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Intraspecific brood parasitism can increase the number of eggs that an individual lays in its own nest.

Intraspecific brood parasitism involves laying eggs in the nest of another individual of the same species without subsequently caring for the eggs or hatchlings. Where individuals lay in their own nest as well as parasitically, previous works predicted that parasitism leads to fewer eggs being laid in an individual's own nest, compared with the equivalent situation without parasitism. This is predicted to occur both to reduce the effects of competition from parasitically laid individuals and because parasitism can be used to reduce competition between siblings. Here, we present a quantitative model of this situation. This model indicates that the brood-reduction prediction does not hold universally. For some plausible parameter combinations, parasitism causes an increase rather than a decrease in the number of eggs laid by an individual in its own nest. This occurs because parasitism becomes a less profitable tactic as more eggs are laid by nest owners due to increasing within-nest competition. Increasing clutch size will also increase competition between the host's own offspring, but can still be advantageous if the induced reduction in parasitism is sufficient.

Animals↗

The population biology of transposable elements.

A transposable element can be defined as a DNA sequence capable of moving to new sites in the genome. Such DNA sequences have been described in a wide range of organisms. The evolutionary processes affecting transposable elements can thus be divided into two categories: changes in sequence and changes in genomic location. As with other types of evolutionary change, the nature of the evolutionary process will be reflected in the extent and type of genetic variation existing in wild populations. Quantitative models of the evolution of transposable element sequences and positions will be outlined, and related to relevant data. The extent to which models designed to describe obvious transposable elements such as the mobile sequences of Drosophila are also applicable to interspersed repetitive DNAs from other species will be discussed.

Animals↗

Human dietary change.

The transition from hunting and gathering to agriculture and animal husbandry in the Near East and Mediterranean Region began some 12,000 years ago. The ecological changes associated with this change are known to have been related to higher levels of stress from undernutrition and infectious disease. Certain pathologies found in human skeletal remains from this time are indicative of anaemia and osteoporosis, although it is not clear whether they had clear nutritional aetiologies. In this paper, dietary changes associated with changes in subsistence practices in this region are described. In addition, quantitative modelling of possible patterns of dietary and nutrient intakes of adult males before, and soon after, the establishment of agrarian economies is used to examine the proposition that the skeletal pathologies porotic hyperostosis, cribra orbitalia and porotic hyperostosis may have been due to nutritional deficiencies. The results suggest that protein deficiency was only likely if subjects were suffering from chronic energy deficiency (CED) and their diet contained no meat. Dietary calcium deficiency was possible after the transition to cultivation and animal husbandry, in the presence of moderate or severe CED. Anaemias, although present after the transition, were unlikely to have had dietary aetiologies, regardless of the severity of CED.

Agriculture↗

Fusion pore modulation as a presynaptic mechanism contributing to expression of long-term potentiation.

Working on the idea that postsynaptic and presynaptic mechanisms of long-term potentiation (LTP) expression are not inherently mutually exclusive, we have looked for the existence and functionality of presynaptic mechanisms for augmenting transmitter release in hippocampal slices. Specifically, we asked if changes in glutamate release might contribute to the conversion of 'silent synapses' that show N-methyl-D-aspartate (NMDA) responses but no detectable alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) responses, to ones that exhibit both. Here, we review experiments where NMDA receptor responses provided a bioassay of cleft glutamate concentration, using opposition between peak [glu](cleft )and a rapidly reversible antagonist, L-AP5. We discuss findings of a dramatic increase in peak [glu](cleft) upon expression of pairing-induced LTP (Choi). We present simulations with a quantitative model of glutamatergic synaptic transmission that includes modulation of the presynaptic fusion pore, realistic cleft geometry and a distributed array of postsynaptic receptors and glutamate transporters. The modelling supports the idea that changes in the dynamics of glutamate release can contribute to synaptic unsilencing. We review direct evidence from Renger et al., in accord with the modelling, that trading off the strength and duration of the glutamate transient can markedly alter AMPA receptor responses with little effect on NMDA receptor responses. An array of additional findings relevant to fusion pore modulation and its proposed contribution to LTP expression are considered.

Animals↗

Experimental study of population inversion between excited states of Ar I in a recombining Ar plasma by He contact cooling.

An experiment of He gas contact for generating population inversion in a recombining Ar plasma jet is carried out. Population inversion between Ar I excited states 5s'-->4p'[1/2](1) and 5s'-->4p[3/2](1,2), [5/2](2,3) is created by helium gas-contact cooling of electrons, whereas it is not created without gas contact. Ar I lines 1.14, 1.34, and 1.09 microm are strongly enhanced due to the He gas cooling. It is experimentally found that helium gas contact effectively lowers the electron temperature of the Ar plasma jet. The mechanisms giving rise to population inversion are discussed in terms of atomic collisional processes of the recombining plasma. The experimental results of electron temperature and population densities are discussed by a simple numerical analysis that we previously developed. It is shown that the experimental results are well explained by our modeling quantitatively for the case without gas contact, except that the agreement of number densities of lower lying nonlocal-thermodynamic-equilibrium levels is qualitative for the case with the gas contact.

