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PubMed2002

Limb anomalies: Developmental and evolutionary aspects.

In this review we describe the developmental mechanisms involved in the making of a limb, by focusing on the nature and types of interactions of the molecules that play a part in the regulation of limb patterning and characterizing clinical conditions that are known to result from the abnormal function of these molecules. The latter subject is divided into sections dealing with syndromal and nonsyndromal deficiencies, polydactylies, and brachydactylies. Conditions caused by mutations in homeobox genes and fibroblast growth factors and their receptor genes are listed separately. Since the process of limb development has been conserved for more than 300 millions years, with all the necessary adaptive modifications occurring throughout evolution, we also take into consideration the evolutionary aspects of limb development in terms of genetic repertoire, molecular pathways, and morphogenetic events.

Animals↗
PubMed2007

Non-genomic transgenerational inheritance of disease risk.

That there is a heritable or familial component of susceptibility to chronic non-communicable diseases such as type 2 diabetes, obesity and cardiovascular disease is well established, but there is increasing evidence that some elements of such heritability are transmitted non-genomically and that the processes whereby environmental influences act during early development to shape disease risk in later life can have effects beyond a single generation. Such heritability may operate through epigenetic mechanisms involving regulation of either imprinted or non-imprinted genes but also through broader mechanisms related to parental physiology or behaviour. We review evidence and potential mechanisms for non-genomic transgenerational inheritance of 'lifestyle' disease and propose that the 'developmental origins of disease' phenomenon is a maladaptive consequence of an ancestral mechanism of developmental plasticity that may have had adaptive value in the evolution of generalist species such as Homo sapiens.

Animals↗
PubMed1995

On the allometric mass exponent, when it exists.

Allometric power laws of the form q varies; is directly proportional to Mb are commonly used to describe the dependence of a physiological variable q on body mass M in a class of animals that vary widely in size. The theoretical basis for such a law has been ignored or misstated in much of the biological literature. In this paper, an axiomatic basis for establishing the existence of a power law is proposed and a formula for calculating the theoretical mass exponent b is derived. It is shown that the value of b, when it exists, depends not only on the physical dimensions of q but also on biological assumptions about the class of animals under consideration. Two examples are worked through, one concerning the flying speed of birds and one concerning the controversial subject of metabolic scaling in mammals. The wide range of mass exponents reported in the literature, it is argued, express no simple physical principle, but a variety of biological mechanisms including evolution, maturation, and seasonal adaptation.

Animals↗
PubMed1976

Differential survival of isolated portions of crayfish axons.

Electron microscopic studies show that transplanted segments of sensory axons of varying lengths degenerate within 7-14 days whereas transplanted segments of crustacean motor axons survive morphologically intact for 20-30 days. The middle portion of an isolated motor axon segment degenerates less rapidly than portions of the same axon located nearer the periphery or nearer the ventral nerve cord. One week after transplantation, glial cells appear to phagocytize sensory axons whereas glial cells around motor axons appear to hypertrophy and to have more rough endoplasmic reticulum. After three weeks, motor axons also appear to be phagocytized by glial cells. These data suggest that the glia surrounding isolated motor axons can change from a supportive to a destructive function, whereas glial cells surrounding severed sensory axons primarily have a destructive function. These and other data also indicate that crustacean motor axons receive significant trophic inputs from their own perikaryon, from post-synaptic contacts, and from adjacent glial cells. The possibility that adjacent healthy cells may supply metabolically deficient cells with needed substances could be a significant adaptive advantage for the evolution of multicellular organisms.

Animals↗
PubMed1997

Selective neutrality and enzyme kinetics.

This article appeals to a recent theory of enzyme evolution to show that the properties, neutral or adaptive, which characterize the observed allelic variation in natural populations can be inferred from the functional parameters, substrate specificity, and reaction rate. This study delineates the following relations between activity variables, and the forces--adaptive or neutral--determining allelic variation: (1) Enzymes with broad substrate specificity: The observed polymorphism is adaptive; mutations in this class of enzymes can result in increased fitness of the organism and hence be relevant for positive selection. (2) Enzymes with absolute substrate specificity and diffusion-controlled rates: Observed allelic variation will be absolutely neutral; mutations in this class of enzymes will be either deleterious or have no effect on fitness. (3) Enzymes with absolute or group specificity and nondiffusion-controlled rates: Observed variation will be partially neutral; mutants which are selectively neutral may become advantageous under an appropriate environmental condition or different genetic background. We illustrate each of the relations between kinetic properties and evolutionary states with examples drawn from enzymes whose evolutionary dynamics have been intensively studied.

