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At least 1,495 records · Page 83Linked to original sources
PubMed2004

Characterization of a novel chronic photothrombotic ring stroke model in rats by magnetic resonance imaging, biochemical imaging, and histology.

A novel photothrombotic ring stroke model was characterized by multiparametric magnetic resonance imaging, imaging of cerebral blood flow (CBF), adenosine triphosphate (ATP), pH, and histology. Ischemia was initiated by transosseous irradiation of a predefined brain area intravenously perfused by the photosensitive dye erythrosin B in male Wistar rats. In the region of the primary ring-lesion, the phototoxic reaction caused necrosis reflected by low relative ATP levels (28 +/- 15%), alkalosis (pH: 7.35 +/- 0.50), and histologic evidence at 14 days after lesion induction. In the ring-encircled interior region (region-at-risk), spontaneous tissue reperfusion (relative CBF: 93 +/- 3%) enabled partial tissue preservation. This was demonstrated by a less impaired energy metabolism (ATP: 65 +/- 23%), normal pH (7.01 +/- 0.50), and still normal cellular structures shown by histologic staining. Analysis of the temporal characteristics within the region-at-risk revealed a slow continuous increase of the apparent diffusion coefficient of water (ADC) to 144 +/- 16% of control (14d) and an early vasogenic edema, reflected by an increase of the T2 relaxation time to 143 +/- 17% of control (2d). Both final ADC and T2 correlated well with the tissue pH within the region-at-risk, thus emphasizing the usefulness of this multiparametric noninvasive imaging approach.

Adenosine Triphosphate↗
PubMed1994

Control of rotating waves in cardiac muscle: analysis of the effect of an electric field.

The effect of an electric field on rotating waves in cardiac muscle is considered from a theoretical point of view. A model of excitation propagation taking into account the cellular structure of the heart is presented and studied. The application of a direct current electric field along the cardiac tissue is known to induce changes in membrane potential which decay exponentially with distance. Investigation of the model shows that the electric field induces a gradient of potential inside a cell which does not decay with distance, and results in modification of excitation propagation which extends a considerable distance from the electrodes. In two dimensions, it induces a drift of rotating waves. The effect of the electric field on propagation velocity and on rotating waves cannot be obtained in any arbitrary models of cardiac muscle. For an electric field of about 1 V cm-1 and junctional resistances of about 20 M omega, the change in velocity of propagation can be up to several percent, resulting in a drift velocity of rotating waves of the order of 1 cm s-1. To test these predictions, experiments with cardiac preparations are proposed.

Animals↗
PubMed2000

Accumulation of polyphosphate granules in Helicobacter pylori cells under anaerobic conditions.

Helicobacter pylori is known to transform to coccoid forms which might be involved in faecal-oral transmission. When the bacteria enter the intestine, they encounter anaerobiosis that is unfavourable for growth. The effect of anaerobiosis was investigated to determine whether H. pylori is viable under such conditions. H. pylori in the late logarithmic growth phase transformed from spiral to coccoid forms when transferred to and incubated anaerobically in fresh medium. Acridine orange staining indicated that the viability of coccoid forms was significantly reduced, but still measurable even at day 5 or 7 of anaerobic culture. The cells retained low but significant levels of the major sigma factor RpoD at day 5 or 7 of anaerobic culture. The cellular structures of coccoid forms contained polyphosphate granules at day 1 and even at day 7 when incubated anaerobically, whereas only a few granules were observed under micro-aerobic conditions. Poor formation of polyphosphate granules in micro-aerobic cultures correlated particularly well with lower levels of acridine orange staining. These results suggest that acridine orange-positive anaerobic coccoid forms are viable to a certain extent and that polyphosphate may support this viability.

Acridine Orange↗
PubMed1987

Enterovirus replication in porcine ileal explants.

Organ explants of porcine ileum were cultured in different media for up to 48 h. Tissue preservation was evaluated by light microscopy and by transmission and scanning electron microscopy. Cellular structure was well maintained after incubation for 48 h in CMRL-1066 supplemented with insulin and cortisone. Explants of absorptive or lymphoid tissue from young or adult pigs were incubated with either coxsackievirus B5 (which is infectious for swine) or human poliovirus type 1 (which served as a control) for 24 h at 37 degrees C. Progeny virus was detected by plaque assay. Replication was most evident in the absorptive tissue explants from young pigs. In tissues from adults, replication occurred equally well in absorptive and lymphoid tissues. Infection in explants was inefficient, and the yield of progeny virus was low.

Animals↗
PubMed1997

Characterization of the vaccinia virus F8L protein.