Journal Article↗

Systematic calorimetric investigation of the effect of silica aerosils on the nematic to isotropic transition in heptylcyanobiphenyl.

The effect of confinement on liquid crystal phase transitions was investigated in mixtures of the liquid crystal heptylcyanobiphenyl with hydrophilic aerosils. The influence of the aerosil density on the nematic to isotropic transition was studied by adiabatic scanning calorimetry. Mixtures have been investigated with an aerosil content between rho(S)=0.1 and rho(S)=0.7, the latter being substantially higher than that investigated in previous studies with other liquid crystal-aerosil mixtures. The transitions in the examined mixtures exhibited an unusually large broadening, while the transition temperatures showed peculiar behavior. Notwithstanding, the transition (latent) heat behaved as could be expected on the basis of previous studies. The observed behavior can be explained, in the context of the elastic-strain approach usually employed to describe transition temperature shifts, by variations in the distribution of the radius of curvature R of the aerosil voids originating from sample preparation. It is important in this regard to separate the behavior of the transition temperatures and the transition (latent) heats, the former being influenced by the radius of curvature of the voids and the latter by the total void surface per unit volume. Three quantitative models were compared with experimental results. Both the pinned boundary layer and the random field model yield an evolution of transition temperatures not in agreement with experimental observations. More importantly, they predict a decrease of the pretransitional specific heat capacity, not supported by experiment. The difficulties with these models are avoided in a third, mean-field surface-induced order model.

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Synaptic plasticity with discrete state synapses.

Experimental observations on synaptic plasticity at individual glutamatergic synapses from the CA3 Shaffer collateral pathway onto CA1 pyramidal cells in the hippocampus suggest that the transitions in synaptic strength occur among discrete levels at individual synapses [C. C. H. Petersen, Proc. Natl. Acad. Sci. USA 85, 4732 (1998); O'Connor, Wittenberg, and Wang, D. H. O'Connor, Proc. Natl. Acad. Sci. USA (to be published); J. M. Montgomery and D. V. Madison, Trends Neurosci. 27, 744 (2004)]. This happens for both long term potentiation (LTP) and long term depression (LTD) induction protocols. O'Connor, Wittenberg, and Wang have argued that three states would account for their observations on individual synapses in the CA3-CA1 pathway. We develop a quantitative model of this three-state system with transitions among the states determined by a competition between kinases and phosphatases shown by D. H. O'Connor, to be determinant of LTP and LTD, respectively. Specific predictions for various plasticity protocols are given by coupling this description of discrete synaptic alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptor ligand gated ion channel conductance changes to a model of postsynaptic membrane potential and associated intracellular calcium fluxes to yield the transition rates among the states. We then present various LTP and LTD induction protocols to the model system and report the resulting whole cell changes in AMPA conductance. We also examine the effect of our discrete state synaptic plasticity model on the synchronization of realistic oscillating neurons. We show that one-to-one synchronization is enhanced by the plasticity we discuss here and the presynaptic and postsynaptic oscillations are in phase. Synaptic strength saturates naturally in this model and does not require artificial upper or lower cutoffs, in contrast to earlier models of plasticity.

Action Potentials↗

Energy dissipation measures in three-dimensional disordered porous media.

The onset of nonlinear flow was analyzed in three-dimensional random, porous granular systems with 60% porosity using a lattice-Boltzmann model. Quantitative analysis was based on participation numbers built on local kinetic energies and energy dissipation rates computed via nonequilibrium kinetic (viscous stress) tensors. In contrast to the kinetic energy participation number, which characterizes the onset of nonlinearity in terms of a transition from a locally concentrated to a dispersed distribution of kinetic energy densities, the nonequilibrium kinetic tensor participation number characterizes the onset of nonlinearity in terms of a transition from a dispersed to a locally concentrated distribution of energy dissipation densities as the flow rate increases. The transition characterized by the nonequilibrium kinetic tensor participation number occurred over a nearly equal or a narrower range of Reynolds numbers when compared to the transition characterized by the kinetic energy participation number.

Journal Article↗

Pipe network model for scaling of dynamic interfaces in porous media

We present a numerical study on the dynamics of imbibition fronts in porous media using a pipe network model. This model quantitatively reproduces the anomalous scaling behavior found in imbibition experiments [Phys. Rev. E 52, 5166 (1995)]. Using simple scaling arguments, we derive a new identity among the scaling exponents in agreement with the experimental results.

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Evidence for Successive Doping-Induced Dimensionality Transitions in the Spin-Chain Compound Ca2+xY2-xCu5O10.

We report the results of heat capacity, SQUID magnetometry, and x-ray diffraction studies of polycrystalline and magnetically aligned Ca 2+xY 2-xCu 5O (10), a quasi-1D compound. As holes are doped into the chains from x = 0-2, the data indicate a change from 3D long-range order to 1D chain behavior to cluster behavior. We quantitatively model the magnetic and thermal properties of heavily doped Ca 4Cu 5O (10) in terms of spin clusters. Anisotropic susceptibility data indicate a doping-independent easy axis of magnetization perpendicular to the planes containing the chains; also, a spin-flop transition is observed, providing a measure of the anisotropy field.