Adaptation, Physiological↗
PubMed1984

Visual pigments and the labile scotopic visual system of fish.

Among mammals, birds, most reptiles and chondrichthians, only rhodopsins are present. Among agnathans, osteichthians, amphibians and certain freshwater turtles there are species having only porphyropsins or only rhodopsins or, more interestingly, both pigments, either sequentially or together. This latter grouping represents the paired-pigment species. Associated with the presence of paired-pigments is the possibility that the proportions of rhodopsin and porphyropsin may change. Depending on the characteristics of each paired-pigment species, naturally occurring changes in visual pigment ratios are related to migrations in anadromous and catadromous teleosts and anadromous cyclostomes and to seasonal variation in several teleosts. In addition, the visual pigment composition of certain species of teleosts has been altered by the specific effects of light, temperature, diet and hormones. Of two possible mechanisms for altering spectral sensitivity, varying the proportion of rhodopsin and porphyropsin is far more common than utilizing a single chromophore and changing the opsin. In addition to the long established evidence that extractable rod pigment ratios may change during the life cycle or in response to specific exogenous factors, there is the more recent recognition from microspectrophotometry that cone pigment ratios may also change in concert. The effect of lighting conditions and temperature on the visual pigment composition of certain paired-pigment species is presented.

Animals↗
PubMed1989

The surface membrane 3'-nucleotidase/nuclease of trypanosomatid protozoa.

The plasma membrane of protozoan parasites has been the subject of intense research interest because it serves as the interface between the parasite and its host] This structure functions in the acquisition of nutrients, in the response to environmental signals, in the secretion and excretion of metabolites, in the recognition of host surfaces and in the avoidance of host-destructive factors including the components of the immune response. Recent technological advances, such as the use of monoclonal antibodies and recombinant DNA methodologies, have led to the identification of specific plasma membrane components and their coding; sequences, often in the absence of information regarding the physiological role of the component. In this article Michael Gottlieb considers the functional activity of o plasma membrane enzyme which has been identified in a number of protozoa belonging to the family Trypanosomatidae, and considers its adaptive significance and possible evolution in the different genera of this family.

Journal Article↗
PubMed1993

Organization of cortical afferent input to orbitofrontal areas in the rhesus monkey.

Odorant signal processing takes place in a diverse group of primary olfactory areas which receive direct input from the olfactory bulb. Orbitofrontal cortices participate in olfactory functions, but the pathways through which they receive olfactory or other input have not been clearly defined. The retrograde tracers horseradish peroxidase and fluorescent dyes were injected in orbital cortices to study their afferent cortical connections. Labeled neurons in primary olfactory areas (prepiriform cortex, anterior olfactory nucleus and olfactory tubercle) were directed mainly to a posterior orbitofrontal region and to a lesser extent the neighboring caudal part of area 13. There was no evidence of direct projections from primary olfactory areas to the rostral parts of area 13, or to areas 12 or 11. Most labeled neurons in primary olfactory areas were directed to agranular cortices, fewer projected to dysgranular areas, and there was no evidence that any reached granular cortices. The areas which received the most robust olfactory projections showed the lowest degree of laminar organization among prefrontal cortices. Early processing in the olfactory system thus takes place in areas which differ sharply on structural grounds from "early" eulaminate post-Rolandic sensory cortices. In addition to olfactory cortical projections, numerous labeled neurons in transitional (limbic) cortices were directed to orbital areas, and fewer but still substantial numbers of afferent neurons were found in eulaminate cortices. Unlike post-Rolandic unimodal sensory areas, which seems to be committed to the processing of input from one sensory modality via sequential and/or parallel pathways, caudal orbital areas received highly distributed input from primary olfactory areas, and in addition, from gustatory, visual, auditory and somatosensory areas. The structural and connectional features of olfactory recipient orbital cortices thus differ markedly from those observed in other sensory association areas and suggest a mode of processing adapted early in cortical evolution.

Animals↗
PubMed1995

Convergent evolution of amino acid usage in archaebacterial and eubacterial lineages adapted to high salt.

Chemical composition and physical properties of the total protein of Haloferax mediterranei, a halophilic archaebacterium requiring high salt concentration for growth, of Halomonas elongata, a halotolerant eubacterium able to grow at any concentration of salt, and of Escherichia coli B, a eubacterium related to H. elongata, unable to grow at high salt concentration, were compared using robust standard biochemical methods. The distribution of amino acid abundancies in the bulk protein from H. elongata was found to be intermediate between that from H. mediterranei and that from E. coli. The two high-salt-adapted organisms displayed an enrichment in aspartic acid and glutamic acid together with an impoverishment in lysine as compared to E. coli. This signature in amino acid usage is reflected in the charge distribution of proteins, as revealed by anion exchange chromatography of crude cell extracts. Since H. elongata diverged from H. mediterranei more than three billion years ago, the resemblance of their amino acid usages can be interpreted as a convergent imprint of their common habitats onto the chemical constitution of their proteins.

