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Routing of spike series by dynamic circuits in the hippocampus.

Recurrent inhibitory loops are simple neuronal circuits found in the central nervous system, yet little is known about the physiological rules governing their activity. Here we use simultaneous somatic and dendritic recordings in rat hippocampal slices to show that during a series of action potentials in pyramidal cells recurrent inhibition rapidly shifts from their soma to the apical dendrites. Two distinct inhibitory circuits are sequentially recruited to produce this shift: one, time-locked with submillisecond precision to the onset of the action potential series, transiently inhibits the somatic and perisomatic regions of pyramidal cells; the other, activated in proportion to the rate of action potentials in the series, durably inhibits the distal apical dendrites. These two operating modes result from the synergy between pre- and postsynaptic properties of excitatory synapses onto recurrent inhibitory neurons with distinct projection patterns. Thus, the onset of a series of action potentials and the rate of action potentials in the series are selectively captured and transformed into different spatial patterns of recurrent inhibition.

Action Potentials↗

Mussel disturbance dynamics: signatures of oceanographic forcing from local interactions.

Local interactions, biotic and abiotic, can have a strong influence on the large-scale properties of ecosystems. However, ecological models often explore the influence of local biotic interactions where physical disturbance is included as a large-scale and imposed source of variability but is not allowed to interact with biotic processes at the local scale. In marine intertidal communities dominated by mussels, wave disturbances create gaps in the mussel bed that recover through a successional sequence. We present a lattice model of mussel disturbance dynamics that allows local interactions between wave disturbance and mussel recolonization, in which each cell of the lattice can be empty, occupied by a mussel bed element, or disturbed (which corresponds to a newly disturbed cell that has unstable edges). As in natural ecosystems, wave disturbance can also spread from disturbed to adjacent occupied cells, and recolonization can also spread from occupied to adjacent empty cells. We first validate the local rules from artificial gap experiments and from natural gap monitoring along the Oregon coast. We analyze the properties of the model system as a function of different oceanographic forcings of productivity and disturbance. We show that the mussel bed can go through phase transitions characterized by a large sensitivity of mussel cover and patterns to oceanographic forcings but also that criticality (scale invariance) is observed over wide ranges of parameters, which suggests self-organization. We also show that spatial patterns in the intertidal can provide a robust signature of local processes and can inform about oceanographic regimes. We do so by comparing the large-scale patterns of the simulation (scaling exponents) with field data, which suggest that some experimental sites are close to criticality. Our results suggest that regional patterns in disturbed populations can be explained by local biotic and abiotic processes submitted to oceanographic forcing.

Animals↗

LMX1B transactivation and expression in nail-patella syndrome.

Lmx1b, a member of the LIM homeodomain protein family, is essential for the specification of dorsal limb fates at the zeugopodal and autopodal level in vertebrates. We and others have shown that a skeletal dysplasia, nail-patella syndrome (NPS), results from mutations in LMX1B. While it is a unique mesenchymal determinant of dorsal limb patterning during vertebrate development, the mechanism by which LMX1B mutations generate the NPS phenotype has not been addressed at a transcriptional level or correlated with its spatial pattern of gene expression. In this study, in situ hybridizations of Lmx1b on murine limb sections reveal strong expression in dorsal mesenchymal tissues (precursors of muscle, tendons, joints and patella) and, interestingly, also in anterior structures of the limb, explaining the anterior to posterior gradient of joint and nail dysplasia observed in NPS patients. Transfection studies showed that both the LIM domain-interacting protein, LDB1, and the helix-loop-helix protein, E47/shPan1, can regulate LMX1B action. While co--transfections of E47/shPan1 with LMX1B result in a synergistic effect on reporter activity, LDB1 down-regulated LMX1B-mediated transactivation irrespective of E47/shPan1. Mutant LMX1B proteins containing human mutations affecting each of the helices or the N-terminal arm of the homeodomain abolished transactivation, while LIM B and truncation mutations retained residual activity. These mutations fail to act in a dominant-negative manner on wild-type LMX1B in mixing studies, thereby supporting haploinsufficiency as the mechanism underlying NPS pathogenesis.

Animals↗

[Influence of shelterbelts structure on snow distribution pattern in shelternets in Northeast China].

