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A large plant beta-tubulin family with minimal C-terminal variation but differences in expression.

Tubulins, as the major structural component of microtubules (MT), are highly conserved throughout the entire eukaryotic kingdom. They consist of alpha/beta heterodimers. Both monomers, at least in multicellular organisms, are encoded by gene families. In higher plants up to eight beta-tubulin isotypes, mostly differing in their very C-termini, have been described. These variable beta-tubulin C-termini have been discussed in the context of functional microtubule diversity. However, in plants, in contrast to vertebrates, functional isotype specificity remains yet to be demonstrated. Unlike higher plants, unicellular green algae in general do not exhibit isotypic variations. The moss Physcomitrella patens is a phylogenetic intermediate between higher plants and green algae. We isolated six beta-tubulin genes from Physcomitrella, named PpTub1 to 6. We show that the exon/intron structure, with the exception of one additional intron in PpTub6, is identical with that of higher plants, and that some members of the family are differentially expressed. Moreover, we find that all Physcomitrella isotypes are highly conserved and, most strikingly, are almost identical within their C-terminal amino acids (aa). This evolutionary ancient and large beta-tubulin gene family without significant isotypic sequence variation points to a role of differential regulation in the evolution of plant tubulin isotypes.

Amino Acid Sequence↗

Identification and characterization of cDNAs encoding pentatricopeptide repeat proteins in the basal land plant, the moss Physcomitrella patens.

A large gene family encoding proteins with a pentatricopeptide repeat (PPR) motif exists in flowering plants but not in algae, fungi, or animals. This suggests that PPR protein genes expanded vastly during the evolution of the land plants. To investigate this possibility, we analysed PPR protein genes in the basal land plant, the moss Physcomitrella patens. An extensive survey of the Physcomitrella expressed sequence tag (EST) databases revealed 36 ESTs encoding PPR proteins. This indicates that a large gene family of PPR proteins originated before the divergence of the vascular plant and moss lineages. We also characterized five full-length cDNAs encoding PPR proteins, designated PPR513-10, PPR566-6, PPR868-14, PPR986-12, and PPR423-6. Intracellular localization analysis demonstrated two PPR proteins in chloroplasts (cp), whereas the cellular localization of the other three PPR proteins is unclear. The genes of the cp-localized PPR513-10 and PPR566-6 were expressed differentially in protonemata grown under different light-dark conditions, suggesting they have distinctive functions in cp. This is the first report and analysis of genes encoding PPR proteins in bryophytes.

Amino Acid Motifs↗

A fast and flexible PEG-mediated transient expression system in plants for high level expression of secreted recombinant proteins.

Plant expression systems offer a valuable alternative to traditional systems for the production of recombinant biopharmaceuticals. A highly efficient polyethyleneglycol (PEG)-mediated transient expression system for secreted recombinant proteins in plants has been developed. The human vascular endothelial growth factor 121 (rhVEGF) has been successfully expressed and efficiently secreted into the culture medium by transiently transformed moss protoplasts. In order to obtain secretion efficiency data, different expressed signal peptides were analysed and time course studies were performed with expression constructs containing different promoters. The transformation procedure was optimised for high level expression (up to 10 microg/ml) and successfully performed even with a transgenic glyco-engineered strain lacking plant-specific immunogenic sugar residues in N-glycans. The amount of rhVEGF was produced in such quantity that it allowed for the analysis of biological activity, silver-staining and Western blotting, revealing the correct formation and processing of the homodimer. This fast and flexible transient expression system enables feasibility studies and construct optimisation to be concluded within a few days, thus avoiding the time consuming step of having to generate stably transformed lines.

Bryopsida↗

Radiocesium accumulation in mosses from highlands of Serbia and Montenegro: chemical and physiological aspects.

The aim of this work was (i) to determine the activity levels of 137Cs in mosses from highland ecosystems of Serbia and Montenegro, (ii) to find out if radiocesium is associated with essential biomacromolecules, and (iii) to investigate 137Cs distribution among intracellular compartments. It was found that biomolecules of mosses do not bind significant amounts of radiocesium (2.3-3.3% of the absorbed 137Cs), a behavior that was independent of the moss species. Cellular fractionation of mosses showed that membranes are the primary 137Cs-binding sites at the cellular level. They contained 26.1-43.1% of the initial radiocesium activity. It seems that 137Cs-binding molecules in different mosses are of similar chemical nature, and their distribution between various cellular compartments is not species specific.

