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PubMed2006

Effects of methanol on the thermodynamics of iron(III) [tetrakis(pentafluorophenyl)]porphyrin chloride dissociation and the creation of catalytically active species for the epoxidation of cyclooctene.

In a previous study, the authors showed that iron(III) [tetrakis(pentafluorophenyl)]porphyrin chloride [(F20TPP)FeCl] is catalytically inactive for cyclooctene epoxidation by hydrogen peroxide in acetonitrile but is catalytically active if the solvent contains methanol. It was suggested that the precursor to the active species is (F20TPP)Fe(OCH3) in methanol-containing solvents. The present study was aimed at evaluating this hypothesis. (F20TPP)Fe(OCH3) was synthesized and characterized by 1H NMR but was found to be inactive in both acetonitrile and methanol. Further investigation of the interactions of (F20TPP)FeCl with methanol in acetonitrile/methanol mixtures was then carried out using NMR. Two species, characterized by 1H NMR resonances at 82 and 65 ppm, were observed. The first resonance is attributed to the beta-pyrrole protons on molecularly dissolved (F20TPP)FeCl, whereas the second is attributed to beta-pyrrole protons of [(F20TPP)Fe]+ cations that are stabilized by coordination with a molecule of methanol, viz., [(F20TPP)Fe(CH3OH)]+. The relative concentration of [(F20TPP)Fe(CH3OH)]+ increases as the fraction of methanol in the solvent increases, suggesting that methanol facilitates the dissociation of (F20TPP)FeCl into cations and anions. A thermodynamic model of the dissociation is proposed and found to describe successfully the experimental observation over a range of solvent compositions, porphyrin concentrations, and temperatures. UV-visible spectroscopy was also used to validate the developed model. In addition, the observed rate constant for cyclooctene epoxidation was found to be proportional to the concentration of [(F20TPP)Fe(CH3OH)]+ calculated using the thermodynamic model, suggesting that this intermediate is a precursor to the species that catalyzes olefin epoxidation. The catalytic activity of [(F20TPP)Fe(CH3OH)]+ was further confirmed through experiments in which (F20TPP)Fe(OCH3) dissolved in methanol was reacted with HCl(aq). This reaction produced a product with an NMR peak at 65 ppm attributable to [(F20TPP)Fe(CH3OH)]+, and this mixture was found to have activity for cyclooctene epoxidation similar to that of (F20TPP)FeCl dissolved in methanol.

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PubMed1997

Electrochemistry of Oxygenation Catalysts. 3.(1) Thermodynamic Characterization of Electron Transfer and Solvent Exchange Reactions of Co(salen)/[Co(salen)](+) in DMF, Pyridine, and Their Mixtures.

Redox and ligand exchange reactions of the oxygenation catalyst (N,N '-bis(salicylidene)ethylenediaminato)cobalt(II), Co(salen), and its one-electron oxidation product, Co(salen)(+), are investigated in DMF, pyridine, and mixtures of these solvents. Electron transfers and solvent exchange reactions involving three neutral Co(II) and three cationic Co(III) complexes with different axially bound solvent molecules (two DMF, one DMF and one pyridine, or two pyridine molecules) form a three-rung ladder scheme. All formal potentials E(0) and equilibrium constants K in this scheme are determined from electrochemical or spectrophotometric experiments or the construction of thermodynamic cycles. The latter are also used to prove consistency of the results. Values for the E(0) and K are discussed in terms of the Co coordination geometry, solvent effects on the potentials, the thermodynamics of cross reactions, and the distribution of Co(II) and Co(III) species as a function of the solvent composition. Some peculiarities found in the oxygenation of flavonols and indoles are explained.

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PubMed1997

Thermodynamics of Inter- and Intramolecular Hydrogen Bonding in (Diphosphine)platinum(II) Diolate Complexes and Its Role in Carbohydrate Complexation Regioselectivity.

