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At least 145 records · Page 8Linked to original sources

Modeling buffered Ca2+ diffusion near the membrane: implications for secretion in neuroendocrine cells.

Secretion of catecholamines from neuroendocrine cells is relatively slow and it is likely that redistribution and buffering of Ca2+ is a major factor for delaying the response after a stimulus. In fact, in a recent study (Chow, R. H., J. Klingauf, and E. Neher. 1994. Time course of Ca2+ concentration triggering exocytosis in neuroendocrine cells. Proc. Natl. Acad. Sci. U.S.A. 91:12765-12769) Chow et al. concluded that the concentration of free calcium ([Ca2+]i) at a release site peaks at < 10 microM during short-step depolarizations, and then decays to baseline over tens of milliseconds. To check whether such a time course is consistent with diffusion theory, we modeled buffered diffusion in the vicinity of a Ca2+ channel pore. Peak [Ca2+]i and the slow decay were well simulated when release-ready granules were randomly distributed within a regular grid of Ca2+ channels with mean interchannel distances of 300-600 nm. For such large spacings, however, the initial rise in [Ca2+]i was underestimated, suggesting that a small fraction of the release-ready pool (approximately 10%) experiences much higher [Ca2+]i, and thus might be colocalized with Ca2+ channels. A model that accommodates these findings then correctly predicts many recent observations, including the result that single action potentials evoke near-synchronous transmitter release with low quantal yield, whereas trains of action potentials lead to desynchronized release, but with severalfold increased quantal yield. The simulations emphasize the role of Ca2+ not only in triggering, but also in modulating the secretory response: buffers are locally depleted by residual Ca2+ of a preceding stimulus, so that a second pulse leads to a larger peak [Ca2+]i at the fusion sites.

Action Potentials↗

Theoretical and experimental study on phase transitions and mass fluxes of supersaturated water vapor onto different insoluble flat surfaces.

The heterogeneous nucleation and condensation of water vapor onto three different surfaces (newsprint paper, Teflon, cellulose film) was studied theoretically and experimentally. The theoretical framework included the use of the classical theory of heterogeneous nucleation, diffusion theory corrected with transition regime correction factors, and the theory of heat transfer. Experiments were carried out using an environmental scanning electron microscope (ESEM). The experimental results for newsprint paper were investigated more closely. Our results show that the measured onset supersaturations were smaller than the modeled ones when the experimentally determined contact angle was used. Furthermore, the measured condensational growth rates were smaller than the modeled ones, presumably resulting from the approximations that had to be made in the calculations.

Journal Article↗

The diffusion capsule, a novel device for the addition of a solute at a constant rate to a liquid medium. Its application to metabolic regulation.

The diffusion capsule consists of a cylindrical container that can be completely filled with a solution and sealed with a small semi-permeable membrane at one end. In use, the capsule is immersed in an agitated liquid. Experiments on concentrated solutions in the capsule showed that, contrary to diffusion theory, the rate of diffusion of solute (sugars or amino acids) out of the capsule remained virtually constant until about 65% of the solute had diffused out of the capsule. Thus the device has been used to maintain constant material feed rates for periods exceeding 30h. The capsule is a simple and compact substitute for a pump and is superior to a pump for small feed rates in many applications. The capsule greatly extends the scope of the shake-flask culture technique for micro-organisms in that substrate-limited growth, possibly the aspect of greatest interest, is readily achieved simply by dropping in the flask a capsule containing the substrate. Diffusion feed should facilitate study of the metabolism of toxic substrates: also it is likely to provide an improved means for supplying a pulse of tracer to a culture.

Amino Acids↗

Quantum statistical mechanical theory of diffusion and reaction on solid surfaces.

We present the derivation of the general kinetic equations of diffusion and diffusion with interaction (or chemical reaction) on solid surfaces (or in dense media) by using the density matrix method. We indicate several problems to which this formalism applies and, in particular, discuss the damping effect on diffusion.

Journal Article↗

Theory of diffusion controlled growth.

We present a new theoretical framework for diffusion limited aggregation and associated dielectric breakdown models in two dimensions. Key steps are understanding how these models interrelate when the ultraviolet cutoff strategy is changed, the analogy with turbulence and the use of logarithmic field variables. Within the simplest, Gaussian, truncation of mode-mode coupling, all properties can be calculated. The agreement with prior knowledge from simulations is encouraging, and a new superuniversality of the tip scaling exponent is both predicted and confirmed.

Journal Article↗

A theory of diffuse light scattering by lungs.

