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At least 1,441 records · Page 80Linked to original sources
PubMed2004

Kinetics of phase transformations in depletion-driven colloids.

We present results from a detailed numerical study of the kinetics of phase transformations in a model two-dimensional depletion-driven colloidal system. Transition from a single, dispersed phase to a two-phase coexistence of monomers and clusters is obtained as the depth of the interaction potential among the colloidal particles is changed. Increasing the well depth further, fractal clusters are observed in the simulation. These fractal clusters have a hybrid structure in the sense that they show hexagonal closed-packed crystalline ordering at short length scales and a ramified fractal nature at larger length scales. For sufficiently deep potential wells, the diffusion-limited cluster-cluster aggregation model is recovered in terms of the large-scale fractal dimension Df of the clusters, the kinetic exponent z, and the scaling form of the cluster size distribution. For shallower well depths inside the two-phase coexistence region, simulation results for the kinetics of cluster growth are compared with intermediate-stage phase separation in binary mixtures. In the single-phase region, growth kinetics agree well with a mean-field aggregation-fragmentation model of Sorensen, Zhang, and Taylor.

Journal Article↗
PubMed2001

Point-contact conductances from density correlations.

We formulate and prove an exact relation which expresses the moments of the two-point conductance for an open disordered electron system in terms of certain density correlators of the corresponding closed system. As an application of the relation, we demonstrate that the typical two-point conductance for the Chalker-Coddington model at criticality transforms like a two-point function in conformal field theory.

Journal Article↗
PubMed2002

Duality between the weak and strong interaction limits for randomly interacting fermions.

We establish the existence of a duality transformation for generic models of interacting fermions with two-body interactions. The eigenstates at weak and strong interaction U possess similar statistical properties when expressed in the U=0 and U= infinity eigenstates bases, respectively. This implies the existence of a duality point U(d) where the eigenstates have the same spreading in both bases. U(d) is surrounded by an interval of finite width which is characterized by a non-Lorentzian spreading of the strength function in both bases. Scaling arguments predict the survival of this intermediate regime as the number of particles is increased.

Journal Article↗
PubMed2004

Strain, size, and composition of InAs quantum sticks embedded in InP determined via grazing incidence x-ray anomalous diffraction.

We have used x-ray anomalous diffraction to recover the model-independent Fourier transform (x-ray structure factor) of InAs quantum sticklike islands embedded in InP. The average height of the quantum sticks, as deduced from the width of the structure factor profile, is 2.54 nm. The InAs out-of-plane deformation, relative to InP, is 6.1%. Diffraction anomalous fine structure provides evidence of pure InAs quantum sticks. Finite difference method calculations reproduce well the diffraction data, and give the strain along the growth direction. The chemical mixing at interfaces is also analyzed.

Journal Article↗
PubMed2005

Simulations of spinodal nucleation in systems with elastic interactions.

Systems with long-range interactions quenched into a metastable state near the pseudospinodal exhibit nucleation that is qualitatively different from classical nucleation near the coexistence curve. We observe nucleation droplets in Langevin simulations of a two-dimensional model of martensitic transformations and determine that the structure of the nucleating droplet differs from the stable martensite structure. Our results, together with experimental measurements of the phonon dispersion curve, allow us to predict the nature of the droplet. The results have implications for nucleation in many solid-solid transitions and the structure of the final state.

Journal Article↗
PubMed2003

Relations between the zinc-blende and the NaCl structure type.

A new model for the transformation from the zinc-blende to the NaCl type is developed on the basis of the deformation of a 4-connected heterogeneous sphere packing in space group P3(2). The geometrical features of this transition are discussed by investigating the analogous deformations of a 4-connected homogeneous sphere packing in the supergroup P3(2)21 of P3(2). In this space group, the atomic arrangement corresponds to a diamond configuration. During the phase transition, it is deformed under preservation of all sphere contacts until a cubic primitive lattice is reached, the analogue of the NaCl arrangement formed by like atoms. The intermediate structure that occurs between the zinc-blende and the NaCl type is compared with the cinnabar type.

Journal Article↗
PubMed2006

Prediction for human motion tracking failures.

We propose a new and effective method of predicting tracking failures and apply it to the robust analysis of gait and human motion. We define a tracking failure as an event and describe its temporal characteristics using a hidden Markov model (HMM). We represent the human body using a three-dimensional, multicomponent structural model, where each component is designed to independently allow the extraction of certain gait variables. To enable a fault-tolerant tracking and feature extraction system, we introduce a single HMM for each element of the structural model, trained on previous examples of tracking failures. The algorithm derives vector observations for each Markov model using the time-varying noise covariance matrices of the structural model parameters. When transformed with a logarithmic function, the conditional output probability of each HMM is shown to have a causal relationship with imminent tracking failures. We demonstrate the effectiveness of the proposed approach on a variety of multiview video sequences of complex human motion.