Thermodynamic data are reported for intermolecular hydrogen-bonding association of 1 and 2 equiv of phenol with [1,3-bis(diphenylphosphino)propane](phenylethane-1,2-diolato)platinum(II) ((dppp)Pt(Ped)) in dichloromethane solution: = -7.0 +/- 0.1 kcal/mol, = -7.7 +/- 0.4 kcal/mol, = -11.3 +/- 0.4 eu, and = -17.8 +/- 1.2 eu. For comparison, the thermodynamics for hydrogen bonding of phenol to triphenylphosphine oxide in dichloromethane were also determined: DeltaH degrees = -5.1 +/- 0.3 kcal/mol; DeltaS degrees = -8.8 +/- 1.0 eu. Competitive coordination exchange reactions have been used to determine the apparent intramolecular hydrogen bond strengths in (dppp)Pt(1,2-O,O'-glycerolate) and (dppp)Pt(1,2-O,O'-butane-1,2,4-triolate) in both dichloromethane (DeltaG(313) = -2.05 +/- 0.05 and -2.52 +/- 0.06 kcal/mol, respectively) and pyridine (DeltaG(313) = -0.62 +/- 0.03 and -0.82 +/- 0.03 kcal/mol, respectively). Based on these findings, the role of hydrogen-bonding interactions in determining the regioselectivities of complexation of carbohydrates to diphosphine Pt(II) is discussed.

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PubMed2002

Kinetic and thermodynamic preferences for the diastereoselective oxidative addition of H(2) to trans-Ir(PR(3))(2)(CO)Cl: monodentate chiral phosphines may impart exceptional degrees of diastereoselectivity.

Studies on square planar iridium complexes of the type trans-Ir(PR(3))(2)(CO)Cl, where PR(3) is PhP[(C(5)Me(4))](2), PhP[Me(2)C(4)H(6)], or PhP[Pr(i)(2)C(4)H(6)], demonstrate that monodentate chiral phosphines impart exceptional degrees of diastereoselectivity in the oxidative addition of H(2). Thus, the oxidative addition of H(2) to the two faces of the meso isomer (R,S)-trans-Ir(PR(3))(2)(CO)Cl proceeds with a kinetic diastereoselectivity which exceeds that for related square planar iridium complexes employing bidentate chiral phosphine ligands. Furthermore, the kinetically favored dihydride is not favored thermodynamically, and the magnitude of the inversion of the kinetic and thermodynamic selectivities is greater than has previously been observed using bidentate phosphines.

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PubMed2006

Selective formation of a self-assembling homo or hetero cavitand cage via metal coordination based on thermodynamic or kinetic control.

The selective formation of a homo or hetero cavitand cage composed of two molecules of tetra(4-pyridyl)-cavitand (1), tetrakis(4-cyanophenyl)-cavitand (2), or tetrakis(4-pyridylethynyl)-cavitand (3), and four molecules of Pd(dppp)(OTf)(2) (4) or Pt(dppp)(OTf)(2) (5) has been studied. A 1:1:4 mixture of 1 with more steric restriction, 2 with less coordination ability, and 4 or 5 specifically self-assembled into a hetero cavitand cage 6 or 7, respectively. In contrast, a 1:1:4 mixture of 2, 3, and 4 in CDCl(3) at room temperature assembled into the most labile homo cyanophenyl cavitand cage 8 and the most stable homo pyridylethynyl cavitand cage 9 in a 1:1 ratio. Upon heating at 50 degrees C, the thermodynamic equilibrium was shifted to a 1:1:1 mixture of 8, 9, and a hetero cavitand cage 10. When 1 equiv of 3 was added to 8 at room temperature, 8, 9, and 10 were formed initially in a 1:1:3 ratio and finally shifted to a 1:1:1 ratio. In the Pt-system, upon addition of 1 equiv of 3 to homo cyanophenyl cavitand cage 11 in CDCl(3) at room temperature, the ratio of hetero to homo cavitand cage (13/12) initially attained was 8.7 and remained above 5.6 at room temperature. Upon heating at 50 degrees C, 13 was finally converted to 11 and 12. Thus, the selectivity for the self-assembly of the homo or hetero cavitand cage is controlled by the balance between kinetic and thermodynamic stabilities of cages based on a combination of factors such as coordination ability and steric demand of the cavitands.

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PubMed2006

A thermodynamically stable nanophase material.