Bryopsida↗

Loss of GH3 function does not affect phytochrome-mediated development in a moss, Physcomitrella patens.

Auxin-induced gene expression is described for a variety of different genes including the SAUR-, Aux/IAA- and GH3-families, members of which have been found in seed plants. The precise function of GH3-like proteins in plant development is not well characterised yet. Mutant analysis in Arabidopsis thaliana indicates a possible role for GH3-like proteins in connecting auxin and light signal transduction. Here, we report the isolation of three different GH3-like homologues from a lower land plant, the moss Physcomitrella patens. Two of the GH3-like homologues were chosen for further characterisation. Both genes are expressed in gametophytic tissues, with expression starting very early in moss development. Knockout plants were generated and analysed. In comparison to white-light growth, cultivation of the wild type and knockout plants under red-light conditions resulted in a delay in gametophytic tissue development. The leafy moss plants displayed an elongated phenotype. Growth delay and elongation were even stronger under far-red light conditions. No obvious differences between wild type and knockout plants could be detected under the examined conditions, indicating functional redundancy of the two genes.

Base Sequence↗

Rapid degradation of starch in chloroplasts and concomitant accumulation of soluble sugars associated with ABA-induced freezing tolerance in the moss Physcomitrella patens.

Abscisic acid (ABA) has been postulated to play a role in the development of freezing tolerance during the cold acclimation process in higher plants, but its role in cold tolerance in tower land plants has not been elucidated. The moss Physcomitrella patens rapidly developed freezing tolerance when its protonemata were grown in a medium containing ABA, with dramatic changes in the LT50 value from -2 degrees C to over -10 degrees C. We examined physiological and morphological alterations in protonema cells caused by ABA treatment to elucidate early cellular events responsible for rapid enhancement of freezing tolerance. Microscopic observations revealed that ABA treatment for 1 day resulted in a dramatic alteration in the appearance of intracellular organelles. ABA-treated cells had slender chloroplasts, with a reduced amount of starch grains, in comparison with those of non-treated cells. The ABA-treated cells also had several segmented vacuoles while many of non-treated cells had one central vacuole. When frozen to -4 degrees C, freezing injury-associated ultrastructural changes such as formation of aparticulate domains and fracture-jump lesions were frequently observed in the plasma membrane of non-treated protonema cells but not in that of ABA-treated cells. The ABA treatment increased the osmotic concentration of the protonema cells, in correlation with accumulation of free soluble sugars. These results suggest that ABA-induced accumulation of soluble sugars, associated with morphological changes in organelles, mitigated freezing-induced structural damage in the plasma membrane, eventually leading to enhancement of freezing tolerance in the protonema cells.

Abscisic Acid↗

Mapping of the Physcomitrella patens proteome.

The moss Physcomitrella patens is unique among land plants due to the high rate of homologous recombination in its nuclear DNA. The feasibility of gene targeting makes Physcomitrella an unrivalled model organism in the field of plant functional genomics. To further extend the potentialities of this seed-less plant we aimed at exploring the P. patens proteome. Experimental conditions had to be adopted to meet the special requirements connected to the investigations of this moss. Here we describe the identification of 306 proteins from the protonema of Physcomitrella. Proteins were separated by two dimensional electrophoresis, excised form the gel and analysed by means of mass spectrometry. This reference map will lay the basis for further profound studies in the field of Physcomitrella proteomics.

Amino Acid Sequence↗

Accumulation of theanderose in association with development of freezing tolerance in the moss Physcomitrella patens.

Mosses are known to have the ability to develop high degrees of resistance to desiccation and freezing stress at cellular levels. However, underlying cellular mechanisms leading to the development of stress resistance in mosses are not understood. We previously showed that freezing tolerance in protonema cells of the moss Physcomitrella patens was rapidly increased by exogenous application of the stress hormone abscisic acid (ABA) [Minami, A., Nagao, M., Arakawa, K., Fujikawa, S., Takezawa, D., 2003a. Abscisic acid-induced freezing tolerance in the moss Physcomitrella patens is accompanied by increased expression of stress-related genes. J. Plant Physiol. 160, 475-483]. Herein it is shown that protonema cells with acquired freezing tolerance specifically accumulate low-molecular-weight soluble sugars. Analysis of the most abundant trisaccharide revealed that the cells accumulated theanderose (G6-alpha-glucosyl sucrose) in close association with enhancement of freezing tolerance by ABA treatment. The accumulation of theanderose was inhibited by cycloheximide, an inhibitor of nuclear-encoded protein synthesis, coinciding with a remarkable decrease in freezing tolerance. Furthermore, theanderose accumulation was promoted by cold acclimation and treatment with hyperosmotic solutes, both of which had been shown to enhance cellular freezing tolerance. These results reveal a novel role for theanderose, whose biological function has been obscure, in high freezing tolerance in moss cells.

