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At least 1,603 records · Page 89Linked to original sources
PubMed1998

Radiation-induced radical formation in beta-glycerophosphate single crystals studied by electron paramagnetic resonance and electron nuclear double resonance spectroscopy: formation of an allylic-type radical.

Single crystals of disodium beta-glycerophosphate pentahemihydrate (betaGP), Na2x(HO)CH2CH(PO(4)2-)CH2(OH)x5 1/2H2O, were X-irradiated at 77 and 280 K. EPR, ENDOR and FSE techniques were used to study the formation of free radicals in these irradiated crystals to characterize possible reaction mechanisms leading to dephosphorylation. Irradiation at 77 K reveals the presence of four different radicals: two alkoxy radical conformations, AR1 and AR2, (HO)CH2CH(PO(4)2-)CH2O. and two carbon-centered hydroxyalkyl radicals, LTR1, (HO)CH2CH(PO(4)2-) C.HOH, and LTR2, with a tentative structure (HO)CH2C.H(PO(4)2-)CH2OH. AR1 and AR2 were determined to be formed on each of the two independent molecules A and B of the asymmetrical unit of betaGP, each on the 3-end of the molecule. Irradiation at 280 K reveals the presence of three hydroxyalkyl allyl radicals, R1, R2 and R3, with the common chemical structure (HO)C.H-H=CH(OH). Radicals R1 and R2 are determined to form on molecules B and A of the asymmetrical unit, respectively. The site of radical formation for R3 could not be ascertained absolutely from the available data, and there is also evidence that suggests the possibility that R3 has a hydroxyphospho-allyl radical structure. Possible reaction mechanisms for the formation of both the 77 K radicals and the 280 K radicals are suggested and discussed. The formation of an allyl-type radical in such a small-molecule single-crystal model system is an interesting and surprising result which may be relevant to the formation of the so-called 3alphaH radical species commonly observed in irradiated solid cytosine nucleosides and nucleotides. The result is also important because of the formation of the hydroxyalkyl allyl radical in solid beta-glycerophosphate is at variance with mechanisms and products shown to dominate for this and similar systems in solution radiolysis.

Crystallization↗
PubMed1999

On the "Rebound" Mechanism of Alkane Hydroxylation by Cytochrome P450: Electronic Structure of the Intermediate and the Electron Transfer Character in the Rebound Step.

Two electromeric forms, a and b (a is the ground state in a solvent) exist for the hydroxo-iron complex 1, an intermediate in the rebound mechanism of alkane hydroxylation by cytochrome P450. Results of density functional and model solvent calculations of various species are in agreement with experimental findings, and imply the role of 1 a in the rebound mechanism.

Journal Article↗
PubMed2002

Exceptionally Long (> or =2.9 A) CC bonding interactions in pi-[TCNE]2(2-) dimers: two-electron four-center cation-mediated CC bonding interactions involving pi* electrons.

