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Cobalt alters the growth of a manganese oxide film.

The mobility of dissolved heavy metals in natural waters is partially regulated by interactions with manganese oxide films. In the current work, the effects of aqueous cobalt(II) on manganese oxide film growth are studied by atomic force microscopy. The film is grown on the (104) surface of rhodochrosite (MnCO3). In the presence of O2(aq) and at circumneutral pH, film growth begins as manganese oxide islands that expand laterally across the surface. Addition of Co2+(aq) leads to the partial or complete dissolution of the manganese oxide film. Simultaneously, there is growth of new islands having multilayer structures that are unrestrained in the z-direction. The chemical composition of these new islands appears to include both Co and Mn ions. Empirical rules governing the growth of the two types of islands can be developed for the absence and the presence of Co2+(aq). In the absence of Co2+(aq), islands grow as flat two-dimensional rhombohedral islands of nearly uniform height (2.4 +/- 0.3 nm). These islands do not cross over steps on the substrate. The growth rules change markedly in the presence of Co2+(aq). The islands grow indefinitely in the z-direction as strata structures of polydisperse thickness and rounded tops. The islands readily grow over steps. Cobalt ions, therefore, relieve the two-dimensional restriction on layer formation and allow three-dimensional growth. Moreover, the shape of the dissolution pits on the surface of MnCO3 changes from rhombohedral in the absence of cobalt to partially rounded in the presence of cobalt. The rounding occurs for the obtuse edges of the pit. Direct microscopic observations of the interactions of cobalt with manganese oxide films provide new mechanistic insights that are important in the quantitative modeling of the mobility of heavy metals in the environment.

Journal Article↗

Interactions of hydrophobically modified polyvinylamine with pluronic triblock copolymer micelles.

The heats associated with the addition of triblock copolymers of ethylene oxide and propylene oxide (PEO-PPO-PEO pluronics) to solutions of linear polyvinylamine, with N-substituted pendant octyl groups (HMPVAm), were measured as functions of pH and pluronic structure. The interactions were exothermic with the overall enthalpy decreasing with increasing pH from 5 to 10. Surprisingly, the heat effect increased with increasing pluronic hydrophilicity; however, no enthalpy change was observed in the absence of micelles. The results were quantitatively modeled by assuming two competing processes-micellar dissolution and HMPVAm coating of micelles, preventing dissolution.

Journal Article↗

Single-file diffusion near channel boundaries.

Molecular transport under the conditions of single-file diffusion was investigated near the channel boundaries by using dynamic Monte Carlo and molecular dynamics simulations of tracer exchange between single-file channels and their surroundings. The boundary effect reported in our recent papers (Vasenkov S.; Kärger, J. Phys. Rev. E 2002, 66, 052601. Schüring, A.; Vasenkov S.; Fritzsche, S. J. Phys. Chem. B 2005, 109, 16711) was studied in detail. This boundary effect is characterized by deviations of the intrachannel concentration profiles of tracer molecules observed in the case of single-file diffusion near the channel boundaries from the corresponding profiles typical for normal diffusion. It has been shown in our previous studies that these deviations occur under the conditions when the potential-energy difference inside and outside of single-file channels was both comparable and much larger than the activation energy of intrachannel diffusion. Here, we report a quantitative model describing the boundary effect. According to this model, an occurrence of the boundary effect is related to a complex character of diffusion in finite single-file systems. Such diffusion can be described by the following two types of movements occurring in parallel: (i) correlated displacements of all molecules in any particular channel and (ii) fast displacements of single molecules, which are uncorrelated with the displacements of all other molecules in the same channel. The latter displacements are restricted to a certain length interval that depends on the channel length and the channel occupancy. This length interval is shown to determine the extensions of the channel margins where the boundary effect is observed.

Diffusion↗

Characterization of protein immobilization at silver surfaces by near edge X-ray absorption fine structure spectroscopy.

Ribonuclease A (RNase A) is immobilized on silver surfaces in oriented and random form via self-assembled monolayers (SAMs) of alkanethiols. The immobilization process is characterized step-by-step using chemically selective near-edge X-ray absorption fine structure spectroscopy (NEXAFS) at the C, N, and S K-edges. Causes of imperfect immobilization are pinpointed, such as oxidation and partial desorption of the alkanethiol SAMs and incomplete coverage. The orientation of the protein layer manifests itself in an 18% polarization dependence of the NEXAFS signal from the N 1s to pi* transition of the peptide bond, which is not seen for a random orientation. The S 1s to C-S sigma* transition exhibits an even larger polarization dependence of 41%, which is reduced to 5% for a random orientation. A quantitative model is developed that explains the sign and magnitude of the polarization dependence at both edges. The results demonstrate that NEXAFS is able to characterize surface reactions during the immobilization of proteins and to provide insight into their orientations on surfaces.