Abscisic Acid↗

Cloning and characterization of chalcone synthase from the moss, Physcomitrella patens.

Since the early evolution of land plants from primitive green algae, flavonoids have played an important role as UV protective pigments in plants. Flavonoids occur in liverworts and mosses, and the first committed step in the flavonoid biosynthesis is catalyzed by chalcone synthase (CHS). Although higher plant CHSs have been extensively studied, little information is available on the enzymes from bryophytes. Here we report the cloning and characterization of CHS from the moss, Physcomitrella patens. Taking advantage of the available P. patens EST sequences, a CHS (PpCHS) was cloned from the gametophores of P. patens, and heterologously expressed in Escherichia coli. PpCHS exhibited similar kinetic properties and substrate preference profile to those of higher plant CHS. p-Coumaroyl-CoA was the most preferred substrate, suggesting that PpCHS is a naringenin chalcone producing CHS. Consistent with the evolutionary position of the moss, phylogenetic analysis placed PpCHS at the base of the plant CHS clade, next to the microorganism CHS-like gene products. Therefore, PpCHS likely represents a modern day version of one of the oldest CHSs that appeared on earth. Further, sequence analysis of the P. patens EST and genome databases revealed the presence of a CHS multigene family in the moss as well as the 3'-end heterogeneity of a CHS gene. Of the 19 putative CHS genes, 10 genes are expressed and have corresponding ESTs in the databases. A possibility of the functional divergence of the multiple CHS genes in the moss is discussed.

Acyltransferases↗

The effect of sampling design on extensive bryomonitoring surveys of air pollution.

In this study, we investigated if the different sampling designs normally used in extensive bryomonitoring surveys of air pollution allow compliance with the objectives proposed in the 'Heavy Metals in European Moss' project. For this, we have used data on concentrations of As, Cu, Se and Zn from five moss sampling surveys carried out in Galicia (NW Spain), using three types of sampling design: regular grid, sampling sites inside squares and the strategy recommended in the guidelines for European surveys. To study the effect of the interaction between the sampling design and the spatial pattern of the presence of contaminants, we have used a simulated and a real pattern onto which we superimposed the three sampling designs considered. We found that only random sampling and grid sampling allow compliance with the proposed objectives, and we discuss the advantages of the latter over the former. The data corresponding to studies using different sampling designs are not comparable, and in future large-scale surveys, the same design must be used if the results are to be compared and if valid conclusions are to be reached. The scale of the grid determines the scale to which the objectives are complied with, so that for correct standardization of the technique, and taking into account the most commonly used grid sizes, we recommend a grid size of 30 x 30 or 32 x 32 km. When additional samplings are required, the size of the grid size should be 30/2(n) or 32/2(n) km.

Air Pollution↗

A comparison of native and transplanted Fontinalis antipyretica Hedw. as biomonitors of water polluted with heavy metals.

Native and transplanted mosses of the species Fontinalis antipyretica were studied to assess their capacity as biomonitors of heavy metals. Assays were carried out with transplanted mosses (sampled from an unpolluted control stream) exposed for 60 days to five streams polluted with heavy metals. At the same time, native mosses were collected from the exposure sites. Concentrations of N, P, K, Ca, Mg, S, Fe, Al, Ba, Cd, Co, Cr, Cu, Mn, Ni, Pb, V, and Zn were determined in the mosses (native and transplants), stream waters, and sediments of both exposure and control sites. The results showed that the transplanted mosses accumulated significantly more Al, Cr, Cu, Pb, V, and Zn than the native mosses. The concentrations of Co and Mn in all streams were significantly higher in the native mosses.

Bryopsida↗

The use of the aquatic moss Fontinalis antipyretica L. ex Hedw. as a bioindicator for heavy metals: 3. Cd2+ accumulation capacities and biochemical stress response of two Fontinalis species.

