degrees, the patterns or combinations of petalial asymmetries are very different, with fossil hominoids and modern Homo sapiens showing an identical pattern of left-occipital, right-frontal petalias, which contrasts with those found normally in pongids. Of the pongids, Gorilla shows the greater degree of asymmetry in left-occipital petalias. Only modern Homo and hominoids (Australopithecus, Homo erectus, Neandertals) show a distinct left-occipital, right-frontal petalial pattern. Analysis by chi 2 statistics shows the differences to be highly significant. Due to small sample size and incompleteness of endocasts, small-brained hominoids, i.e., Australopithecus, are problematical. To the degree that gross petalial patterns are correlated with cognitive task specialization, we speculate that human cognitive patterns evolved early in hominoid evolution and were related to selection pressures operating on both symbolic and spatiovisual integration, and that these faculties are corroborated in the archeological record.

Animals↗
PubMed1982

Intercemetery morphological variation in Arikara crania from the Mobridge Site (39WW1).

Multivariate analysis is used to examine intrasite variation in cranial morphology in the Mobridge Arikara skeletal collection. The site included three spatially distinct burial areas. The burial areas (features) are defined according to geographic location. Feature 1 is a small hill west of the village. Feature 2 is a large, long hill 200-300 yards south of the village. Feature 3 is a small knoll 100 yards south of Feature 1. The internal chronology of Mobridge has not been established with precision, but order has been postulated based on archeological data. Previous researchers have considered area 2 to be later than areas 1 and 3. Significant morphological heterogeneity exists between areas. Sample differences indicate that specific features were used by temporally distinct populations. The archaeologically proposed temporal ordering of the cemeteries is supported by osteological evidence.

Analysis of Variance↗
PubMed1982

The biocultural evolution of Khoisan populations of Southern Africa.

The research presented here offers new information on the recent evolution of Khoisan populations of southern Africa through the new study of Holocene skeletons. When combined with subfossil and historical remains, these archeological specimens provide a skeletal record for the last 5000-9000 years of southern African prehistory. Multivariate statistical analyses of cranial measurements were used to determine patterns of morphological variation in the skeletal record with which hypotheses of biocultural evolution were tested. These analyses yielded the following results. First, the traditional distinction between Bushmen ad Hottentots holds for recent inland individuals. Second, there is a suggestion of a morphologically distinct San population living on the coast of South Africa. The idea of a "Strandloper" population suggested by early scholars is here revived. The third results is that there is little evidence of complete population succession on the coast of South Africa,, suggesting that there were to massive population movements associated with the spread of Hottentot pastoralism throughout southern Africa.

Africa, Southern↗