Absorption↗

Laser absorption scanning tunneling microscopy of carbon nanotubes.

We report single molecule laser absorption by carbon nanotubes stamped under ultrahigh vacuum onto Si(100)2x1:H surfaces. Absorption is detected by scanning tunneling microscopy. Images are obtained with and without modulated laser excitation using lock-in amplification and a rear-illumination geometry to reduce thermal effects. Noise appears at topographic edges and is analyzed by a quantitative model in terms of scan speed, mechanical instabilities, and feedback current fluctuations at the edge of the nanotubes. Noise due to mechanical instabilities is shown to persist even in the limit of slow scan speed.

Journal Article↗

Controlled two-dimensional pattern of spontaneously aligned carbon nanotubes.

We report a simple solution process to form controlled patterns of aligned single-walled carbon nanotubes on solid substrates. The essential step of the process is to deposit a dilute solution of DNA-wrapped carbon nanotubes (DNA-CNTs) on a SiO(2) surface covered with a thin hydrophobic layer. This leads to deposition of fully aligned CNTs. The alignment pattern can be controlled by metal electrodes in the deposition region and can be quantitatively modeled by the behavior of a quasi-two-dimensional DNA-CNT nematic phase near the solution/SiO(2) interface. These results point to the possibility of rational design and economical fabrication of CNT alignment patterns on solid substrates.

Crystallization↗

Addition of lithiated 5-hydroxymethyl-1,3-dithiane to benzaldehyde: HMPA-controlled trans stereoselectivity.

Addition of 5-substituted dithianyl anions to carbonyl compounds normally produces trans adducts. The presence of a nucleophilic hydroxymethyl group in position 5 dramatically decreases the trans stereoselectivity of the reaction in THF. The trans/cis ratio shows a bell curve dependence on HMPA, fitted to a quantitative model involving a series of equilibrated ion pairs, of which an intermediate contact ion pair possessing three (effective) HMPA molecules yields the trans adduct with much higher stereoselectivity. [structure: see text]

Journal Article↗

Mercurials and dimercaptans: synergism in the induction of chemoprotective enzymes.

The induction of NAD(P)H:quinone reductase (EC 1.6.99.2; QR) in Hepa 1c1c7 murine hepatoma cells provides a versatile quantitative model for measuring the potencies of inducers for Phase 2 detoxication enzymes. Since many inducers of these enzymes also protect animals and their cells against the toxic and neoplastic effects of carcinogens, understanding the mechanisms of induction of Phase 2 enzymes is important. Both HgCl2 and 2,3-dimercaptopropanol (BAL) are inducers of QR in these cells, and paradoxically BAL (which is about 30 times less potent than HgCl2) enhances the inducer potency of HgCl2 substantially. This synergism depends on the presence of two thiol groups on adjacent carbon atoms. Since nonchelated mercury(II)-thiol compounds did not show synergism, the formation of very high affinity bidentate chelates appears to be essential for such synergism. A major mechanism for the augmentation of the inducer potency of mercury(II) by BAL is the more rapid cellular uptake and the accumulation of higher intracellular concentrations of mercury. It is also possible that BAL-mercury chelates are intrinsically more potent as inducers. Although equimolar mixtures of BAL and HgCl2 and the synthetic chelate isolated from such mixtures were more potent inducers than HgCl2 alone, the presence of excess BAL increased this inducer synergism even further. By chromatography we showed the reversible formation of higher order complexes between BAL and mercury(II). Such complexes are transported into cells more efficiently and appear to be more potent than free HgCl2 or the chelate obtained from equimolar mixtures of BAL and HgCl2.(ABSTRACT TRUNCATED AT 250 WORDS)

Animals↗

Rod and rod mediated function in patients with beta-thalassemia major.

An electroretinographic (ERG) study was undertaken to test the hypothesis that scotopic retinal function is altered in transfused thalassemics on chronic Deferoxamine (DFO). ERG a- and b-wave responses and dark adapted visual thresholds were obtained from 11 patients with beta-thalassemia major, ages 7 to 38 (median 17) years. A quantitative model of the activation of phototransduction was fitted to the a-waves to estimate the gain of the transduction processes and the saturated amplitude of the rod photoresponse. From b-wave stimulus/response functions. the saturated b-wave amplitude and an index of b-wave sensitivity (log sigma ) were calculated. The patients' data were compared to those of normal subjects. The relations of the ERG parameters to age. average ferritin level, and duration of transfusion without DFO as well as other clinical parameters were examined. Longitudinal measures of b-wave responses and dark adapted visual thresholds. available for nine of the patients, were examined for significant change over time. For all patients both the gain and saturated amplitude of the rod response are normal. In two patients log sigma is below the 99% prediction interval for normal. One has low scotopic visual sensitivity. The duration of transfusion therapy unprotected by DFO chelation therapy was correlated with log a. These results suggest iron accumulation rather than DFO toxicity underlies scotopic dysfunction in older thalassemics. some of whom may have had extended periods of transfusion without the protection of chelation. Thus, monitoring of retinal function is recommended in such patients.