We studied heavy metal stress responses of two Fontinalis species, F. antipyretica and F. dalecarlica, collected from two habitats in Germany and Canada. The capacities of the two species for extracellular adsorption (biosorption) and intracellular uptake (bioaccumulation) of Cadmium (Cd2+) were investigated in the laboratory. Time-dependent Cd2+ adsorption by cell wall and intracellular uptake differed significantly between the two species. These differences were related to the number of Cd2+ binding sites, resulting from differences in leaflet surface and cell wall composition. Glutathione (GSH) levels in response to Cd2+ exposure were monitored over a 10-day period. GSH synthesis differed significantly between the two species. Both Fontinalis species appear to be suitable for heavy metal biomonitoring in aquatic habitats.

Adsorption↗

Spatial patterns of cadmium and lead deposition on and adjacent to National Park Service lands in the vicinity of Red Dog Mine, Alaska.

Heavy metal escapement associated with ore trucks is known to occur along the DeLong Mountain Regional Transportation System (DMTS) haul road corridor in Cape Krusenstern National Monument, northwest Alaska. Heavy metal concentrations in Hylocomium splendens moss (n = 226) were used in geostatistical models to predict the extent and pattern of atmospheric deposition of Cd and Pb on Monument lands. A stratified grid-based sample design was used with more intensive sampling near mine-related activity areas. Spatial predictions were used to produce maps of concentration patterns, and to estimate the total area in 10 moss concentration categories. Heavy metal levels in moss were highest immediately adjacent to the DMTS haul road (Cd > 24 mg/kg dw; Pb > 900 mg/kg dw). Spatial regression analyses indicated that heavy metal deposition decreased with the log of distance from the DMTS haul road and the DMTS port site. Analysis of subsurface soil suggested that observed patterns of heavy metal deposition reflected in moss were not attributable to subsurface lithology at the sample points. Further, moss Pb concentrations throughout the northern half of the study area were high relative to concentrations previously reported from other Arctic Alaska sites. Collectively, these findings indicate the presence of mine-related heavy metal deposition throughout the northern portion of Cape Krusenstern National Monument. Geospatial analyses suggest that the Pb depositional area extends 25 km north of the haul road to the Kisimilot/Iyikrok hills, and possibly beyond. More study is needed to determine whether higher moss heavy metal concentrations in the northernmost portion of the study area reflect deposition from mining-related activities, weathering from mineralized Pb/Zn outcrops in the broader region, or a combination of the two. South of the DMTS haul road, airborne deposition appears to be constrained by the Tahinichok Mountains. Heavy metal levels continue to diminish south of the mountains, reaching a minimum in the southernmost portion of the study area near the Igichuk Hills (45 km from the haul road). The influence of the mine site was not studied.

Alaska↗

Mapping the results of extensive surveys: the case of atmospheric biomonitoring and terrestrial mosses.

In this paper we discuss some difficulties associated with the process of constructing maps of pollution from data obtained in surveys covering extensive areas. As we show here, these problems may be wide-ranging but are seldom recognized by investigators. The origin of the problems is the existence of multiple sources of pollution in the study area, each of different intensity and affecting areas of different extent. The particular spatial structure of the pollution sources interacts with the spatial layout of the samples, resulting in data sets with distributions that are very different from the usually assumed normal distribution, and characterized by heavy tails and gross outliers. These distributions arise because of incomplete sampling of small-scale pollution processes (i.e. those occurring on a spatial scale smaller than the spatial scale of the sampling grid). After discussion of the potential problems and appropriate techniques for analyzing this kind of data, we applied the proposed techniques to a real data set of heavy metal contents in terrestrial mosses. From the exercise we concluded that a) the first step in analysis of this kind of data must be to check for the presence of spatial structure on scales larger than the sampling grid, to avoid mapping noise, and b) the map generated must not contain information about pollution sources with a spatial scale smaller than the spatial scale of the sampling grid. We present and discuss the performance of robust statistical methods of testing for spatial structure (based on robust variograms and randomization testing) and of filtering the small-scale spatial processes (using median-polishing) prior to mapping.

Atmosphere↗

Atmospheric mercury in Norway: contributions from different sources.

The environmental loadings of national Norwegian mercury emissions compared to the loadings of atmospheric long range transported mercury have been estimated using national emission data and EMEP model data. The results indicate that atmospheric long-range transport to Norway is somewhat larger than the national Norwegian emissions of mercury. Atmospheric deposition of mercury has been studied using data from Norwegian monitoring programs on mercury in precipitation, mosses, natural surface soils, and lake sediments. Precipitation data show no significant time trend during 1990-2002, whereas moss samples show similar concentrations from 1985 to 1995, but a 30% decrease from 1995 to 2000. Concentrations of mercury in peat cores and reference sediments indicate that the current mercury levels measured in surface sediments, surface soils and mosses at background sites in Norway are substantially affected by long-range atmospheric transport.