The amount of snow that falls in farmland during winter in Northeast China is the important source of soil water in farmland, so the influence of shelterbelt structure on snow distribution pattern is the key problem in order to adjust structure of shelterbelts according to porosity in management practice. Based on snow depths in shelternets composed of shelterbelts with three levels of porosity, which were shelternet No. 1, shelternet No. 2, and shelternet No. 3, the snow distribution patterns in farmland were studied. The results showed that the structure of shelternet had great influence on snow distribution in farmland. With different levels of porosities, spatial pattern of snow distribution were obviously different in three shelternets. The more variant in porosity, the more obvious difference in snow distribution pattern, and the best uniformity of snow distribution appeared in shelternet with porosity of phi 2w = 0.579, phi 2s = 0.268, in which snow depth in farmland was relative even and the variability of snow depth was the least. Consequently, the relationship of porosity of shelterbelt with snow distribution pattern could be used to guide structure adjustment and optimization management of shelterbelts.

Agriculture↗

Molecular analysis of the neurogenic locus Enhancer of split of Drosophila melanogaster.

Enhancer of split [E(spl)], one of the neurogenic loci of Drosophila, is located in bands 96F8-13. One hundred and fifty kilobases of genomic DNA, spanning the E(spl) locus, were cloned by chromosomal walking. DNA heterogeneities associated with eleven E(spl) mutations, including three Pr alleles, were mapped to a region of 36 kb, and an additional one outside of this region. One of these mutations is a deletion of 34 kb that causes severe neural hyperplasia of homozygous embryos with complete penetrance. Mutations associated with DNA polymorphisms mapping within smaller regions do not lead to a fully penetrant neurogenic phenotype. The 36-kb region encodes 11 major transcripts, which exhibit distinct temporal and/or spatial patterns of expression. The expression of one of these transcripts is modified in two different mutants. In addition, one of the mutants [E(spl)] shows another transcript, which is not present in the wild-type and co-exists with the remaining transcripts. We suggest that more than one of the 11 transcripts are necessary for a normal function of the E(spl) locus. The spatial distribution of four of these RNAs, which exhibit almost identical patterns of expression, strongly suggests that the encoded proteins are required for the process of segregation of neural and epidermal lineages.

Journal Article↗

The role of geographic analysis in locating, understanding, and using plant genetic diversity.

The genetic structure of an organism is shaped by various factors, many of which vary significantly over space. In this chapter, we provide insight on how studying geographic patterns may contribute to an improved understanding of variability in genetic structure. We first review the theoretical background on how differences in genetic structure may be generated through processes that are inherently variable over space. We then present novices with some basics on how geographic information systems (GIS) may be adopted to study this variation, including advice on software, data, and the type of research questions that might be addressed. The chapter finishes with a brief review of how spatial analysis has contributed to the conservation and use of plant genetic resources, through an understanding of spatial patterns in species distribution and genetic structure. We conclude that spatial variation is a factor often overlooked in genetic studies and one that merits greater consideration. With the advent of functional genomics and improved quantification of adaptive traits, spatial analysis may be key in understanding variation in genetic structure through careful analysis of genotype-environment interactions.

Algorithms↗

Embryonic development of the Drosophila brain. II. Pattern of glial cells.

Glial cells in Drosophila and other insects are organized in an outer layer that envelops the surface of the central and peripheral nervous system (subperineurial glia, peripheral glia), a middle layer associated with neuronal somata in the cortex (cell body glia), and an inner layer surrounding the neuropile (longitudinal glia, midline glia, nerve root glia). In the ventral nerve cord, most glial cells are formed by a relatively small number of neuro-glioblasts; subsequently, glial cell precursors migrate and spread out widely to reach their final destination. By using a glia-specific marker (antibody against the Repo protein) we have reconstructed the pattern of glial cell precursors at successive developmental stages, focusing on the glia of the supraesophageal ganglion and subesophageal ganglion which are not described in previous studies. Digitized images of consecutive optical sections were used to generate 3-D models that show the spatial pattern of glial cell precursors in relationship to the neuropile, brain surface, and peripheral nerves. Similar to their spatial organization in the ventral nerve cord, glial cells of the brain populate the brain nerves and outer surface, cortical cell body layer, and cortex-neuropile interface. Neuropile-associated glial cells arise from a cluster located at the base of the supraesophageal ganglion; from this position, they migrate dorsally along the developing axon tracts and by late embryonic stages form a sheath around all neuropile compartments, including the supraesophageal commissure. Surface and cell body glial cells derive from several discrete foci, notably two large clusters at the deuterocerebrum/protocerebrum boundary and the posterior protocerebrum. From these foci, glial cells then fan out to envelop the surface of the supraesophageal ganglion.

