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PubMedDate not supplied

Production of near-isogenic lines and marked monosomic lines in common wheat (Triticum aestivum) cv. Chinese Spring.

Sixteen near-isogenic lines (NILs) carrying a marker gene were produced by the recurrent backcrossing method in the genetic background of common wheat (Triticum aestivum) cv. Chinese Spring (CS). Three genes from alien species showed segregation distortion. In NILs carrying a marker gene of rye (Secale cereale) or Aegilops caudata, the alien chromosome segments were detected by fluorescence in situ hybridization (FISH). The NILs were grown with replications and the effect of marker genes on plant morphology in the genetic background of CS was investigated. These NILs were further crossed with the corresponding monosomics of CS and 13 monosomic lines whose monosome carries a respective marker gene were established and named "marked monosomics." Many of the marked monosomics were distinguishable from the disomic NILs because of the different dosage effect of the genes. The NILs are utilized for studies on gene isolation or gene regulation. Marked monosomics are useful not only for monosomic analysis but also for production of homologous chromosome substitution lines because chromosome observation is not required.

Alleles↗
PubMed2004

Early Cambrian sipunculan worms from southwest China.

We report the discovery of sipunculan worms from the Lower Cambrian Maotianshan Shale, near Kunming (southwest China). Their sipunculan identity is evidenced by the general morphology of the animals (sausage-shaped body with a slender retractable introvert and a wider trunk) and by other features, both external (e.g. perioral crown of tentacles, and hooks, papillae and wrinkle rings on the body surface) and internal (U-shaped gut, and the anus opening near the introvert-trunk junction). The three fossil forms (Archaeogolfingia caudata gen. et sp. nov., Cambrosipunculus tentaculatus gen. et sp. nov. and Cambrosipunculus sp.) have striking similarities to modern sipunculans, especially the Golfingiidae to which their evolutionary relationships are discussed. This study suggests that most typical features of extant sipunculans have undergone only limited changes since the Early Cambrian, thus indicating a possible evolutionary stasis over the past 520 Myr.

Animal Structures↗
PubMed2026

A Deep Model Framework for Morphological Trait Imputation Across Taxonomic Groups.

Incomplete morphological trait data pose major hurdles for trait-based analyses, particularly when missing values, multicollinearity, and sparse sampling constrain inference. These issues limit our ability to quantify trait variation and explore broad patterns of functional differentiation across taxa. Here, we introduce FS-DeepRBFNet, which overcomes these pitfalls through integrating correlation-based feature selection with a dual-layer adaptive radial basis function (RBF) network. This end-to-end approach effectively reduces noise and captures both linear allometric trends and nonlinear morphological relationships. We tested the framework on a large species-level morphological trait dataset of Chinese birds and further validated its cross-taxon transferability using the Amphibian Database (Caudata). FS-DeepRBFNet consistently outperformed conventional methods such as KNN, Random Forest, and XGBoost, demonstrating superior predictive accuracy across multiple traits. Beyond improvements, the model revealed biologically interpretable trait associations and stable cross-taxon generalization. These results demonstrate that FS-DeepRBFNet provides a robust and biologically grounded solution for morphological trait prediction, enabling reliable imputation for comparative phylogenetics, functional ecology, and biodiversity forecasting in data-limited situations.

cross‐taxon transferability↗
PubMed2000

ITS regions in diploids of Aegilops (Poaceae) and their phylogenetic implications.

The nucleotide sequences of the internal transcribed spacer (ITS) of nuclear ribosomal DNA in nine diploid species representing six sections of Aegilops were determined by direct sequencing of PCR-amplified DNA fragments. These sequences were aligned with two ITS sequences of additional species from Genbank. Sequence divergences were estimated using Kimura two-parameter model, and the phylogenetic analyses were performed using the maximum parsimony (MP) and the neighbor-joining (NJ) methods with PAUP and PHYLIP, respectively. The sequence divergences between the diploid species varied from 0.5% to 4.68%. The resulting MP tree and NJ tree showed relatively congruent phylogenetic relationships among these species, except Ae. caudata. Particularly, Ae. speltoides was basal within the two trees. The paraphyletic relationships between Ae. speltoides and two species of Sect. Sitopsis, and between Ae. uniaristata and two species of Sect. Comopyrum were supported strongly. The ITS data suggest that currently recognized sections within Aegilops should be reconsidered.