Archaea↗
PubMed2004

Competitive regulation of plant allometry and a generalized model for the plant self-thinning process.

Taking into account the individual growth form (allometry) in a plant population and the effects of intraspecific competition on allometry under the population self-thinning condition, and adopting Ogawa's allometric equation 1/y = 1/axb + 1/c as the expression of complex allometry, the generalized model describing the change mode of r (the self-thinning exponential in the self-thinning equation, log M = K + log N, where M is mean plant mass, K is constant, and N is population density) was constructed. Meanwhile, with reference to the changing process of population density to survival curve type B, the exponential, r, was calculated using the software MATHEMATICA 4.0. The results of the numerical simulation show that (1) the value of the self-thinning exponential, r, is mainly determined by allometric parameters; it is most sensitive to change of b of the three allometric parameters, and a and c take second place; (2) the exponential, r, changes continuously from about -3 to the asymptote -1; the slope of -3/2 is a transient value in the population self-thinning process; (3) it is not a 'law' that the slope of the self-thinning trajectory equals or approaches -3/2, and the long-running dispute in ecological research over whether or not the exponential, r, equals -3/2 is meaningless. So future studies on the plant self-thinning process should focus on investigating how plant neighbor competition affects the phenotypic plasticity of plant individuals, what the relationship between the allometry mode and the self-thinning trajectory of plant population is and, in the light of evolution, how plants have adapted to competition pressure by plastic individual growth.

Mathematical Computing↗
PubMed2006

Evolvability.

Explore the source record for details and available documents.

Adaptation, Biological↗
PubMed2005

Adaptive dynamics of Lotka-Volterra systems with trade-offs: the role of interspecific parameter dependence in branching.

We determine the adaptive dynamics of a general Lotka-Volterra system containing an intraspecific parameter dependency--in the form of an explicit functional trade-off between evolving parameters--and interspecific parameter dependencies--arising from modelling species interactions. We develop expressions for the fitness of a mutant strategy in a multi-species resident environment, the position of the singular strategy in such systems and the non-mixed second-order partial derivatives of the mutant fitness. These expressions can be used to determine the evolutionary behaviour of the system. The type of behaviour expected depends on the curvature of the trade-off function and can be interpreted in a biologically intuitive manner using the rate of acceleration/deceleration of the costs implicit in the trade-off function. We show that for evolutionary branching to occur we require that one (or both) of the traded-off parameters includes an interspecific parameter dependency and that the trade-off function has weakly accelerating costs. This could have important implications for understanding the type of mechanisms that cause speciation. The general theory is motivated by using adaptive dynamics to examine evolution in a predator-prey system. The applicability of the general theory as a tool for examining specific systems is highlighted by calculating the evolutionary behaviour in a three species (prey-predator-predator) system.

Algorithms↗
PubMed2004

IMGT-ONTOLOGY and IMGT databases, tools and Web resources for immunogenetics and immunoinformatics.

The international ImMunoGeneTics information system (IMGT; http://imgt.cines.fr), is a high quality integrated information system specialized in immunoglobulins (IG), T cell receptors (TR), major histocompatibility complex (MHC), and related proteins of the immune system (RPI) of human and other vertebrates, created in 1989, by the Laboratoire d'ImmunoGénétique Moléculaire (LIGM; Université Montpellier II and CNRS) at Montpellier, France. IMGT provides a common access to standardized data which include nucleotide and protein sequences, oligonucleotide primers, gene maps, genetic polymorphisms, specificities, 2D and 3D structures. IMGT consists of several sequence databases (IMGT/LIGM-DB, IMGT/MHC-DB, IMGT/PRIMER-DB), one genome database (IMGT/GENE-DB) and one 3D structure database (IMGT/3Dstructure-DB), interactive tools for sequence analysis (IMGT/V-QUEST, IMGT/JunctionAnalysis, IMGT/PhyloGene, IMGT/Allele-Align), for genome analysis (IMGT/GeneSearch, IMGT/GeneView, IMGT/LocusView) and for 3D structure analysis (IMGT/StructuralQuery), and Web resources ("IMGT Marie-Paule page") comprising 8000 HTML pages. IMGT other accesses include SRS, FTP, search by BLAST, etc. By its high quality and its easy data distribution, IMGT has important implications in medical research (repertoire in autoimmune diseases, AIDS, leukemias, lymphomas, myelomas), veterinary research, genome diversity and genome evolution studies of the adaptive immune responses, biotechnology related to antibody engineering (single chain Fragment variable (scFv), phage displays, combinatorial libraries) and therapeutical approaches (grafts, immunotherapy). IMGT is freely available at http://imgt.cines.fr.