Vaccinia virus infection dramatically affects the host actin cytoskeleton by inducing disassembly of actin stress fibres and formation of actin tails which propel the virus intra- and intercellularly. The viral factors responsible for these actin rearrangements remain unknown. Sequence analysis reveals significant homology between the vaccinia F8L ORF and the proline repeats of iActA, the protein which initiates actin tail assembly and motility in the bacterial pathogen Listeria ivanovii. We characterized the F8L gene product to examine its possible role in vaccinia rearrangements of the host actin cytoskeleton. F8L is a approximately 8 kDa protein expressed early during infection and is found throughout the cytoplasm, with no discernible association with viral or cellular structures. Furthermore, the F8L deletion strain, WR deltaF8L, forms particles and actin tails indistinguishable from WR. Our observations demonstrate that F8L is not required for vaccinia virus morphogenesis or the actin rearrangements observed during infection.

Actin Cytoskeleton↗
PubMed1986

Electronmicroscopy studies on the bactericidal action of inflammatory leukocytes in murine salmonellosis.

Inbred female C3H mice were given 2 X 10(7) cfu virulent Salmonella typhimurium by intraperitoneal injection. Peritoneal washings were harvested between 3 h and 72 h after infection and examined by electronmicroscopy. There was evidence of intracellular killing by polymorphs and macrophages. The degeneration of intracellular salmonellae was seen initially as enlarging central electron-lucent areas in the cytoplasm and peripheral condensation of cytoplasmic granules, followed by disruption of the bacterial envelope and disintegration of cellular structure. Alternatively, the initial injury appeared as an irregular and discontinuous bacterial envelope with compression of the bacterium and diffuse condensation of cytoplasmic granules. It was also evident that virulent salmonellae multiplied extracellularly in the peritoneal cavity of the infected mice.

Animals↗
PubMed2000

Shear-thinning-induced chaos in taylor-couette flow

The effect of weak shear thinning on the stability of the Taylor-Couette flow is explored for a Carreau-Bird fluid in the narrow-gap limit. The Galerkin projection method is used to derive a low-order dynamical system from the conservation of mass and momentum equations. In comparison with the Newtonian system, the present equations include additional nonlinear coupling in the velocity components through the viscosity. It is found that the critical Taylor number, corresponding to the loss of stability of the base (Couette) flow, becomes lower as the shear-thinning effect increases. That is, shear thinning tends to precipitate the onset of Taylor vortex flow. Similar to Newtonian fluids, there is an exchange of stability between the Couette and Taylor vortex flows, which coincides with the onset of a supercritical bifurcation. However, unlike the Newtonian model, the Taylor vortex cellular structure loses its stability in turn as the Taylor number reaches a critical value. At this point, a Hopf bifurcation emerges, which exists only for shear-thinning fluids.

Journal Article↗
PubMed2002

Design degrees of freedom and mechanisms for complexity.

We develop a discrete spectrum of percolation forest fire models characterized by increasing design degrees of freedom (DDOF's). The DDOF's are tuned to optimize the yield of trees after a single spark. In the limit of a single DDOF, the model is tuned to the critical density. Additional DDOF's allow for increasingly refined spatial patterns, associated with the cellular structures seen in highly optimized tolerance (HOT). The spectrum of models provides a clear illustration of the contrast between criticality and HOT, as well as a concrete quantitative example of how a sequence of robustness tradeoffs naturally arises when increasingly complex systems are developed through additional layers of design. Such tradeoffs are familiar in engineering and biology and are a central aspect of the complex systems that can be characterized as HOT.

Journal Article↗
PubMed2003

Pattern formation on the edge of chaos: experiments with CO oxidation on a Pt(110) surface under global delayed feedback.

Experiments with catalytic oxidation of carbon monoxide on Pt(110) show that chemical turbulence in this system can be suppressed by application of appropriate global delayed feedback. Different spatiotemporal patterns, seen near the transition from turbulence to uniform oscillations, are investigated. Such patterns include intermittent turbulence, oscillatory standing waves, cellular structures, and phase clusters. Using a method based on the Hilbert transform, spatial distributions of local phase and amplitude in these patterns are reconstructed from the experimental data.

Journal Article↗
PubMed2003

Convective instability of an acidity front in Hele-Shaw cells.

Density fingering arising in the acid-catalyzed chlorite-tetrathionate reaction is investigated experimentally in Hele-Shaw cells of various thickness. Upward propagating chemical fronts are stable for all gapwidths examined. The initial evolution of the downward propagating planar fronts resulting in a cellular structure has been characterized by dispersion curves and it is found that the convectively unstable regime increases as the gapwidth increases. From the dispersion curves, the change in the characteristics of the most unstable mode and in the marginal wave number, separating the stable and unstable modes, is determined quantitatively.

Journal Article↗
PubMed2004

Cell size distribution in random tessellations of space.

Random subdivisions in a D-dimensional Euclidean space are commonly observed in many scientific fields, such as metallurgy, geology, biology, and even, in the case of large D, in subjects related to information codification. This paper presents an analytical approximation of the size probability distribution in space subdivisions generated by random point processes, which include the well-known cases of the Poisson-Voronoi and the Johnson-Mehl cellular structures. Based on the calculations of Ann. Math. Stat. 33, 958 (1962)] and an assumption for the distribution shape, the cell size distributions are obtained in a general way for a very wide range of random space subdivisions.