Nanoparticles are metastable relative to the equivalent bulk material due to the positive excess interfacial free energy (IFE). Previous studies have shown that, with increasing surface interaction strength, the IFE diminishes but remains positive. We describe an experimental multicomponent system in which a nanoscale ZnS material is thermodynamically favored and can be formed at the expense of bulk ZnS. In 17 M sodium hydroxide solution, at 230 degrees C, both 3 nm ZnS nanoparticles and bulk ZnS are transformed into sheetlike nanocrystals with a ZnS polytype structure. Our results are theoretically compatible with the concept of a negative IFE, although not with the assumption of constant interface composition. We clarify the meaning of an effective negative IFE and present the necessary conditions for strong chemical surface interactions to stabilize nanoscale inorganic materials relative to bulk matter. Our results show that synthesis methods employing thermodynamic controls can produce nanomaterials with novel morphology.

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PubMed2000

Molecular design of crown ethers. 21.(1,2) synthesis of novel double-armed benzo-15-crown-5 lariats and their complexation thermodynamics with light lanthanoid nitrates in acetonitrile

Three new disubstituted benzo-15-crown-5 derivatives (3-5) have been synthesized from 4',5'-bis(bromomethyl)benzo-15-crown-5 (2) and the corresponding alkanols in the presence of Na(2)S(2), and their complexation thermodynamics with light lanthanoid(III) nitrates (La-Gd) have been studied in anhydrous acetonitrile at 25 degrees C. Plots of K(S) against the reciprocal ionic diameter of lanthanoid exhibited monotonically declining pattern for the parent benzo-15-crown-5 (1) and 3 but showed a characteristic peak at Ce(3+) for 4 and 5. It is interesting to note that the simple extension of the alkyl side chains in 4 and 5 can alter the cation selectivity profiles of 1 and 3. Possessing two 2-oxapropyl groups, 3 gave a comparable K(S) for La(3+) but a significantly decreased K(S) for Ce(3+) compared with the corresponding values for 1, thus exhibiting an exceptionally high La(3+)/Ce(3+) selectivity of 11. Thermodynamically, the complexation of lanthanoid perchlorates with 1 is absolutely entropy-driven in acetonitrile, while the complexation of lanthanoid nitrates with 3-5 is primarily driven by exothermic enthalpy changes with accompanying moderate entropic gain or small entropic loss.

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PubMed2001

Facile and stereoselective access to nonracemic tricyclic cyclobutanes by asymmetric intramolecular Michael-aldol reaction: thermodynamic equilibrium and activation by iodonium ion.

Intramolecular Michael-aldol reactions of (-)-phenylmenthyl enoates tethered to cycloalkanone affords tricyclic cyclobutanes with high degrees of diastereochemical control. Kinetic and thermodynamic studies revealed that the Michael-aldol reaction is reversible under conditions in which trimethylsilyl iodide is used in the presence of hexamethyldisilazane at ambient temperature. Different levels of diastereoselectivity are observed when this cyclization process is carried out under kinetic vs thermodynamic conditions. Finally, an influence of added iodonium donors on the reaction rate has been noted.

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PubMed2002

Do deviations from bond enthalpy additivity define the thermodynamic stabilities of diradicals?

Deviations from bond enthalpy additivity (DeltaBEA) are frequently used to assess the thermodyamic stabilities of diradicals. (U)B3LYP/6-31G calculations have been performed in order to determine how well DeltaBEA values actually do reflect the thermodynamic stabilities of the triplet states of diradicals in which one or both nonbonding electrons occupy a delocalized pi orbital. The calculations find that different pathways for forming sigma,pi-diradicals, such as alpha,2- and alpha,4-dehydrotoluene (4 and 6), give DeltaBEA values that differ by ca. 1 kcal/mol. The path dependency of the DeltaBEA values is computed to be one order of magnitude larger for non-Kekulé hydrocarbon diradicals, such as m-benzoquinodimethane (12) and 1,3-dimethylenecyclobutane-2,4-diyl (15), than for sigma,pi-diradicals. Since the DeltaBEA values for forming 4, 6, 12, and 15 are all path dependent, we conclude that DeltaBEA values for diradicals with one or two delocalized, nonbonding pi electrons do not, in general, uniquely define the thermodynamic stabilities of the diradicals. Hence, DeltaBEA values should not be used for this purpose, especially for non-Kekulé hydrocarbon diradicals.