Three groups of singlet ground state [TCNE](2) (2-) (TCNE=tetracyanoethylene) dimers with characteristic intradimer CC separations (r) and dihedral angles (d) [i.e., group S(t) (r approximately 1.6 A; d=180 degrees ), L(t) (r approximately 3.5 A; d=180 degrees ), and L(c) (r approximately 2.9 A; d= approximately 0 degrees ); notation: S/L: short/long bond length; subscript t/c: trans/cis, respectively] are experimentally characterized. The S(t) group is comprised of sigma-dimers of [TCNE](.-) and octacyanobutanediide, [C(4)(CN)(8)](2-), which have a typical, albeit long, sp(3)-sp(3) sigma bond (r approximately 1.6 A) between each [TCNE](.-) moiety and characteristic nu(CN), nu(CC), and delta(CCN) IR absorptions. The L groups are structurally characterized as pi-dimers of [TCNE](.-) that are either eclipsed with r approximately 2.9 A (L(c)) and the nitriles bend away from the nominal TCNE plane away from the center of the dimer by 5.0 degrees (approximately sp(2.17)) or are noneclipsed with r approximately 3.5 A (L(t)) and the nitriles bend toward the center of the dimer by 1.9 degrees ( approximately sp(2.06)). Ab initio computations on isolated dimers were used to study the formation and stability of these exceptionally long CC (> or =2.9 A) bonding interactions as well as the process of pi-[TCNE](2) (2-) dimer formation for the L(c) and L(t) groups. The results of these computational studies show that the ground-state potential curve is that of a closed-shell/open-shell singlet, depending on the distance. The short S(t) group (r approximately 1.6 A) of dimers in this surface are true minimum-energy structures; however, the L(t) and L(c) groups are unstable, although two different nonphysical minima are found when imposing a double occupancy of the orbitals. These minima are metastable relative to dissociation into the isolated [TCNE](.-) units. Consequently, the existence of dimer dianions in crystals is due to cation.[TCNE](-) interactions, which provide the electrostatic stabilization necessary to overcome the intradimer electrostatic repulsion. This cation-mediated pi*-pi* [TCNE](-).[TCNE](-) interaction complies with Pauling's definition of a chemical bond. This bonding interaction involves the pi* orbitals of each fragment, and arise from the overlap of the b(2g) SOMO on each of the two [TCNE](.-)s to form a filled b(2u) [TCNE](2) (2-) orbital. Although a pi dimer typically forms, if the fragments are close enough a sigma dimer can form. Due to the presence of cation-mediated intradimer CC bonding interactions the L(c) group of pi-[TCNE](2) (2-) dimers exhibits experimentally observable nu(CN) IR absorptions at 2191+/-2 (m), 2173+/-3 (s), and 2162+/-3 cm(-1) (s) and nu(CC) at 1364+/-3 cm(-1) (s) as well as a new UV-Vis feature in the range of 15 000 to 18 200 cm(-1) (549 to 667 nm) and averaging 16 825+/-1180 cm(-1) (594 nm) assigned to the predicted new intradimer (1)A(1g) --> (1)B(1u) transition and is purple on reflected light. Upon cooling to 77 K in 2-methyl tetrahydrofuran, this new band occurs at 18 940 cm(-1) (528 nm) for [[Et(4)N](+)](2)[TCNE](2) (2-), and the yellow solution turns deep red. Group L(t) is characterized by nu(CN) absorptions at 2215+/-2, 2197+/-3, and 2180+/-4 cm(-1) and nu(CC) at 1209+/-9 cm(-1) (w), while group S(T) has nu(CN) bands at 2215+/-4, 2157+/-3, and 2107+/-4 cm(-1) and nu(CC) at 1385+/-1 cm(-1) (vs).

Journal Article↗
PubMed2007

One-electron versus two-electron mechanisms in the oxidative addition reactions of chloroalkanes to amido-bridged rhodium complexes.

The compound syn-[{Rh(mu-NH{p-tolyl})(CNtBu)(2)}(2)] (1) oxidatively adds C--Cl bonds of alkyl chlorides (RCl) and dichloromethane to each metal centre to give the cationic complexes syn-[{Rh(mu-NH{p-tolyl})(eta(1)-R)(CNtBu)(2)}(2)(mu-Cl)]Cl and anti-[{Rh(mu-NH{p-tolyl})Cl(CNtBu)(2)}(2)(mu-CH(2))]. Reaction of 1 with the chiral alkyl chloride (-)-(S)-ClCH(Me)CO(2)Me (R*Cl) gave [{Rh(mu-NH{p-tolyl})(eta(1)-R*)(CNtBu)(2)}(2)(mu-Cl)]Cl ([3]Cl) as an equimolecular mixture of the meso form (R,S)-[3]Cl-C(s) and one enantiomer of the chiral form [3]Cl-C(2). This reaction, which takes place in two steps, was modeled step-by-step by reacting the mixed-ligand complex syn-[(cod)Rh(mu-NH{p-tolyl})(2)Rh(CNtBu)(2)] (4) with R*Cl, as a replica of the first step, to give [(cod)Rh(mu-NH{p-tolyl})(2)RhCl(eta(1)-R*)(CNtBu)(2)] (5) with racemization of the chiral carbon. Further treatment of 5 with CNtBu to give the intermediate [(CNtBu)(2)Rh(mu-NH{p-tolyl})(2)RhCl(eta(1)-R*)(CNtBu)(2)], followed by reaction with R*Cl reproduced the regioselectivity of the second step to give (R,S)-[3]Cl-C(s) and [3]Cl-C(2) in a 1:1 molar ratio. Support for an S(N)2 type of reaction with inversion of the configuration in the second step was obtained from a similar sequence of reactions of 4 with ClCH(2)CO(2)Me first, then with CNtBu, and finally with R*Cl to give [(CNtBu)(2)(eta(1)-CH(2)R)Rh(mu-NH{p-tolyl})(2)(mu-Cl)Rh(eta(1)-R*)(CNtBu)(2)]Cl (R = CO(2)Me, [7]Cl) as a single enantiomer with the R configuration at the chiral carbon. The reactions of 1 with (+)-(S)-XCH(2)CH(CH(3))CH(2)CH(3) (X = Br, I) gave the related complexes [{Rh(mu-NH{p-tolyl})(eta(1)-CH(2)CH(CH(3))CH(2)CH(3))(CNtBu)(2)}(2)(mu-X)]X, probably by following an S(N)2 profile in both steps.