Base Composition↗
PubMed1997

Molecular Identification and Localization of Filamentous Symbiotic Bacteria Associated with the Hydrothermal Vent Annelid Alvinella pompejana.

Alvinella pompejana is a polychaetous annelid that inhabits high-temperature environments associated with active deep-sea hydrothermal vents along the East Pacific Rise. A unique and diverse epibiotic microflora with a prominent filamentous morphotype is found associated with the worm's dorsal integument. A previous study established the taxonomic positions of two epsilon proteobacterial phylotypes, 13B and 5A, which dominated a clone library of 16S rRNA genes amplified by PCR from the epibiotic microbial community of an A. pompejana specimen. In the present study deoxyoligonucleotide PCR primers specific for phylotypes 13B and 5A were used to demonstrate that these phylotypes are regular features of the bacterial community associated with A. pompejana. Assaying of other surfaces around colonies of A. pompejana revealed that phylotypes 13B and 5A are not restricted to A. pompejana. Phylotype 13B occurs on the exterior surfaces of other invertebrate genera and rock surfaces, and phylotype 5A occurs on a congener, Alvinella caudata. The 13B and 5A phylotypes were identified and localized on A. pompejana by in situ hybridization, demonstrating that these two phylotypes are, in fact, the prominent filamentous bacteria on the dorsal integument of A. pompejana. These findings indicate that the filamentous bacterial symbionts of A. pompejana are epsilon Proteobacteria which do not have an obligate requirement for A. pompejana.

Journal Article↗
PubMed2006

Identification of intergenomic recombinations in unisexual salamanders of the genus Ambystoma by genomic in situ hybridization (GISH).

Unisexual salamanders in the genus Ambystoma (Amphibia, Caudata) are endemic to eastern North America and are mostly all-female polyploids. Two to four of the bisexual species, A. laterale, A. jeffersonianum, A. texanum and A. tigrinum, contribute to the nuclear genome of unisexuals and more than 20 combinations that range from diploid to pentaploid have been identified in this complex. Because the karyotypes of the four bisexual species are similar, homologous and homoeologous chromosomes in the unisexuals can not be distinguished by conventional or banded karyotypes. We chose two widespread unisexual genomic combinations (A.laterale-2 jeffersonianum [or LJJ] and A. 2 laterale-jeffersonianum [or LLJ]) and employed genomic in situ hybridization (GISH) to identify the genomes in these unisexuals. Under optimum conditions, GISH reliably distinguishes the respective chromosomes attributed to both A.laterale and A. jeffersonianum. Of four populations examined, two were found to have independently evolved homoeologous recombinants that persist in both LJJ and LLJ individuals. Our results refute the previous hypothesis of clonal integrity and independent evolution of the genome combinations in these unisexuals. Our data provide evidence for intergenomic interactions between maternal chromosomes during meiosis in unisexuals and help to explain previously observed non-homologous bivalents and/or quadrivalents among lampbrush chromosomes that were possibly initiated by partial homosequential pairing among the homo(eo)logues. To explore the utility of GISH in other members of the complex, probes developed from A. laterale were also applied to unisexuals that contained A. tigrinum and A. texanum genomes. GISH is an effective tool that can be used to identify and to quantify genomic constituents and to investigate intergenomic interactions in unisexual salamanders. GISH also has potential application to examine possible genomic evolution in other unisexuals.

Ambystoma↗
PubMed2004

An Ambystoma mexicanum EST sequencing project: analysis of 17,352 expressed sequence tags from embryonic and regenerating blastema cDNA libraries.