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PubMed2004

Study of the tautomeric equilibrium of pyridoxine in 1,4-dioxane/water mixtures by 13C nuclear magnetic resonance. Thermodynamic characterization and solvent effects.

A significant temperature dependence has been found for the (13)C NMR chemical shifts of pyridoxine in 10%, 20%, 30%, 40%, 50%, and 60% v/v 1,4-dioxane/water mixtures (pH = 7.0). The nuclei most sensitive to the temperature effect were C-3 and C-6 in all of the mixtures. This dependence has been explained on the basis of a thermally induced tautomeric equilibrium shift between the neutral and the dipolar forms of the pyridoxine molecule. The thermodynamic characterization of this tautomeric equilibrium, which interconverts quickly on the NMR time scale, has been achieved by considering the observed average (13)C NMR chemical shifts at different temperatures through fitting the experimental data to a theoretical curve. The fitting accuracy is greatly improved on using linear correlations between the average chemical shifts obtained from different nuclei at the same temperature. The methodology outlined above allows the DeltaH degrees value to be calculated for the tautomeric process and the chemical shifts of the pure extreme forms, i.e., neutral and dipolar, to be deduced. These values have been used to calculate the thermodynamic parameters of the tautomerization equilibrium in each dioxane/water mixture. The effect of solvent on the tautomeric equilibrium and the averaged chemical shift has been explained in terms of a multiparameter equation developed by Kamlet and Taft. The overall solvent effect is the sum of two different effects: the dipolarity and polarizability of the solvent and the ability of the solvent to act as a hydrogen-bond donor toward a solute.

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PubMed2005

Formation of a high coverage (3 x 3) NO phase on Pd(111) at elevated pressures: interplay between kinetic and thermodynamic accessibility.

Using in situ polarization modulation infrared reflection absorption spectroscopy and density functional theory calculations, a new high-coverage monomeric NO adsorption state on Pd(111) was observed and proposed to have a (3 x 3)-7NO structure. Formation of this high coverage NO phase was found to take place only at elevated pressure and temperature conditions showing that some of the accessible thermodynamic equilibrium states at elevated temperatures and pressures are thermodynamically unfavorable or kinetically hindered at lower temperatures and pressures. Our results emphasize the danger of extrapolating results from traditional surface science experiments performed under ultrahigh vacuum to elevated temperature and pressure conditions encountered in heterogeneous catalysis.

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PubMed2005

Thermodynamic and kinetic size limit of nanowire growth.

The universal models of nucleation thermodynamics and growth kinetics were established for nanowire growth upon metal-catalyst-assisted thermal chemical vapor transport on the basis of vapor-liquid-solid (VLS) mechanism. The thermodynamic and kinetic size limit of nanowire growth was deduced from the proposed model. Theoretical predictions are in agreement with experimental data.

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PubMed2005

Thermodynamic stability of chemical species in multiple reaction systems.

A general thermodynamic and stoichiometric method, recently developed by us to study subtle forms of stability/instability relations among chemical species, such as resonance and strain energies (Fishtik, I.; Datta, R. J. Phys. Chem. A 2004, 108, 5727-5739), is extended to stability relations in multiple chemical reaction systems. Namely, a new definition as well as a new algorithm of evaluation of the stabilities of chemical species, referred to as the overall stabilities, is proposed. It is further shown that the overall stabilities may be partitioned into a sum of contributions associated with a complete set of stoichiometrically unique response reactions (RERs). This finding reveals that the conventional stability analysis is stoichiometrically and thermodynamically inconsistent in that it involves only a part of RERs.

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PubMed2005

Dynamics and thermodynamics of water in PAMAM dendrimers at subnanosecond time scales.