Animals↗
PubMed2004

Detoxification of the cruciferous phytoalexin brassinin in Sclerotinia sclerotiorum requires an inducible glucosyltransferase.

The phytoalexins, brassinin, 1-methoxybrassinin and cyclobrassinin, were metabolized by the stem rot fungus Sclerotinia sclerotiorum into their corresponding glucosyl derivatives displaying no detectable antifungal activity. Importantly, co-incubation of S. sclerotiorum with camalexins, various phytoalexin analogs, and brassinin indicated that a synthetic camalexin derivative could slow down substantially the rate of brassinin detoxification. Furthermore, inducible brassinin glucosyltransferase (BGT) activity was detected in crude cell-free extracts of S. sclerotiorum. BGT activity was induced by the phytoalexin camalexin, and the brassinin analogs methyl tryptamine dithiocarbamate and methyl 1-methyltryptamine dithiocarbamate. The overall results suggest that the fungus S. sclerotiorum in its continuous adaptation and co-evolution with brassinin producing plants, has acquired efficient glucosyltransferase(s) that can disarm some of the most active plant chemical defenses.

Antifungal Agents↗
PubMed2004

Rheological properties of PLGA film-based implants: correlation with polymer degradation and SPf66 antimalaric synthetic peptide release.

This paper reports on the rheological properties of poly(D,L-lactic-co-glycolic acid) polymers (PLGA) dispersions used to form films and of the implants prepared by compression of SPf66 antimalaric peptide between several films, before application and during drug release. 25% PLGA (M(w)=48,000Da) dispersions in dichloromethane showed viscous Newtonian behaviour, being easy flowing and adaptable to the moulds. Evolution of viscoelastic properties, polymer molecular weight, and SPf66 release pattern from the implants immersed in various media was evaluated. Oscillatory shear test showed that freshly prepared implants have an elastic modulus, G', greater than the viscous modulus, G", being both practically independent of angular frequency. After 6 weeks immersion in a pH 7.4 phosphate buffer, G' and G" increased in almost one order of magnitude, despite of a significant polymer degradation. Polymer molecular weight decreased slowly during the first 10 days of immersion (a similar pattern was obtained at pHs 2 and 7.4) and then the degradation process accelerated (degradation index on day 7 equals to 0.89, and on day 14 equals to 16.5). SPf66 release profile followed a pattern similar to that of the polymer degradation index. These observations are explained in terms of changes in polymer structure and conformation that happen in the implant.

Absorbable Implants↗
PubMed2002

IMGT, the international ImMunoGeneTics database: a high-quality information system for comparative immunogenetics and immunology.

IMGT, the international ImMunoGeneTics database (http://imgt.cines.fr), is a high quality integrated information system specializing in Immunoglobulins (IG), T cell Receptors (TR) and Major Histocompatibility Complex (MHC) of human and other vertebrates, created in 1989, by LIGM, at the Université Montpellier II, CNRS, Montpellier, France. IMGT provides a common access to standardized data, which include nucleotide and protein sequences, oligonucleotide primers, gene maps, genetic polymorphisms, specificities, 2D and 3D structures. IMGT includes several databases (IMGT/LIGM-DB, IMGT/HLA-DB, IMGT/3Dstructure-DB), Web resources ('IMGT Marie-Paule page') which comprise IMGT Scientific Chart, IMGT Repertoire, IMGT Bloc-notes, IMGT Education, IMGT Aide-mémoire and IMGT Index, and interactive tools (IMGT/V-QUEST, IMGT/JunctionAnalysis). These expertly annotated data on the genome, proteome, genetics and structure of the IG, TR and MHC are of high value for comparative genome evolution studies of the adaptative immune response.

Animals↗
PubMed2000

Transgenic organisms in evolutionary ecology.

Evolutionary ecology aims to understand how phenotypes are designed for reproductive success and survival. Perhaps the most powerful approach towards this goal is to alter a character genetically and observe the resulting change in reproduction, survival, growth, defense or competitive ability. Until recently, this strategy was not practical. Transgenic manipulation now offers a solution - novel genes are introduced into the germ line and are then expressed in the developing organism. This technique is already available in model and agricultural organisms. The challenge for molecular evolutionary ecologists is to find ways to adopt these powerful systems to understand the mechanisms underlying adaptive traits and their evolution.

Journal Article↗