BACKGROUND: The ambystomatid salamander, Ambystoma mexicanum (axolotl), is an important model organism in evolutionary and regeneration research but relatively little sequence information has so far been available. This is a major limitation for molecular studies on caudate development, regeneration and evolution. To address this lack of sequence information we have generated an expressed sequence tag (EST) database for A. mexicanum. RESULTS: Two cDNA libraries, one made from stage 18-22 embryos and the other from day-6 regenerating tail blastemas, generated 17,352 sequences. From the sequenced ESTs, 6,377 contigs were assembled that probably represent 25% of the expressed genes in this organism. Sequence comparison revealed significant homology to entries in the NCBI non-redundant database. Further examination of this gene set revealed the presence of genes involved in important cell and developmental processes, including cell proliferation, cell differentiation and cell-cell communication. On the basis of these data, we have performed phylogenetic analysis of key cell-cycle regulators. Interestingly, while cell-cycle proteins such as the cyclin B family display expected evolutionary relationships, the cyclin-dependent kinase inhibitor 1 gene family shows an unusual evolutionary behavior among the amphibians. CONCLUSIONS: Our analysis reveals the importance of a comprehensive sequence set from a representative of the Caudata and illustrates that the EST sequence database is a rich source of molecular, developmental and regeneration studies. To aid in data mining, the ESTs have been organized into an easily searchable database that is freely available online.

Ambystoma↗
PubMed2002

Comparative peptidomics of the endocrine pancreas: islet hormones from the clawed frog Xenopus laevis and the red-bellied newt Cynops pyrrhogaster.

Electrospray mass spectrometry coupled with reverse-phase HPLC was used to identify peptides in the molecular mass range 3000-6000 Da in extracts of the pancreata of the clawed frog Xenopus laevis (Anura: Pipidae) and the red-bellied newt Cynops pyrrhogaster (Caudata: Salamandridae). Amino acid sequences of insulins, peptides derived from the post-translational processing of proglucagons and pancreatic polypeptide were determined by automated Edman degradation. Three molecular forms of insulin were isolated from the tetraploid organism X. laevis that represent insulin-1 and insulin-2, as deduced from the nucleotide sequences of previously characterized cDNAs, and a third form which differed from insulin-2 by the single amino acid substitution Asp(21)-->Glu in the B-chain. The amino acid sequence of Xenopus preproglucagons (genes 1 and 2 ) may be deduced from the nucleotide sequences of cDNAs but the pathways of post-translation processing of the precursors are not known. Two molecular forms of glucagon with 36 amino acids, derived from genes 1 and 2 and representing glucagon-29 extended from its C terminus by different heptapeptides, and five molecular forms of glucagon-like peptide 1 (GLP-1) were isolated. The GLPs represent proglucagon-(77-113), -(122-158) and -(160-191) from gene 1, and proglucagon-(77-113) and -(160-191) from gene 2. A single molecular form of insulin, glucagon-36, a C-terminally alpha-amidated GLP-1 with 30 amino acid residues, a 33 amino acid residue GLP-2 and pancreatic polypeptide were isolated from the pancreatic extract of the diploid organism C. pyrrhogaster. This study has illustrated the power of electrospray mass spectrometry for the rapid and reliable identification of peptides in chromatographic fractions without the need to use radioimmunoassay, radioreceptor assay or bioassay.

Amino Acid Sequence↗
PubMed1981

Some properties of starches of grain amaranths and several millets.

Starch granules were prepared from seeds of Amaranthus hypochondriacus L., A. caudatus L., proso millet, Japanese barnyard millet and foxtail millet. Amylose contents and the distribution of alpha-1,4 linked chain of amylopectin were determined by gel filtration of isoamylase-debranched starches. Some physical and chemical properties of the starches were also examined by scanning electron microscopy, X-ray diffractometry, photopastegraphy, and differential scanning calorimetry, together with starch-granule susceptibility to amylases. The existence of both normal and waxy types in the same species of a grain amaranth, A. hypochondriacus L., was confirmed. A. caudatas starches were identified to consist of mainly typical amylopectin and 5-7% amylose. The starches have some unique properties, namely, high starch-granule susceptibility values to amylases as well as those of A. hypochondriacus and unique pasting properties.