Algorithms↗
PubMed1993

Enhanced growth potential of cultured rabbit tracheal epithelial cells following exposure to N-methyl-N'-nitro-N-nitrosoguanidine.

To establish a standardized model for the transformation of rabbit airway epithelial cells, we attempted to transform rabbit tracheal epithelial (RbTE) cells in culture with N-methyl-N'-nitro-N-nitrosoguanidine (MNNG). RbTE cells, harvested by enzymatic digestion from male New Zealand white rabbits, were plated onto feeder layers of irradiated 3T3 cells. Control cells proliferated exponentially during the 2nd week of culture and reached the plateau phase by the 3rd week. Cells exposed to MNNG (0.1 microgram/ml) proliferated in a fashion similar to the control cells, except that there was some delay before proliferation began. The clonogenic activity of RbTE cells rapidly decreased in parallel with the increase in cell population equally in the control and MNNG groups. During the late plateau phase, cells exposed to MNNG regained clonogenic activity, and this compartment size expanded with time, whereas the clonogenic activity in control cultures remained below the detectable level. In RbTE cell cultures exposed three times to 0.1 microgram/ml MNNG, large, persistent and proliferating colonies emerged at a frequency of 1-3 x 10(-2) among the surviving clones, whereas all the control cultures eventually became senescent. The MNNG-induced alteration in the growth potential of RbTE cells, i.e., the extended lifespan, and the maintenance and even expansion of clonogenic activity, was similar to that of transformed rat tracheal epithelial cells. However, no immortal cell line could be established from these growth-altered RbTE cells. We therefore concluded that the growth-altered RbTE cells were partially transformed.

Animals↗
PubMed2005

Myelodysplastic syndrome associated with trisomy 2.

Clinical course and cytogenetic analysis suggest that myelodysplasia (MDS) is one step in a multistep model of malignant transformation of haematopoietic stem cells to acute myeloid leukaemia (AML). We report a further case of MDS associated with trisomy 2, and comment on the significance of the cytogenetic abnormality, which as a sole abnormality only occurs in MDS, but is found in combination with other chromosomal abnormalities in AML. Previous reports on balanced and unbalanced chromosomal abnormalities associated with therapy related MDS and therapy related AML suggest that trisomy 2 is an early chromosomal abnormality in leukaemogenesis.

Aged↗
PubMed1995

The dialectic in becoming a mother: experiencing a postpartum phenomenon.

In this study of the phenomenon of the postpartum period grounded theory methodology was used to investigate the experiences of first-time mothers during the first three months following their deliveries. The sample consisted of 12 primipara women and 3 multipara women. The data were generated by using unstructured interviews and field notes. Each woman was interviewed twice, the first time between 2 and 3 weeks postpartum, and the second time between 10 and 12 weeks postpartum. The final data for analysis consisted of: data generated through interviews, field notes, and the narratives of four mothers found in the non-fiction literature. Constant comparative analysis resulted in the generation of four categories and corresponding subcategories. These were: (1) Giving of Self; (2) Redefining Self; (3) Redefining Relationships; and (4) Redefining Professional Goals. The categories were not mutually exclusive. All the categories converged to provide support for the core variable 'Dialectic in Becoming a Mother'. The dialectic perspective demonstrated that, in becoming mothers, the women experienced transition, contradictions, tensions and transformations. A theoretical model was developed to show relationships among these major concepts. The findings of this study will be useful in effecting change in the provision of care to postpartum women and their families.

Female↗
PubMedDate not supplied

Fast Fourier transform convolution calculations of x-ray isodose distributions in homogeneous media.

Convolution concepts were implemented using the discrete fast Fourier transform (FFT) to model the three-dimensional dose distribution due to x-rays produced by a medical linear accelerator. Convolution kernels were employed that had been calculated by Mackie using the EGS4 Monte Carlo code. The EGS4 code was also used to estimate initially the spectrum by simulating the production, filtering, and flattening of the beam in the collimator of the linear accelerator. The continuous bremsstrahlung spectrum was modeled using five discrete energies. The more subtle field-size effects of collimator scattering on the spectrum were obtained by calculating corrections to the spectral components using a least-squares search technique. Dose distributions were obtained using FFT convolutions of the kernels for each energy with the spectrally weighted fluence distributions for that energy. The dose distributions were compared with isodose distributions measured in a water phantom. The agreement was generally found to be better than 1% on the central axis. The calculation time for a single three-dimensional beam was approximately 20 min using a VAX/750 without an array processor. Methods were explored to reduce the calculation time using similar hardware, and estimates were made of how to reduce the calculation time using a more sophisticated computer system.