Journal Article↗
PubMed2006

Linear relation on the correlation in complex networks.

Correlation in complex networks follows a linear relation between the degree of a node and the total degrees of its neighbors for six different classes of real networks. This general linear relation is an extension of the Aboav-Weaire law in two-dimensional cellular structures and provides a simple and different perspective on the correlation in complex networks, which is complementary to an existing description using Pearson correlation coefficients and a power law fit. Analytical expression for this linear relation for three standard models of complex networks: the Erdos-Renyi, Watts-Strogatz, and Barabasi-Albert networks is provided. The slope and intercept of this linear relation are described by a single parameter a together with the first and second moment of the degree distribution of the network. The assortivity of the network can be related to the sign of the intercept.

Journal Article↗
PubMed2006

Theory of 2 delta-kicked quantum rotors.

We examine the quantum dynamics of cold atoms subjected to pairs of closely spaced delta kicks from standing waves of light and find behavior quite unlike the well-studied quantum kicked rotor (QKR). We show that the quantum phase space has a periodic, cellular structure arising from a unitary matrix with oscillating bandwidth. The corresponding eigenstates are exponentially localized, but scale with a fractional power L is less similar to h(-0.75), in contrast to the QKR for which L is less similar to h(-1). The effect of intercell (and intracell) transport is investigated by studying the spectral fluctuations with both periodic as well as "open" boundary conditions.

Journal Article↗
PubMed2000

Buckling instabilities of one-layered growing tissues.

Growth and folding in one-layered model tissue sheets are studied in a stochastic, lattice-free single cell model which considers the discrete cellular structure of the tissue, and in a coarse grained analytical approach. The polarity of the one-layered tissue is considered by a bending term. Cell division gives rise to a locally increasing metric. An exponential and a power-law growth regime are identified. In both regimes, folding occurs as soon as the bending contribution becomes too small to compensate the destabilizing effect of the cell proliferation. The potential biological relevance is discussed.

Algorithms↗
PubMed2001

Unstable step meandering with elastic interactions.

We report on theoretical investigations of the influence of step interactions due to elasticity on unstable step meandering during molecular beam homoepitaxy. It is shown that elasticity causes coarsening of the cellular structure of the meander found in a previous work. The time dependence of step roughness is found to be robust, behaving as t(1/2). The lateral length scale coarsening is shown to be sensitive to the underlying physical mechanisms. In particular, the typical length follows the law t(alpha), with alpha = 1/6 or 1/4 depending on whether line diffusion is negligibly small or not.

Journal Article↗
PubMed2002

Nanostructured cellular networks.

Au nanocrystals spin-coated onto silicon from toluene form cellular networks. A quantitative statistical crystallography analysis shows that intercellular correlations drive the networks far from statistical equilibrium. Spin-coating from hexane does not produce cellular structure, yet a strong correlation is retained in the positions of nanocrystal aggregates. Mechanisms based on Marangoni convection alone cannot account for the variety of patterns observed, and we argue that spinodal decomposition plays an important role in foam formation.

Cell Aggregation↗
PubMed2004

Optical microrheology using rotating laser-trapped particles.

We demonstrate an optical system that can apply and accurately measure the torque exerted by the trapping beam on a rotating birefringent probe particle. This allows the viscosity and surface effects within liquid media to be measured quantitatively on a micron-size scale using a trapped rotating spherical probe particle. We use the system to measure the viscosity inside a prototype cellular structure.

Calcium Carbonate↗
PubMed2005

ARABINAN DEFICIENT 1 is a putative arabinosyltransferase involved in biosynthesis of pectic arabinan in Arabidopsis.

The function of a putative glycosyltransferase (At2g35100) was investigated in Arabidopsis (Arabidopsis thaliana). The protein is predicted to be a type 2 membrane protein with a signal anchor. Two independent mutant lines with T-DNA insertion in the ARABINAN DEFICIENT 1 (ARAD1) gene were analyzed. The gene was shown to be expressed in all tissues but particularly in vascular tissues of leaves and stems. Analysis of cell wall polysaccharides isolated from leaves and stems showed that arabinose content was reduced to about 75% and 46%, respectively, of wild-type levels. Immunohistochemical analysis indicated a specific decrease in arabinan with no change in other pectic domains or in glycoproteins. The cellular structure of the stem was also not altered. Isolated rhamnogalacturonan I from mutant tissues contained only about 30% of the wild-type amount of arabinose, confirming the specific deficiency in arabinan. Linkage analysis showed that the small amount of arabinan present in mutant tissue was structurally similar to that of the wild type. Transformation of mutant plants with the ARAD1 gene driven by the 35S promoter led to full complementation of the phenotype, but none of the transformants had more arabinan than the wild-type level. The data suggest that ARAD1 is an arabinan alpha-1,5-arabinosyltransferase. To our knowledge, the identification of other L-arabinosyltransferases has not been published.

Arabidopsis↗