Amylases↗
PubMed1999

Molecular cytogenetic analysis of Aegilops cylindrica host.

The genomic constitution of Aegilops cylindrica Host (2n = 4x = 28, DcDcCcCc) was analyzed by C-banding, genomic in situ hybridization (GISH), and fluorescence in situ hybridization (FISH) using the DNA clones pSc119, pAs1, pTa71, and pTA794. The C-banding patterns of the Dc- and Cc-genome chromosomes of Ae. cylindrica are similar to those of D-and C-genome chromosomes of the diploid progenitor species Ae. tauschii Coss. and Ae. caudata L., respectively. These similarities permitted the genome allocation and identification of the homoeologous relationships of the Ae. cylindrica chromosomes. FISH analysis detected one major 18S-5.8S-25S rDNA locus in the short arm of chromosome 1Cc. Minor 18S-5.8S-25S rDNA loci were mapped in the short arms of 5Dc and 5Cc. 5S rDNA loci were identified in the short arm of chromosomes 1Cc, 5Dc, 5Cc, and 1Dc. GISH analysis detected intergenomic translocation in three of the five Ae. cylindrica accessions. The breakpoints in all translocations were non-centromeric with similar-sized segment exchanges.

Chromosome Banding↗
PubMed2004

Mycodiversity on a dead stem of the giant hogweed--Heracleum mantegazzianum Sommer et Levier.

During our investigations on microfungi in the Ruhr area we were able to find the remarkable mycodiversity of different genera and species on dead stems of Heracleum mantegazzianum, a Neophyt for the European flora. Altemaria alternata (FR.FR.) KEISSL., Camarosporium spec., Cladosporium herbarum (PERS.) LINK, Colletotrichum dematium (PERS. Ex FR.) GOVE, Dactylella armandii YADV., Dasyscyphus mollissimus (LASCH.) DENNIS, Dendryphion comosum WALLR., Endophragmia hyalosperma (CORDA) MORGAN-JONES & COLE, Epicoccum purpurescens EHRENB., Gliomastix luzulae (FUCKEL) MASON, Hymenoscyphus herbarum (PERS.) DENNIS, Lasiosphaeria caudata (FUCKEL) MASON, Lophiostoma caulium (FR.) CES. & de NOT, Periconia byssoides PERS., Phoma complanata (TODE EX FR.) DESM., Phoma longissima (PERS.) WESLEND., Pirottaea cf. nigrostriata GRADDON, Pleospora herbarum (PERS.) RABENH. EX. CES. & de NOT, Pleurophragmium parvisporum (PREUSS) HOLUBOVA-JECHOVA, Pyrenopeziza chailletii FUCKEL, Rhizopus stolonifer (EHRENB. FR.) VUILL, Sclerotina sclerotiorum (LIB.) DE BY., Septofusidium herbarum (BROWN & SMITH) SAMSON, Torula herbarum (PERS.) LINK, Trichoderma koningii OUDEM, Volutella melaloma BERK. & BR. The sample is located in the Herbarium ESS Mycotheca Parva, Collection G.B. Feige/N. Ale-Agha.

Alternaria↗
PubMed1990

[Effects of difenin on experimental parkinsonian syndrome].

The aim of this study was to investigate the effect of difenin on parkinsonian syndrome and the generator of pathologically enhanced excitation (GPEE) in the caudata nuclei (CN). Repeated i. p. administration of MPTP in 12 month rats induced oligokinesis and rigidity followed by the high amplitude slow and rapid waves in the CN and in sensorimotor cortex (SC). The changes of the electrical activity in the CN were more prominent then in SC. I.p. injection of difenin (20 mg/kg) resulted in an increase of motor activity and decrease of rigidity in rats. The reduction of extrapyramidal symptoms were correlated with at the inhibition of GPEE in the CN. These data suggest that difenin can be a part of the complex pathogenetic therapy of parkinsonian syndrome.