Air Movements↗

The influence of a city on element contents of a terrestrial moss (Hylocomium splendens).

Forty terrestrial moss (Hylocomium splendens) samples were collected along a 120-km-long south-north transect running through Norway's largest city Oslo. Concentrations of 29 chemical elements (Ag, Al, Au, Ba, Bi, Ca, Cd, Co, Cr, Cu, Fe, Hg, K, La, Mg, Mn, Mo, Na, Ni, P, Pb, Pt, S, Sb, Sr, Th, Ti, and Zn) and values for loss on ignition (475 degrees C) are reported. Silver (Ag), Al, Au, Bi, Cd, Co, Cr, Cu, Fe, Mo, Ni, Pb, Pt, Sb, Th, Ti, and Zn all show a characteristic Oslo peak when element concentrations are plotted against location of the sample site along the transect. Gold (Au) and Pt show the greatest relative enrichment of all elements in the city (ca. 10x "background"). Titanium (Ti), which is related to local minerogenic dust rather than anthropogenic emissions, shows a significant peak in Oslo. Loss on ignition, a measure of the amount of organic material in a sample, shows a negative peak in Oslo and at sites close to a known dust source. Input of fine dust thus appears to dominate many of the observed element concentrations in moss. The concentrations of Na are clearly influenced by the input of marine aerosols and show decreasing concentrations from south (near Oslo Fjord) to north (inland). The major plant nutrients Ca, K, Mg, P and S, as well as Hg, are the few elements displaying no spatial dependency along the transect. Element concentrations reach background variation levels at a distance of 20-40 km from the city centre.

Adsorption↗

Effects on growth, photosynthesis and pigments of the freshwater moss Fontinalis antipyretica Hedw. after exposure to wood ash solution.

The application of wood ash from biofuel sources to the forest has been suggested as a source of nutrients for trees and for restoration of acidified soils and surface waters. Studies on the effects of wood ash on aquatic organisms and ecosystems are, however, few. This study investigated the effects of wood ash (0.1-10 g l(-1)) on the freshwater moss Fontinalis antipyretica Hedw., which has previously been shown to be a sensitive test organism for assessing environmental pollution. After nine weeks of treatment with wood ash, a significant effect of enhanced stem growth was observed at higher concentrations (1-10 g l(-1)). The concentration of wood ash was also correlated with the growth of secondary branches. Photosynthesis (oxygen evolution after 4 h of exposure to wood ash) was significantly lower in the alkaline treatments (no pH adjustment) compared to the treatments with neutral wood ash solutions (pH adjusted to 7.5). Furthermore, photosynthesis in the alkaline wood ash treatments was significantly lower compared to the control. The ratio between the optical density value before and after acidification (OD(665/665a)) was higher for all wood ash concentrations compared to the control. The OD(665/665a) values ranged from 1.52 to 1.61 and there was a difference, however not significant, between the alkaline and the neutral treatment at 10 g l(-1) wood ash. This study clearly demonstrated that wood ash may be beneficial for F. antipyretica at moderate concentrations (0.5-5 g l(-1)), particularly when a sudden increase in pH is avoided.

Bryopsida↗

Evolution of multiple paralogous adenosine kinase genes in the moss genus Hygroamblystegium: phylogenetic implications.

Maximum likelihood analyses of DNA sequences from two chloroplast regions, trnL-trnF and atpB-rbcL, and the internal transcribed spacers of 18S-5.8S-26S rRNA gene array, were performed to resolve species relationships within the moss genus Hygroamblystegium. Constraining morphospecies to monophyly resulted in significantly less likely trees for H. tenax, but not for the other species. The lack of support for most clades and the partial incongruence among topologies necessitated the use of another independent, more variable region, namely the adenosine kinase gene (adk). Sequences for adk were polymorphic but were present as multiple copies within individuals, making parology a problem for phylogenetic analyses. Adk evolution was reconstructed using a reconciled gene tree approach in which duplications and losses were minimized in the context of an estimate of the species tree derived from the analysis of the cp and nrDNA sequence data. Additional resolution of the species tree was then obtained by searching for reconstructions that further reduced adk duplications and losses. All the traditionally recognized morphospecies appeared to be polyphyletic in the resulting tree. Together with previous data from different molecular markers, the results support the interpretation that Hygroamblystegium represents a recent radiation in which molecular and morphological evolution have been uncoupled.

Adenosine Kinase↗