Animals↗

Brain nitric oxide synthase expression in the developing ferret lateral geniculate nucleus: analysis of time course, localization, and synaptic contacts.

Nitric oxide (NO) is a diffusible neurotransmitter that has been implicated in key developmental events, including the refinement of retinogeniculate axons into ON/OFF sublayers in the ferret lateral geniculate nucleus (LGN), and in the formation of eye-specific laminae in other species. To understand the role of NO in the LGN, it is critical to fully characterize the pattern of brain nitric oxide synthase (bNOS) expression within the nucleus, including the phenotype of the neural elements that express it. We have examined the temporal and spatial pattern of bNOS expression in the ferret LGN during the first 6 weeks of postnatal development, and in the adult, by detecting bNOS with a monoclonal antibody as well as beta-nicotinamide adenine dinucleotide phosphate-diaphorase histochemistry. We have found that bNOS is expressed in neurons in the A laminae of the LGN as early as postnatal day 7 (P7), a time coincident with eye-specific segregation of retinal axons. This expression continues through P35, with peak somatodendritic expression at P21. Fluorescent double labeling using antibodies to bNOS and glutamic acid decarboxylase indicate that bNOS is expressed in gamma-aminobutyric acid-ergic interneurons within the A laminae. Electron microscopic examination of bNOS-labeled cells showed synaptic contacts from terminals with two distinct morphologic profiles. Expression of bNOS within interneurons that receive contacts from multiple sources indicates that the synaptic circuitry associated with bNOS activation and the potential targets of NO may be more complex than originally thought and supports a potential new role for interneurons as cellular intermediaries in the refinement of pathways in the LGN. Our findings broaden the window of time that bNOS may be active within the developing LGN, suggesting an expanded role for NO during early postnatal development.

Animals↗

The sensory projections of Drosophila mutants which show abnormal wing formation or flying behavior.

The central projection pattern of sensory neurones from the wing of Drosophila melanogaster arise from a small number of differentiated cell types which are localized in a precise and reproducible spatial pattern. We report here the distribution of the nerve pathways revealed by filling with peroxidase and the structure and number of the wing sensory receptors, in flies which have wings but which nevertheless are flightless, including one which presents abnormal wing formation. Our results indicate that in dumpy and taxi mutants, there are no detectable modifications in the neural projections or in the number and morphology of sensory receptors. Vestigial mutants however, present several alterations including the absence of the ovoid projection, a fact consistent with the existence of very few marginal bristles. The projection of the large companiform sensilla branch profusely along the ventromedial tract and more sensory fibers cross the midline in the mesothorax. Wings of vestigial mutants show a decrease in the number of large campaniform sensilla, and more importantly some receptors present abnormally oriented trichomes in the neighboring cells.

Afferent Pathways↗

Fluoro-jade identification of cerebellar granule cell and purkinje cell death in the alpha1A calcium ion channel mutant mouse, leaner.

Cell death is a critical component of normal nervous system development; too little or too much results in abnormal development and function of the nervous system. The leaner mouse exhibits excessive, abnormal cerebellar granule cell and Purkinje cell death during postnatal development, which is a consequence of a mutated calcium ion channel subunit, alpha(1A). Previous studies have shown that leaner cerebellar Purkinje cells die in a specific pattern that appears to be influenced by functional and anatomical boundaries of the cerebellum. However, the mechanism of Purkinje cell death and the specific timing of the spatial pattern of cell death remain unclear. By double labeling both leaner and wild-type cerebella with Fluoro-Jade and terminal deoxynucleotide transferase-mediated, deoxyuridine triphosphate nick-end labeling or Fluoro-Jade and tyrosine hydroxylase immunohistochemistry we demonstrated that the relatively new stain, Fluoro-Jade, will label neurons that are dying secondary to a genetic mutation. Then, by staining leaner and wild-type cerebella between postnatal days 20 and 80 with Fluoro-Jade, we were able to show that Purkinje cell death begins at approximately postnatal day 25, peaks in the vermis about postnatal day 40 and in the hemispheres at postnatal day 50 and persists at a low level at postnatal day 80. In addition, we showed that there is a significant difference in the amount of cerebellar Purkinje cell death between rostral and caudal divisions of the leaner cerebellum, and that there is little to no Purkinje cell death in the wild type cerebellum at the ages we examined. This is the first report of the use of Fluoro-Jade to identify dying neurons in a genetic model for neuronal cell death. By using Fluoro-Jade, we have specifically defined the temporospatial pattern of postnatal Purkinje cell death in the leaner mouse. This information can be used to gain insight into the dynamic mechanisms controlling Purkinje cell death in the leaner cerebellum.