Electrons↗
PubMed2005

Multiresolution spectrotemporal analysis of complex sounds.

A computational model of auditory analysis is described that is inspired by psychoacoustical and neurophysiological findings in early and central stages of the auditory system. The model provides a unified multiresolution representation of the spectral and temporal features likely critical in the perception of sound. Simplified, more specifically tailored versions of this model have already been validated by successful application in the assessment of speech intelligibility [Elhilali et al., Speech Commun. 41(2-3), 331-348 (2003); Chi et al., J. Acoust. Soc. Am. 106, 2719-2732 (1999)] and in explaining the perception of monaural phase sensitivity [R. Carlyon and S. Shamma, J. Acoust. Soc. Am. 114, 333-348 (2003)]. Here we provide a more complete mathematical formulation of the model, illustrating how complex signals are transformed through various stages of the model, and relating it to comparable existing models of auditory processing. Furthermore, we outline several reconstruction algorithms to resynthesize the sound from the model output so as to evaluate the fidelity of the representation and contribution of different features and cues to the sound percept.

Acoustic Stimulation↗
PubMed1991

Extended life span of human endometrial stromal cells transfected with cloned origin-defective, temperature-sensitive simian virus 40.

Human endometrial stromal cells transfected with an origin-defective, temperature-sensitive simian virus 40 recombinant plasmid are dependent on T-antigen function for proliferation and at the permissive temperature have an extended life span in culture. Southern blot analysis indicates that the transfected gene is present in low copy number, possibly at a single integration site. Normal stromal cells are capable of 10 to 20 population doublings in culture. Transfected cultures have been carried at the permissive temperature to 80 population doublings before crisis. In the multistep model of malignant transformation of human cells, these cells represent one of the earliest stages: extended but finite life span. We have used these cells to investigate alterations in signal transduction that may be responsible for this early stage of transformation caused by the large T antigen. Temperature shift experiments indicate that the expression of ornithine decarboxylase (ODC) but not of c-fos is altered by the large T antigen. Induction of c-fos by serum or 12-O-tetradecanoylphorbol-13-acetate is independent of temperature. However, in the transfected cells, the induction of ODC by asparagine or serum is greatly enhanced at the permissive temperature. This result indicates that the large T antigen acts downstream of c-fos but upstream of ODC expression in the signal-transducing cascade.

Antigens, Polyomavirus Transforming↗
PubMed2004

Activation of the tumor-specific death effector apoptin and its kinase by an N-terminal determinant of simian virus 40 large T antigen.

Apoptin, a viral death protein derived from chicken anemia virus, displays a number of tumor-specific behaviors. In particular, apoptin is phosphorylated, translocates to the nucleus, and induces apoptosis specifically in tumor or transformed cells, whereas it is nonphosphorylated and remains primarily inactive in the cytoplasm of nontransformed normal cells. Here, we show that in normal cells apoptin can also be activated by the transient transforming signals conferred by ectopically expressed simian virus 40 (SV40) large T antigen (LT), which rapidly induces apoptin's phosphorylation, nuclear accumulation, and the ability to induce apoptosis. Further analyses with mutants of LT showed that the minimum domain capable of inducing all three of apoptin's tumor-specific properties resided in the N-terminal J domain, a sequence which is largely shared by SV40 small t antigen (st). Interestingly, the J domain in st, which lacks its own nuclear localization signal (NLS), required nuclear localization to activate apoptin. These results reveal the existence of a cellular pathway shared by conditions of transient transformation and the stable cancerous or precancerous state, and they support a model whereby a transient transforming signal confers on apoptin both the upstream activity of phosphorylation and the downstream activity of nuclear accumulation and apoptosis induction. Such a pathway may reflect a general lesion contributing to human cancers.

Amino Acid Sequence↗
PubMed1985

myc and src oncogenes have complementary effects on cell proliferation and expression of specific extracellular matrix components in definitive chondroblasts.

The effects of the avian viral oncogenes src and myc were compared for their ability to alter the differentiated phenotype and the proliferative capacity of definitive chondroblasts. As previously demonstrated, viruses carrying the src oncogene suppressed the synthesis of the chondroblast-specific products, type II collagen and cartilage-specific sulfated proteoglycan. In contrast, infection with MC29 and HB1 viruses, which carry the myc oncogene, did not suppress the synthesis of these normal differentiated cell products, but the infected cells exhibited an increased proliferative potential. The MH2 virus, which carries both the myc and mil oncogenes, both induced the suppression of these chondroblast-specific products and increased cell proliferation. The implications of these results for cooperation between oncogenes and the multi-oncogene models for neoplastic transformation are discussed.