Atomistic molecular dynamics simulations are used to study generation 5 polyamidoamine (PAMAM) dendrimers immersed in a bath of water. We interpret the results in terms of three classes of water: buried water well inside of the dendrimer surface, surface water associated with the dendrimer-water interface, and bulk water well outside of the dendrimer. We studied the dynamic and thermodynamic properties of the water at three pH values: high pH with none of the primary or tertiary amines protonated, intermediate pH with only the primary amines protonated, and low pH with all amines protonated. For all pH values we find that both buried and surface water exhibit two relaxation times: a fast relaxation ( approximately 1 ps) corresponding to the libration motion of the water and a slow ( approximately 20 ps) diffusional component related to the escaping of water from one domain to another. In contrast for bulk water the fast relaxation is approximately 0.4 ps while the slow relaxation is approximately 14 ps. These results are similar to those found in biological systems, where the fast relaxation is found to be approximately 1 ps while the slow relaxation ranges from 20 to 1000 ps. We used the 2PT MD method to extract the vibrational (power) spectrum and found substantial differences for the three classes of water. The translational diffusion coefficient for buried water is 11-33% (depending on pH) of the bulk value while the surface water is about 80%. The change in rotational diffusion is quite similar: 21-45% of the bulk value for buried water and 80% for surface water. This shows that translational and rotational dynamics of water are affected by the PAMAM-water interactions as well as due to the confinement in the interior of the dendrimer. We find that the reduction of translational or rotational diffusion is accompanied by a blue shift of the corresponding libration motions ( approximately 10 cm(-1) for translation, approximately 35 cm(-1) for rotation), indicating higher local force constants for these motions. These effects are most pronounced for the lowest pH, probably because of the increased rigidity caused by the internal charges. From the vibrational density of states we also calculate the enthalpies and entropies of the various waters. We find that water molecules are enthalpically favored near the PAMAM dendrimer: energy for surface water is approximately 0.1 kcal/mol lower to that in the bulk, and approximately 0.5-0.9 kcal/mol lower for buried water. In contrast, we find that both the buried and surface water are entropically unfavored: buried water is 0.9-2.2 kcal/mol lower than the bulk while the surface water is 0.1-0.2 kcal/mol lower. The net result is a thermodynamically unfavored state of the water surrounding the PAMAM dendrimer: 0.4-1.3 kcal/mol higher for buried water and 0.1-0.2 kcal/mol for surface water. This excess free energy of the surface and buried waters is released when the PAMAM dendrimer binds to DNA or metal ions, providing an extra driving force.

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PubMed2005

Thermodynamic characterization of fluids confined in heterogeneous pores by monte carlo simulations in the grand canonical and the isobaric-isothermal ensembles.

Materials presenting nanoscale porosity are able to condense gases in their structure. This "capillary condensation" phenomenon has been studied for more than one century. Theoretical models help to understand experimental results but fail in explaining all experimental features. Most of the time, the difficulties in making quantitative or even qualitative predictions are due to the geometric complexity of the porous materials, such as large pore size distribution, chemical heterogeneities, or pore interconnections. Numerical calculations (lattice gas models or molecular simulations) are of considerable interest to calculate the adsorption properties of a fluid confined in a porous model with characteristic sizes up to several tens of nanometers. For instance, the grand canonical Monte Carlo method allows one to compute the average amount of fluid adsorbed in the porous model as a function of the temperature and the chemical potential of the fluid. However, the grand potential, necessary for a complete characterization of the system, is not a direct output of the algorithm. It is shown in this paper that the use of the isobaric-isothermal (NPT) ensemble allows one to circumvent this problem; that is, it is possible to get in one single Monte Carlo run the absolute grand potential for any given thermodynamic state of the fluid. A simplified thermodynamic integration scheme is then used to evaluate the grand potential over the whole isotherm branch passing through this initially given point. Since the usual NPT technique is a priori limited to homogeneous pores, it is proposed, for the first time, to generalize this procedure to a pore presenting a chemical heterogeneity along its axis. The new method gives the same results as the previous for homogeneous pores and allows new predictions for chemically heterogeneous pores. Comparison with the full integration scheme shows that the proposed direct calculation is faster since it avoids multiple Monte Carlo runs and more precise because it avoids the possible cumulative errors of the integration procedure.