Animals↗

Fuzzy segmentation spatiotemporal patterns of cognitive potential into microstates.

Fuzzy c-mean algorithm was applied to segment spatiotemporal patterns of brainwave into microstates and memberships. The optimal clustering number was estimated with both the trends of objective function and the eigenvalue number of microstates. Comparable spatial patterns may occur at different temporal moments in consideration of fuzzy index that is beyond the limit of serial processing. Those techniques were illustrated with multichannel event-related potentials recorded from 9 subjects during Stroop test. Statistical parametric map of F value suggested that significant task (color decision and word decision) effect involve widespread cortical regions after stimulus onset 280 ms and this result supports the hypothesis that Stroop interference derives from response competition during post-perception stage. As significant stimulus (congruent stimulus and incongruent stimulus) effect only involves several separate visual regions within 100 ms after stimulus presentation, it may reflect top-down attentional regulation.

Algorithms↗

Age-related distribution of cones and ON-bipolar cells in the rd mouse retina.

PURPOSE: Retinal dystrophic (rd) mice lose most of their rod photoreceptors within the first three weeks after birth. We determined the age-related distribution of peanut agglutinin lectin (PNA)-labeled cones during the first 12 months of age. We also investigated whether the density of ON-bipolar cells expressing L7 protein was affected by their loss of photoreceptor inputs. METHODS: rd mice were selected from a transgenic strain which expresses an L7-beta-galactosidase fusion gene localized to ON-bipolar cells. Cones were stained with PNA and ON-bipolar cells with bluo-gal (halogenated indolyl-beta-D-galactoside). Retinas were flat-mounted and observed at 1, 2, 3, 6 and 12 months of age. RESULTS: PNA-labeled cones are distributed unevenly across the retina at 1 month postnatal. Their concentration decreases first in the central and far peripheral retina, leaving a ring of labeled cells in the midperipheral region. At 3 months, a larger patch of cones remains in the supero-temporal midperipheral region and a smaller patch in the infero-nasal retina. By 6 months, few cones remain in the infero-nasal retina; by 1 year approximately 100 cones remain in the entire retina, localized to the superior midperipheral region. ON-bipolar cells appear evenly distributed at 1 month. By 2-3 months, relatively more bluo-gal staining is seen in the midperipheral regions underlying dense cone populations. At 6-12 months, bluo-gal label is distributed in a spotty pattern with little or no staining seen in areas of apparent neovascularization. CONCLUSIONS: (1) PNA-labeling of cones in the rd retina deteriorates in a distinct spatial pattern with the longest cone survival in the midperipheral superior retina. (2) ON-bipolar cells are more densely labeled in regions of high cone density during the early months of cone degeneration and, in later stages, show relative decreases in regions of apparent neovascularization.

Age Factors↗

Expression and embryonic function of empty spiracles: a Drosophila homeo box gene with two patterning functions on the anterior-posterior axis of the embryo.

Using the even-skipped homeo box as a probe to identify diverged homeo box genes in the Drosophila genome, we isolated the empty spiracles (ems) gene. Structural and functional comparisons between ems and other embryonic patterning genes of Drosophila suggest that ems acts, in part, as a homeotic selector gene, specifying the identity of some of the most anterior head segments. Mutant embryos lacking ems protein have severe patterning defects in the anterior head and are missing tracheal structures, including the filzkörper, which are normally developed by the eighth abdominal segment. ems has two different spatial patterns of expression during embryogenesis. The early, head-specific pattern consists of a single anterior stripe at the syncytial and cellular blastoderm stages. The later, metameric pattern consists of bilateral patches of ems expression in neural and ectodermal cells of every head and body segment. Variations of the ems expression pattern in bicoid mutants suggests that the morphogen protein produced by bicoid has a concentration-dependent regulatory role in the establishment of head-specific ems expression. In contrast, the metameric ems pattern is initiated independently of bicoid protein, and ems becomes expressed at high levels in the primordia of the duplicated fïlzkörper that develop in the anterior half of bicoid mutant embryos.