Animals↗
PubMed2000

Proliferative activity and tumorigenic conversion: impact on cellular metabolism in 3-D culture.

Oxygen consumption, glucose, lactate, and ATP concentrations, as well as glucose and lactate turnover rates, have been studied in a three-dimensional carcinogenesis model of differently transformed rat embryo fibroblasts (spontaneously immortalized Rat1 and myc-transfected M1, and the ras-transfected, tumorigenic descendants Rat1-T1 and MR1) to determine metabolic alterations that accompany tumorigenic conversion. Various bioluminescence techniques, thymidine labeling, measurement of PO(2) distributions with microelectrodes, and determination of cellular oxygen uptake rates (Qc(O(2))) have been applied. In the ras-transfected, tumorigenic spheroid types, the size dependencies of some of the measured parameters exhibited sharp breaks at diameters of approximately 830 microm for Rat1-T1 and approximately 970 microm for MR1 spheroids, respectively, suggesting that some fundamental change in cell metabolism occurred at these characteristic diameters (denoted as "metabolic switch"). Qc(O(2)) decreased and lactate concentration increased as functions of size below the characteristic diameters. Concomitantly, glucose and lactate turnover rates decreased in MR1 spheroids and increased in Rat1-T1. Spheroids larger than the characteristic diameters (exhibiting cell quiescence and lactate accumulation) showed an enhancement of Qc(O(2)) with size. Systematic variations in the ATP and glucose levels in the viable cell rim were observed for Rat1-T1 spheroids only. Proliferative activity, Qc(O(2)), and ATP levels in small, nontumorigenic Rat1 and M1 aggregates did not differ systematically from those recorded in the largest spheroids of the corresponding ras transfectants. Unexpectedly, respiratory activity was present not only in viable but also in the morphologically disintegrated core regions of M1 aggregates. Our data suggest that myc but not ras transfection exerts major impacts on cell metabolism. Moreover, some kind of switch has been detected that triggers profound readjustment of tumor cell metabolism when proliferative activity begins to stagnate, and that is likely to initiate some other, yet unidentified energy-consuming process.

Adenosine Triphosphate↗
PubMed1995

Receptor discrimination and control of agonist-antagonist binding.

The law of mass action is the common model for the interaction of agonist and antagonist compounds with cellular receptors. Parameters of the interaction, obtained from functional and radioligand-binding studies, allow discrimination and subtyping of receptors and aid in understanding specific mechanisms. This article reviews the theory and associated mathematical models and graphical transformations of data that underlie the determination of receptor parameters. The main theory assumes that agonist and antagonist compounds bind to cells that have a fixed number of receptors and provides the framework for obtaining drug-receptor parameters from data and their graphical transformations. Conditions that produce a change in receptor number, a newer concept in pharmacology, can have an important effect on the parameter values derived in the usual way. This review concludes with a discussion of the quantitative study of receptor-mediated feedback control of endogenous ligands, a very new topic with potentially important implications for understanding antagonist effectiveness, loss of control, and chaos in regulated mass action binding.

Animals↗
PubMed2005

Representation of eye position in primate inferior colliculus.

We studied the representation of eye-position information in the primate inferior colliculus (IC). Monkeys fixated visual stimuli at one of eight or nine locations along the horizontal meridian between -24 and 24 degrees while sounds were presented from loudspeakers at locations within that same range. Approximately 40% of our sample of 153 neurons showed statistically significant sensitivity to eye position during either the presentation of an auditory stimulus or in the absence of sound (Bonferroni corrected P < 0.05). The representation for eye position was predominantly monotonic and favored contralateral eye positions. Eye-position sensitivity was more prevalent among neurons without sound-location sensitivity: about half of neurons that were insensitive to sound location were sensitive to eye position, whereas only about one-quarter of sound-location-sensitive neurons were also sensitive to eye position. Our findings suggest that sound location and eye position are encoded using independent but overlapping rate codes at the level of the IC. The use of a common format has computational advantages for integrating these two signals. The differential distribution of eye-position sensitivity and sound-location sensitivity suggests that this process has begun by the level of the IC but is not yet complete at this stage. We discuss how these signals might fit into Groh and Sparks' vector subtraction model for coordinate transformations.

Acoustic Stimulation↗