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PubMed2005

Thermodynamics and kinetics of hydroxide ion formation in 12 CaO x 7 Al2O3.

We have examined the thermodynamics and kinetics of hydroxide (OH-) ions that formed in cages of 12 CaO x 7 Al2O3 (C12A7) with nanoporous structures. It is confirmed using thermogravimetric-evolved gas analyses (TG-EGA) that hydration in C12A7 is mediated by a reaction between an oxide (O2-) ion in the cage and an H2O molecule in the atmosphere to form two OH- ions in the cages. To simply and exactly quantify the OH- content from infrared absorption measurements of OH-stretching band, we propose a method combined with a thermodynamic analysis, allowing the simultaneous determination of the molar extinction coefficient of the OH-band, enthalpy, and entropy for the hydration. Hydration enthalpy in C12A7 is extremely high compared with other oxides and was enhanced by the marked instability of O2- ion in the cage. Consequently, high solubility of OH- ion is retained up to unusually high temperatures. Furthermore, we determined diffusion coefficients of species relevant to the hydration process and demonstrated that inward diffusion of OH- ions is the rate-determining process.

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PubMed2006

Theoretical studies on the structures, thermodynamic properties, detonation properties, and pyrolysis mechanisms of spiro nitramines.

Density function theory (DFT) has been employed to study the geometric and electronic structures of a series of spiro nitramines at the B3LYP/6-31G level. The calculated results agree reasonably with available experimental data. Thermodynamic properties derived from the infrared spectra on the basis of statistical thermodynamic principles are linearly correlated with the number of nitramine groups as well as the temperature. Detonation performances were evaluated by the Kamlet-Jacobs equations based on the calculated densities and heats of formation. It is found that some compounds with the predicted densities of ca. 1.9 g/cm3, detonation velocities over 9 km/s, and detonation pressures of about 39 GPa (some even over 40 GPa) may be novel potential candidates of high energy density materials (HEDMs). Thermal stability and the pyrolysis mechanism of the title compounds were investigated by calculating the bond dissociation energies (BDE) at the B3LYP/6-31G level and the activation energies (E(a)) with the selected PM3 semiempirical molecular orbital (MO) based on the unrestricted Hartree-Fock model. The relationships between BDE, E(a), and the electronic structures of the spiro nitramines were discussed in detail. Thermal stabilities and decomposition mechanisms of the title compounds derived from the B3LYP/6-31G BDE and the UHF-PM3 E(a) are basically consistent. Considering the thermal stability, TNSHe (tetranitrotetraazaspirohexane), TNSH (tetranitrotetraazaspiroheptane), and TNSO (tetranitrotetraazaspirooctane) are recommended as the preferred candidates of HEDMs. These results may provide basic information for the molecular design of HEDMs.

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PubMed2006

The structure and thermodynamics of calix[n]arene complexes with dipyridines and phenanthroline in aqueous solution studied by microcalorimetry and NMR spectroscopy.

The complex stability constants (K(S)) and thermodynamic parameters (DeltaH degrees and TDeltaS degrees) for 1:1 intermolecular complexation of three water-soluble calixarenes, that is, p-sulfonato calix[4]arene (C4AS), p-sulfonato thiacalix[4]arene (TCAS), and p-sulfonato calix[5]arene (C5AS), with dipyridines (4-DPD and 2-DPD) and 1,10-phenanthroline (Phen) have been determined by means of titration microcalorimetry in an acidic buffer solution (pH = 2.0) at 298.15 K, and their binding modes have been investigated by (1)H NMR and 2D ROESY NMR spectroscopy. The results obtained indicate that 4-DPD, 2-DPD, and Phen are included in the cavity of C5AS with the different patterns, this is, accumbent for 4-DPD, acclivitous for 2-DPD and Phen, while Phen is included upright in the cavity of C4AS. The K(S) values decrease with increasing cavity size of host molecules but enhance with extending conjugation degree of guest molecules, and thus C4AS exhibits an exceptionally high Phen/4-DPD selectivity of 22.5. Thermodynamically, the complexation of DPDs/Phen with the water-soluble calixarenes is obviously enthalpy-driven, but the molecular selectivity is mainly governed by the entropy term.

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