Adolescent↗

Operations research methods applied to workflow in a medical records department.

Transcribing medical documents accurately into pre-defined formats and within certain time frames is vital for administrative and medical purposes in any hospital. This paper describes quantitative models incorporating available data to represent transcription activities of a medical records department. We forecasted the workload of the department, determined the optimal worker schedule and designed a simulation model to represent the workflow of the transcription function of a medical record department. The findings provided insight into the workflow, staffing and performance of the department.

Computer Simulation↗

Attenuated total reflectance Fourier transform mid-infrared spectroscopic quantification of sorbitol and sorbose during a Gluconobacter biotransformation process.

Mid-infrared spectroscopy (MIRS) was used to simultaneously detect and predict concentrations of D-sorbitol and L-sorbose during a Gluconobacter suboxydans biotransformation. Quantitative models for both these compounds were developed for the entire time-course of the process and validated externally using samples not included in the original modelling exercise, giving standard errors of prediction of 3.29 and 3.3% for sorbitol and sorbose, respectively, and a correlation coefficient close to 1.

Bioreactors↗

Assessment of hydraulic restoration of San Pablo Marsh, California.

Inter-tidal marshes are dynamic diverse ecosystems at the transition zone between terrestrial and ocean environments. Geomorphologically, inter-tidal salt marshes are vegetated land-forms at elevations slightly greater than mean tidal levels that have distributed channels formed under ebb (drainage) tidal flows that widen and deepen in the seaward direction. The drainage channels enable tidal flows to circulate sediments and nutrients through the marsh system during normal tidal events, while depositing sediments during storm or seismic events. This dynamic system encourages considerable biodiversity while simultaneously providing water quality enhancement features that service marsh terrestrial life and marine life in the estuary. Reservoir creation limiting sediment transport, anticipated large increases in sea levels as well as agricultural and urban development have resulted in significant loss of inter-tidal marshes and subsequent adverse impacts on waterfowl, infauna and fisheries. The complex and continuously changing marsh channel hydraulics and sedimentary processes have severely constrained quantitative modeling of these marsh systems such that restoration/creation efforts remain something of an empirical science and further assessments are needed. The purpose of this paper is to outline current understanding of salt marsh hydrodynamics, sediment accretion processes and subsequent response of marsh vegetation to set the stage for assessment of a marsh restoration effort along San Pablo Bay near San Francisco, California. Several kilometers of drainage channels were constructed in a 624 ha disturbed salt marsh to restore tidal circulation and vegetation so as to enhance habitat for threatened species (e.g. clapper rail, harvest mouse, delta smelt and potentially anadromous fish species). Two distinct drainage channel systems ('east' and 'west') were installed having similar channel dimensions common to salt marshes in the region, but having design bankfull tidal prism volumes differing by a factor of two. Following channel excavation, main channel tidal flows and sediment loads as well as marsh sediment accretion rates were monitored to assess the relative success of the excavation in restoring tidal circulation and vegetation (Salicornia spp.) to the marsh. Annual aerial surveys corroborated with ground-truthing indicated that marsh vegetation rapidly expanded, from 40 to 85% coverage several years following excavation. The 'east' channel intake was nearly completely silted in within three years. However, channel surveys and flow measurements indicated that the 'east' channel system tidal prism was only about 1200 m3, more than an order of magnitude less than that of the stable 'west' channel system. Marsh sediment accretion rates were on the order of 7-8 mm yr(-1), a rate common to the Pacific coast region that exceeds estimated sea level rise rates of approximately 2 mm yr(-1). East channel network siltation resulted in storm and spring tidal flood ponding such that marsh vegetation coverage decreased to 51% of the marsh area and related habitat expansion decreased. These results are considered in terms of the primary inter-tidal marsh factors affecting possible restoration/creation strategies.

Atriplex↗

Energy flux modulation on the outer membrane of mitochondria by metabolically-derived potential.