We present a theoretical treatment of backscattered light from the interior of a lung illuminated by a thin beam of light normally incident on the pleural surface. An approximate formula is developed describing how the backscattered intensity varies with distance from the point of light entry. This is shown to depend markedly on the optical mean free path and on the effective extinction coefficient. We attempt to relate the optical mean free path to the mean alveolar size. This relationship is found to depend primarily on septal reflection and refraction. Reflection is treated quantitatively. Refraction is much more difficult and may have to be approached empirically. We present here the rudiments of a technique with implications for the possibility of dynamic stereology.

Light↗

Diffusion of preventive innovations.

The present paper draws on the diffusion of innovations model to derive a series of strategies for speeding up the spread and implementation of new ideas in preventing addiction. Preventive innovations usually require an action at one point in time in order to avoid an unwanted future condition. Hence, preventive innovations diffuse rather slowly, in part due to delayed rewards from adoption. Here we suggest five strategies, based on diffusion theory, for speeding up the diffusion of preventive innovations.

Diffusion of Innovation↗

Linear diffusion of restriction endonucleases on DNA.

We have investigated the dependence of the rate of cleavage of DNA by EcoRI, HindIII, and BamHI on the chain length of the substrate. In order to keep the influence of flanking sequences and of nonspecific binding identical for all substrates we have carried out all experiments with the same plasmid DNA which had been digested previously with a variety of different restriction enzymes to give a set of substrates of different lengths. Our results show that depending on the buffer conditions long substrates are cleaved faster than small ones. We interpret these findings to mean that under certain conditions a linear diffusion of the enzymes on the DNA is involved in localizing the recognition sites. For EcoRI the mean diffusion length is approximately 1000 base pairs at 1 mM MgC12 which can be shown by diffusion theory to correspond to a linear diffusion coefficient of 5 X 10(-10) cm2 s-1. At 10 mM MgCl2 the linear diffusion of EcoRI is negligible and does not lead to a significant enhancement of the rate of site localization. In the presence of nonsaturating amounts of one of the prokaryotic histone-like protein Hu (NS 2) small and large DNA substrate are cleaved with identical rate by EcoRI indicating that other proteins bound to the DNA constitute a barrier across which linear diffusion cannot take place. We conclude that linear diffusion, albeit detectable under certain conditions in vitro, probably is of little importance for the process of site localization in vivo.

Binding Sites↗

Light dosimetry in optical phantoms and in tissues: I. Multiple flux and transport theory.

This is the first of two papers on the quantitative measurement of light energy fluence rates in optical phantoms and in tissues, in vitro and in vivo. The theory discussed in the present paper will be used in a forthcoming experimental paper to quantitatively check measurements of light energy fluence rates. A simple multiple flux model, which is equivalent to the diffusion approximation, is derived from the equation of transfer in a plane as well as in a spherical geometry. The equations obtained are similar to those of the Kubelka-Munk and related heuristic models. This permits conclusions regarding the limitations of these models and the values of their constants. The heuristic models are equivalent to diffusion theory for diffuse incident light, but not for collimated incident light. We also present a simple calculation of the radiance as a function of direction in the diffusion domain. This, together with the effective attenuation coefficient, permits indirect experimental determination of both the albedo and the anisotropy factor (g) of the scattering function. Similarity relations are discussed, as they result from the so called delta-Eddington approximation, leading to the conclusion that far from boundaries and sources light propagation characteristics do not change very much when g and omega s are varied, provided omega s (1-g) is kept constant (omega s = scattering coefficient). Therefore, only two optical constants are required to approximately describe light propagation in homogeneous and isotropic media in the diffusion approximation.

Mathematics↗

Geometry and spatial patterns in Polysphondylium pallidum.

The formation of secondary sori in whorls of Polysphondylium pallidum provides an attractive model system for the study of symmetry breaking during morphogenesis. Tip-specific antibodies that permit detection of very early stages in this patterning process are available. We have found that the patterns of tip-specific antigen expression vary considerably depending on the size, shape, and developmental stage of the whorl. All of these patterns, however, are well explained by patterning models that rely on short-range autocatalysis and long-range inhibition, as exemplified by reaction-diffusion theories. In the context of reaction-diffusion, we discuss the possible effects of initial conditions, boundary conditions, and nonlinearities on the selection of patterns in P. pallidum whorls.

Models, Theoretical↗

Aspects of similarity in tissue optics with strong forward scattering.

The similarity studied in this paper links the diffusion exponent to the reduced albedo. If F is the ratio of the diffusion exponent assumed by standard diffusion theory to the actual value of the diffusion exponent, it is shown that for forward-scattering functions, as often found in biological tissues, the values of F approach limiting curves. These curves depend on a constant in the homologous scattering patterns, which can describe Henyey-Greenstein scattering patterns, but which can also approximate Rayleigh-Gans phase functions. Finally, a practical approach for estimating the solution for mixtures of these forward-scattering phase functions with isotropic scatterers has been given.

Humans↗