Journal Article↗
PubMed1975

Electronic spectra and electronic structures of some antimicrobials derived from proflavine.

The shifts in the absorption and fluorescence spectra of 3-aminoacridine, proflavine, acridine orange, and acridine yellow were employed to show that the singly charged cations, the predominant species at biological pH, exist in the ground state in the amino form. In the lowest excited singlet state, however, the monocations of the diaminoacridines have the imino structure, a conclusion supported by the relative ground- and excited-state pKa values of the reactions of the monocation with H-+. The ground-state amino structure has its positive charge concentrated at the heterocyclic nitrogen atom, a fact that is of primary importance in determining the geometry of binding to DNA.

Acridines↗
PubMed1975

Electron microscopic and electron histochemical studies on embryonal rhabdomyosarcoma of the orbit.

A small number of differentiated tumor cells could be found besides a great number of undifferentiated ones. Abnormal dense granules were found in the nuclei of undifferentiated tumor cells, not in differentiated ones. Non-specific filaments were seen in the cytoplasm of undifferentiated tumor cells. Differentiated tumor cells demonstrated various stages of myofibrillar structures such as A, I, and Z bands, many glycogen granules, mitochondria and a basement membrane. Polyglucose particles synthesized from glycose-1-phosphate by phosphorylase activity were located in the cytoplasmic matrix of undifferentiated and differentiated tumor cells and in the karyolymph of undifferentiated tumor cells. Polyglucose partices increased in number according to the degree of differentiation of tumor cells.

Basement Membrane↗
PubMed1976

The effects of EHDP on regenerating trabecular bone using in vivo microscopic, light and electron microscopic, and electron microprobe techniques.

Metallic chambers were implanted into the proximal tibiae of rabbits to permit microscopic examination of living bone in situ. The bone repair process secondary to the injury produced during installation of the chamber, was visualized. Six to 8 weeks after implantation, osteoid and/or bone could be seen. The effects of various doses of disodium ethane-1-hydroxy-1, 1-diphosphonate (EHDP) on the repair and regeneration processes following chamber implantation were studied. Data from various techniques indicated that: (1) following low dose EHDP (0.25 mg/kg/day) chambers contained bone tissue morphologically and ultrastructurally indistinguishable from controls; and (2) with higher doses of EHDP (2.5 or 10 mg/kg/day) chamber contained spicules of normal osteoid, osteoblasts and osteocytes, but were devoid of osteoclasts. The effects of the various regimes of EHDP also were assessed on regenerated, trabecular bone contained within the tibia chambers three months after implantation of the chambers. Data from various methods of analysis supported the following conclusions: (1) the low dose of EHDP (0.25 mg/kg/day) had no toxic effects on the trabecular bone within the chambers but there appeared to be an increase in bone formation as compared to saline control; (2) higher doses of EHDP (2.5 or 10mg/kg/day) were not toxic to bone cells but thick osteoid seams formed on the trabecular bone within the chambers. No osteoclasts were found associated with the bone apparently due to the coverage of bone surfaces by osteoid seams; and (3) osteoid which accumulated after EHDP treatment of 2.5 mg/kg/day for 2 months remained uncalcified for as long as 2 months following withdrawal of EHDP administration. The results showed the value of tibial chamber for examining microscopically living bone in situ and demonstrated the inhibitory effect of EHDP on mineralization of newly formed osteoid and a lack of effect on bone cells.

Alkanes↗