1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine↗
PubMed1976

[Histologic data on the lingual glands in various anuran amphibians].

The anuran Amphibians have a well developed tongue which is either protractile or attached to the floor of the buccal cavity according to the species. The lingual glands of the papillary dorsal side consist of simple tubules. The stratified epithelium of the ventral and lateral sides of the tongue is composed of mucous and muco-serous cells inserted between the covering ciliated cells. Filiform pappillae and glands have a simple epithelium with numerous outer ciliated cells and glandular cells. The latter eleborate a product rich in glycosaminoglycans, more or less acid according to the species, associated with proteins. The lingual gland secretion is composed of proteins; when present, glycosaminoglycans are less abundant and less acid than those produced by the outer glandular cells. The histochemical and ultrastructural characters of the lingual glands of Anurans are compared to those of Apoda and Caudata previously studied by the same techniques.

Amphibians↗
PubMed1980

[Amphibian jelly envelopes (proteins secreted by the oviduct) and their role in fertilization].

The jelly envelopes, surrounding amphibian eggs and playing a major part in the initial steps of fertilization, are deposited around the eggs as they traverse the different parts of the oviduct. These envelopes form 5 to 8 morphologically distinct layers according to the species, i.e. in Anura and Caudata they are organized differently, and are composed of about ten different macromolecular components (glycoproteins). The innermost layer is rich in sulfate and poor in fucose, a carbohydrate abundant in the other layers. This is due to a fucosyltransferase deficit in the cranial part of the oviduct secreting this layer. The cranial and the medial oviduct secretory products show a lectin carbohydrate-like reaction which is pH-dependent and can be inhibited by carbohydrates like glucuronolactone. This reaction has made it possible to isolate, by affinity chromatography, the main secretory component of the cranial oviduct (Spop). This paper discusses the main functions of the jelly layers of the egg, with particular reference to fertilization. The role of their macromolecular components in sperm capacitation is clear in Anura; experimental investigation in Urodeles is more difficult. We propose several hypotheses to explain the molecular interactions leading to capacitation. Block to polyspermy in amphibians is discussed.

Amphibians↗
PubMed1995

The nigrostriatal dopamine system and the development of hypertension in the spontaneously hypertensive rat.

Several observations reported in the literature reveal a role of brain catecholaminergic systems in the development of hypertension in spontaneously hypertensive rats (SHR). As reviewed here, our results obtained with intracerebroventricular injections of 6-hydroxydopamine in your SHR point in particular to the involvement of the nigrostriatal dopamine system. The electrically stimulated release of radiolabeled dopamine in vitro from caudate nucleus slices of SHR was lower than that in slices of normotensive Wistar-Kyoto rats (WKY). Using an in vivo microdialysis method, we found that the extracellular concentration of dopamine and the metabolite DOPAC was lower in the caudate nucleus of conscious SHR than in that of WKY. We also studied the effects of lesions of the pars compacta of the substantia nigra of 4 week-old SHR and WKY, 1) on blood pressure and heart rate, 2) on the concentrations of dopamine and metabolites in the caudate nucleus and 3) on the release of radiolabeled dopamine from caudate nucleus slices using an in vitro superfusion method, 6 weeks following lesioning. Substantia nigra lesions caused a profound attenuation of the development of hypertension in SHR, with no effect on heart rate. The ratios DOPAC/dopamine and HVA/dopamine were lower in sham-treated SHR than in sham-treated WKY pointing to a lower turnover of dopamine in SHR. Six weeks after lesioning, the concentrations of dopamine were decreased in the caudate nucleus of both strains. At this time, the stimulus-evoked release of dopamine from the remaining terminals was significantly increased in caudate nucleus slices of SHR but not in slices of WKY. Thus, whereas the release of dopamine from caudata nucleus slices is lower in sham-treated SHR than in sham-treated WKY, lesioning of the substantia nigra results in a similar release of dopamine from caudate nucleus slices of lesioned SHR and sham-treated WKY. This normalization of dopaminergic activity may be the causal factor underlying the attenuation of the development of hypertension in SHR after bilateral lesioning of the pars compacta, of the substantia nigra.