Journal Article↗

Dipole moments of molecules solvated in helium nanodroplets.

Stark spectra are reported for hydrogen cyanide and cyanoacetylene solvated in helium nanodroplets. The goal of this study is to understand the influence of the helium solvent on measurements of the permanent electric dipole moment of a molecule. We find that the dipole moments of the helium solvated molecules, calculated assuming the electric field is the same as in vacuum, are slightly smaller than the well-known gas-phase dipole moments of HCN and HCCCN. A simple elliptical cavity model quantitatively accounts for this difference, which arises from the dipole-induced polarization of the helium.

Journal Article↗

Probing the spin state of a single electron trap by random telegraph signal.

We have studied the random telegraph signal (RTS) generated by a single paramagnetic spin center adjacent to a submicrometer silicon metal-oxide-semiconductor field-effect transistor. An in-plane magnetic field induces a substantial change in the statistics of the RTS. We show that a model using the grand partition theorem can qualitatively explain the change in statistics of the RTS as a function of the applied magnetic field. While the data at high temperatures can be well described by this simple model, quantitative discrepancy increases as the temperature is lowered.

Journal Article↗

Rescattering double ionization of D2 and H2 by intense laser pulses.

We have measured momentum spectra and branching ratios of charged ionic fragments emitted in the double ionization of D2 (and H2) molecules by short intense laser pulses. We find high-energy coincident D+ (and H+) ion pairs with kinetic energy releases between 8 and 19 eV which appear for linearly polarized light but are absent for circularly polarized light. The dependence on the polarization, the energy distributions of the ions, and the dependence on laser intensity of yield ratios lead us to interpret these ion pairs as due to a rescattering mechanism for the double ionization. A quantitative model is presented which accounts for the major features of the data.

Journal Article↗

Surface crystallization of amorphous solid water.

We demonstrate that the crystallization of thin, supported amorphous solid water layers is initiated at the water surface. This is concluded from the observation of sequential crystallization of amorphous water at the surface, in the bulk, and at the water-support interface. A surface nucleation model quantitatively reproduces the observed transformation kinetics at the three sites.

Journal Article↗

Spin-controlled Mott-Hubbard bands in LaMnO3 probed by optical ellipsometry.

Spectral ellipsometry is used to determine the dielectric function of an untwinned crystal of LaMnO3 in the range 0.5-5.6 eV at temperatures 50<or=T<or=300 K. A pronounced redistribution of spectral weight is found at the Ne el temperature T(N)=140 K. The anisotropy of the spectral weight transfer matches the magnetic ordering pattern. A superexchange model quantitatively describes spectral weight transfer induced by spin correlations. This analysis implies that the lowest-energy transitions around 2 eV are intersite d-d transitions, and that LaMnO3 is a Mott-Hubbard insulator.

Journal Article↗

Hole interactions with molecular vibrations on DNA.

We report on a study of the interactions between holes and molecular vibrations on dry DNA using photoinduced infrared absorption spectroscopy. Laser photoexcited holes are found to have a room-temperature lifetime in excess of tau > 1 ms, clearly indicating the presence of localization. However, from a quantitative model analysis of the frequency shifts of vibrational modes caused by the holes, we find the hole-vibrational coupling constant to be relatively small, lambda approximately 0.2. This interaction leads to a change in the conformational energy of DeltaE0 approximately 0.015 eV, which is too small to cause self-trapping at room temperature. We conclude that, at least in the dry (A) form, DNA is best understood in terms of a double chain of coupled quantum dots arising from the pseudorandom chain sequence of base pairs, in which Anderson localization prevents the formation of a metallic state.

DNA↗

Controlling orbital moment and spin orientation in CoO layers by strain.

We have observed that CoO films grown on different substrates show dramatic differences in their magnetic properties. Using polarization dependent x-ray absorption spectroscopy at the Co L2,3 edges, we revealed that the magnitude and orientation of the magnetic moments strongly depend on the strain in the films induced by the substrate. We presented a quantitative model to explain how strain together with the spin-orbit interaction determine the 3d orbital occupation, the magnetic anisotropy, as well as the spin and orbital contributions to the magnetic moments. Control over the sign and direction of the strain may, therefore, open new opportunities for applications in the field of exchange bias in multilayered magnetic films.

Journal Article↗

Delocalization in weakly coupled disordered wires: application to conjugated polymers.

It is well known that even for minimal disorder one-dimensional wires are insulators: all 1D electron states are localized. Here, the influence of interwire coupling on delocalization of 1D states is examined. Based on perturbation theoretic arguments for the formation of 3D states in coupled wires and subsequent scaling analysis, practical expressions for the microscopic conditions of electronic delocalization and coherent conductivity of coupled 1D wires are obtained. The model quantitatively explains the temperature dependent dc conductivity in conducting polymers at both sides of the metal-insulator transition and links the experimental data to microscopic material parameters.

Journal Article↗