Amino Acid Sequence↗

Spontaneous pattern formation in an effectively one-dimensional dielectric-barrier discharge system

In a dielectric-barrier discharge between diametrically opposite sides of a narrow tube, discharge filaments stabilize at regular intervals along the tube's length. Three types of periodic patterns are observed, as is a disordered state in which filaments fire at apparently random positions and times. Time-resolved current measurements indicate that for each spatial pattern, a particular number of discharge stages occur during the voltage half-cycle. A preliminary model of the pattern-formation dynamics is described, motivating further work on time-resolved imaging and investigations of surface charge distributions.

Journal Article↗

Relaxation to equilibrium can be hindered by transient dissipative structures.

Relaxation processes in a closed chemical reaction-diffusion system which can potentially form Turing-like patterns during the transient are investigated to address the question given by the title. We find that when certain conditions are fulfilled the relaxation process is indeed drastically hindered, once the pattern is formed. This slowing down is shown to be due to stepwise relaxation, where each plateau in the relaxation process corresponds to residence at a certain spatial pattern. Mechanism and universality of the phenomena are discussed.

Journal Article↗

Wave similarity mapping shows the spatiotemporal distribution of fibrillatory wave complexity in the human right atrium during paroxysmal and chronic atrial fibrillation.

INTRODUCTION: The complexity of waveforms during atrial fibrillation may reflect critical activation patterns for the arrhythmia perpetuation. In this study, we introduce a novel concept of map, based on the analysis of the wave morphology, which gives a direct evidence in the human right atrium on the spatiotemporal distribution of fibrillatory wave complexity in paroxysmal (PAF) and chronic (CAF) atrial fibrillation. METHODS AND RESULTS: Electrograms were recorded from a 64-electrode catheter in the right atrium of 15 patients during PAF (n = 8) and CAF (n = 7). Wave similarity maps were constructed by calculating the degree of morphological similarity of activation waves (S) at each atrial site and by following its temporal evolution. During PAF the spatiotemporal distribution of the waveforms was highly consistent across the subjects and was determined by the anatomic location. Wave similarity maps showed the existence of an extended area with low similarity index, which covered the low posteroseptal atrium (S = 0.28 +/- 0.09) and the septal region (S = 0.22 +/- 0.04), and the presence of a large tongue with high similarity index, which penetrated the lateral wall (S = 0.55 +/- 0.08) starting from the high anterolateral atrium (S = 0.54 +/- 0.06). A completely different spatiotemporal pattern was seen during CAF. No distinct regions with different similarity indexes were recognized, but a uniformly distributed low similarity index (S = 0.27 +/- 0.07) was found. The spatial pattern was highly stable in time with fluctuations of S < 0.04. CONCLUSION: Quantification of the spatiotemporal distribution of fibrillatory wave complexity is feasible in humans by wave similarity mapping. Anatomic anchoring of waveforms during PAF and pattern destruction during CAF was determined.

Adult↗

Overview: Synchronization and patterns in complex systems.

The theory of complex systems, such as neural assemblies or lattices of chaotic oscillators has generated many new problems including the synchronization or regularization of the cooperative behavior of systems consisting of chaotic elements, regular spatial patterns in "chaotic" lattices, and so on. A number of these problems were discussed at the International School in Nonlinear Science-95 (Nizhniy Novgorod, Russia). In this overview we try to formulate some of the most interesting problems that were discussed at that meeting. (c) 1996 American Institute of Physics.

Journal Article↗

Lead and zinc in the Wallsend Burn, an urban catchment in Tyneside, UK.

This paper examines lead and zinc concentrations in topsoils and stream sediments of public access areas in an urban catchment in Tyneside, UK. It examines the extent and severity of metal contamination, explores spatial patterns in relation to urban and industrial development, and makes inferences about potential metal mobility. Total and acetic-acid extractable lead and zinc concentrations, organic content and pH were determined on 121 topsoil and 22 stream sediment samples using standard laboratory procedures. Using the lowest trigger thresholds for total lead and zinc, almost 75% and 91%, respectively, of topsoil samples were classified as contaminated; proportions were rather lower for acetic acid extractable metals. Similarly, approximately 45% and 95% of stream sediment samples were contaminated with lead and zinc, respectively. The spatial distribution of metal concentrations was characterized by a hotspot pattern, with highest values in central and southern parts of the catchment where there is a long urban and industrial history. The potential mobility of zinc is considerably greater than that of lead in both topsoils and stream sediments, and for both metals is slightly higher in the stream sediments than in the topsoils; both of these differences are statistically significant (P < 0.05). The implications of the findings in this paper for assessment and monitoring of metal contaminated areas are explored.

England↗