3,4-Dihydroxyphenylacetic Acid↗
PubMed1977

Haemaphysalis (allophysalis) danieli, sp. n. (ixodoidea: ixodidae), female and tentatively associated immature stages from high mountains of northern Pakistan and Afghanistan.

Haemaphysalis (Allophysalis) danieli sp. n. is described from a female taken from alpine vegetation in Swat, Pakistan. Fifty-one nymphal and larval ticks tentatively associated with this taxon are from hamsters, field mice, voles, and marmots (Rodentia), Cricetulus migratorius, Apodemus flavicollis, alticola roylei, and Marmota caudata, and from pikas (Lagomorpha), Ochotona roylei, in Gilgit and Hazara districts of Pakistan and in Badakhashan Province of Afghanistan. Collecting localities are in the western Himalayan mountain complex between 2,310 and 4,000 m altitude and between 35degrees08' and 36degrees23' N and 71degrees51' and 74degrees02' E. This species is most closely related to the mountain-inhabiting H. (A9Y pospelovashtromae Hoogstraal of southern USSR and Mongolia and H. (A.) garhwalensis Dhanda and Bhat of northern India and Nepal.

Afghanistan↗
PubMed1995

Nematodes parasitic in fishes of cenotes (= sinkholes) of the Peninsula of Yucatan, Mexico. Part 1. Adults.

The present paper comprises a systematic survey of adult nematodes collected from fishes from cenotes (= sinkholes) of the Peninsula of Yucatan, southeastern Mexico, in 1993-1994. Examinations of a total of 533 fishes (17 species) originating from 39 cenotes from the Mexican states of Yucatan and Quintana Roo revealed the presence of the following nine nematode species: Rhabdochona (Rhabdochona) kidderi, Procamallanus (Spirocamallanus) rebecae, P. (S.) neocaballeroi, Philometroides caudata, Hysterothylacium cenotue. Pseudocapillaria yucatanensis, Paracapillaria rhamdiae, P. teixerafreitasi and Capillostrongyloides sp. (only females). Four species (R. kidderi, P. rebecae, P. neocaballeroi and Capillostrongyloides sp.) are briefly described and illustrated and some problems concerning their morphology, taxonomy, hosts and geographical distribution are discussed. Taxonomic changes include Procamallanus (Spirocamallanus) neocaballeroi (Caballero-Deloya. 1977) comb. n. and Procamallanus (Spirocamallanus) rebecae (Andrade-Salas, Pineda-López et García-Magaña, 1994) comb. n. The nematode fauna of fishes in cenotes of the Yucatan Peninsula shows its appurtenance to the Neotropical fauna with close affinities with that of fish nematodes from South America, but with a considerable degree of endemism.

Animals↗
PubMed1996

The interactive effect of some molluscicides on the inermediate host of human bilharziasis and their associated zoosporic fungi in the river Nile, Egypt.

Biomphalaria alexandrina and Bulinus truncatus are the main vectors of human Bilharziasis in Egypt. The mycotic inhabitants of both control and treated snails were surveyed at 7 and 15 days intervals. The two molluscicides affected more on the mortality of Biomphalaria alexandrina than Bulinus truncatus. The highest population of zoosporic fungi was collected from Biomphalaria alexandrina, the lowest from Bulinus truncatus. Copper sulphate was more effective than Bayluscide on the fungal species of both snails. Achlya, Dictyuchus and Saprolegnia were the common genera while Leptolegnia caudata and Pythium ultimum completely missed from treated snails. The total colonies of zoosporic fungi were lowered after. 15 days of treatment. The two molluscicides inhibited the cell division of both tested snails.

Animals↗