Voltage-dependent anion channels (VDACs) are the porins in the outer mitochondrial membrane allowing metabolite flux between mitochondria and the cytoplasm. The permeabilities of the VDACs to ATP(-4), ADP(3-), creatine phosphate2-, Pi2-, Pi-, and other charged metabolites depend on the membrane potential. But neither the existence of the electrical potential across the outer membrane of mitochondria, nor its generation mechanisms have been experimentally shown. In this work, the concept of metabolically-derived potential that could be generated on the outer membrane was developed further. The computational study of the quantitative models shows that a steady-state membrane potential above 40 mV may be generated across a membrane with VDACs, if the VDACs are considered to be non-permeable to K+ and Cl-. Free permeability of VDACs to these inorganic ions, mimicking VDACs biological behavior, decreases the potential to nearly 12 mV. This decrease does not result from the electrical shortening of the potential by K+ and Cl- fluxes, but is caused by the electrodynamic compartmentation of the charged metabolites influencing the Goldman fluxes and the enzyme activity determining the fluxes. The interaction of two cyclic steady-state fluxes of charged metabolites due to the synergetic superposition of the potentials generated by each of these fluxes was obtained, and the effect of amplification of one flux by the other was theoretically demonstrated. These calculations based on VDACs' known permeability-voltage characteristics indicate that there is a certain possibility that the cell energy metabolism is regulated on the outer membrane of mitochondria by the electrical potential generated by various metabolically-dependent mechanisms.

Energy Metabolism↗

Spatial factors in visual attention: a reply to Crassini.

Distances between stimuli and, derivatively, compactness of stimulus subsets are pervasive determiners of discrimination and classification performance. Contrary to Crassini (1986), these factors are sufficient to account for the major patterns in the chronometric data of Podgorny and Shepard (1978, 1983). Other factors, such as the dichotomous one distinguishing what Crassini terms unitary and nonunitary subsets, may exert some additional influence. But a convincing demonstration would require formulation of a quantitative model capable of being pitted against the distance-based model of Podgorny and Shepard within the context of their entire body of data.

Attention↗

On cross-modal similarity: the perceptual structure of pitch, loudness, and brightness.

Examined how pitch and loudness correspond to brightness. In the Experiment 1, 16 Ss identified which of 2 lights more resembled each of 16 tones; in Experiment 2, 8 of the same 16 Ss rated the similarity of lights to lights, tones to tones, and lights to tones. (1) Pitch and loudness both contributed to cross-modal similarity, but for most Ss pitch contributed more. (2) Individuals differed as to whether pitch or loudness contributed more; these differences were consistent across matching and similarity scaling. (3) Cross-modal similarity depended largely on relative stimulus values. (4) Multidimensional scaling revealed 2 perceptual dimensions, loudness and pitch, with brightness common to both. A simple quantitative model can describe the cross-modal comparisons, compatible with the view that perceptual similarity may be characterized through a malleable spatial representation that is multimodal as well as multidimensional.

Attention↗

Control of attention around the fovea.

Three experiments tested young adults' abilities to use size and location cues to find and identify a target letter in a visual field containing 8 to 12 letters. Location cues (relatively near to or far from the fovea) and size cues (relatively large or small) were given before the display. Compared with response times on neutral, no-cue trials, location and size cues produced independent cost and benefit effects. The best fitting quantitative models allow attentional resources to be distributed in ringlike areas varying in distance from the fixation point, within which further selection of items by their relative size is possible.

Adult↗

Spatial attention to arrays of multidimensional objects.

Encoding briefly displayed arrays of multidimensional objects appears to require selective attention, but this hypothesis is challenged by M. J. Nissen's (1985) finding that properties of an object are reported independently. Selective attention to some objects but not others should produce positive dependence. Theoretical analysis shows that deviations from independence would have been difficult to observe in Nissen's data because of high guessing rates and small sample sizes. Four new experiments showing strong positive dependence in property reports are described. Deviations from independence were highly significant for most Ss. Quantitative modeling shows that selective attention to subsets of objects would produce about the amount of dependence obtained. Rather than challenging attention theories, the amount of dependence in encoding multidimensional objects is consistent with selective attention to either objects or locations.

Attention↗

Interaural and monaural clicks and clocks: tempo difference versus attention switching.

We describe a quantitative model capable of explaining the results of all reported investigations of the counting of interaural and monaural click sequencies. The model is developed by means of three convergent operations: (a) reanalyzing absolute-estimation data of apparent repetition rates of interaural and monaural sequences, (b) deriving interaural and monaural counting times from numerosity-judgement data, and (c) analyzing the time that observers needed to respond to the end of interaural and monaural sequences. The combined evidence demonstrates that the perceived onset asynchrony (POA) between interaural events is 24 msec longer than that between monaural events. The model has three components: (a) a "stimulus clock," which represents the stimulus onset synchrony (SOA) between events; (b) a "memory clock," which represents the POA between events, and (c) a "counting clock," which represents the counter increment time. The transfer functions between the three clocks are deduced from empirical data. Other proposals to explain interaural click counting results (attention switching, streaming by locus, counterincrement deficit) are discussed and rejected.

Attention↗