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PubMed2004

Roughening of the interfaces in (1+1) -dimensional two-component surface growth with an admixture of random deposition.

We simulate competitive two-component growth on a one-dimensional substrate of L sites. One component is a Poisson-type deposition that generates Kardar-Parisi-Zhang (KPZ) correlations. The other is random deposition (RD). We derive the universal scaling function of the interface width for this model and show that the RD admixture acts as a dilatation mechanism to the fundamental time and height scales, but leaves the KPZ correlations intact. This observation is generalized to other growth models. It is shown that the flat-substrate initial condition is responsible for the existence of an early nonscaling phase in the interface evolution. The length of this initial phase is a nonuniversal parameter, but its presence is universal. We introduce a method to measure the length of this initial nonscaling phase. In application to parallel and distributed computations, the important consequence of the derived scaling is the existence of the upper bound for the desynchronization in a conservative update algorithm for parallel discrete-event simulations. It is shown that such algorithms are generally scalable in a ring communication topology.

Journal Article↗
PubMed1978

Changes in the cyclic AMP content during growth and development of Acetabularia.

The 3',5'-adenosine monophosphate (cyclic-AMP) content of the unicellular alga Acetabularia has been examined at various developmental stages. It has been found that very young algae, less than 10mm in length, have a high cAMP content [more than 7 pmoles per 100 mg wet weight (WW)], but that with the growth of the algae, the cAMP content decreases rapidly, reaching the low level of 0.5--1.0 pmoles per 100mg WW. The cAMP content remains at this level until cap differentiation, after which an increase in cAMP content accompanies cap enlargement. It has been shown that these results are unlikely to be affected by changes in the cAMP content induced by variations in circadian rhythm. Treatment with theophylline (2.10(-3) M), a phosphodieterase inhibitor, results in an increase in the cAMP content and delays growth and cap formation. Experiments on the effects of theophylline upon the circadian rhythm of oxygen evolution have shown that the continuous presence of theophylline in the culture medium does not induce a phase shift in the rhythm. The cAMP content of anucleate Acetabularia shows development stage variations parallel to that of the whole algae.

Acetabularia↗
PubMed2001

Thermal processing of sewage sludge by drying, pyrolysis, gasification and combustion.

Thermal processing of sewage sludge including drying, pyrolysis and gasification or combustion may be an alternative to other ways of utilising it. In this paper thermogravimetric analysis (TGA) was employed in the investigation of thermal decomposition of sewage sludge. The kinetic parameters of drying, pyrolysis and gasification or combustion of sewage sludge have been determined in an inert-gas (argon) and additionally some series of the sludge decomposition experiments have been carried out in air, in order to compare pyrolysis and combustion. The pyrolysis char has been gasified with carbon dioxide. A typical approach to the kinetics of thermal decomposition of a solid waste is to divide the volatile evolution into a few fractions (lumps), each of which is represented by a single first-order reaction. If these lumps are assumed to be non-interacting and evolved by independent parallel reactions the first-order kinetic parameters such as activation energy Ei and pre-exponential factor Ai can be determined from mathematical evaluation of TG or DTG curves. The object of our investigations was a municipal sludge from the two wastewater treatment plants (WTP) in Poland. The experiments have been carried out in the thermobalance Mettler-Toledo type TGA/SDTA851 LF, in the temperature range 30-1,000 degrees C. Five different values of heating rate have been applied beta = 2, 5, 10, 15 and 20 K/min. The values of Ei and Ai have been determined for all recognised lumps of gaseous products. The method employed has also revealed its usefulness for the determination of kinetic parameters for municipal sludge, that possess an undefined content. An alternative route to combustion of sewage sludge is its gasification, which significantly increases the gaseous product (pyrolytic gas + syngas). Besides pyrolysis kinetics, gasification or combustion process kinetics have also been determined.

Gases↗
PubMed1979

[Contribution of Hoffmann's reflex, evoked on the soleus muscle, to the study of nerve conduction velocity from birth to age 5].

We tried to appreciate the maturation of the peripheric nervous system, in children from two days to five years old, by electrophysiological technics. Hoffmann's monosynaptic reflex is recorded on the soleus muscle and conduction velocity is calculated on the motor tibial nerve. So, we can follow the conduction velocities on the proximal and distal part of this nerve, from birth to five years of life. The conduction velocities develop in a parallel and approximately exponential way. The proximal conduction velocity remains always faster than the distal one but their difference decreases during the first 18 months of life and then remains constant. The evolution of the proximal conduction velocity explains that the conduction time slightly but significantly decreases during the first year of life in contrast to the increase of the nerve length. So, during the first year of life, nervous system maturation gets on very quickly and anticipates the skeletal growth.

Age Factors↗
PubMed1976

[Changes in the internal temperature and the cardiac rhythm of the Saharian lizard, Varanus griseus Daud., using radiotelemetry].

The evolution of the internal temperature and of the heart rate, recorded by telemetry, has been studied on Varanus griseus, by using transmitters of reduced size, in the natural conditions of Sahara. A parallelism between these two parameters exists. However, an anticipation of the heart rate increase during sun basking has been established. The hearing and cooling dynamics have been specified; a hypothesis on the mechanism of winter dormancy entrance has been proposed.

Animals↗
PubMedDate not supplied

Development and evolution of the mammalian limb: adaptive diversification of nails, hooves, and claws.

Paleontological evidence indicates that the evolutionary diversification of mammals early in the Cenozoic era was characterized by an adaptive radiation of distal limb structures. Likewise, neontological data show that morphological variation in distal limb integumentary appendages (e.g., nails, hooves, and claws) can be observed not only among distantly related mammalian taxa but also among closely related species within the same clade. Comparative analysis of nail, claw, and hoof morphogenesis reveals relatively subtle differences in mesenchymal and epithelial patterning underlying these adult differences in distal limb appendage morphology. Furthermore, studies of regulatory gene expression during vertebrate claw development demonstrate that many of the signaling molecules involved in patterning ectodermal derivatives such as teeth, hair, and feathers are also involved in organizing mammalian distal limb appendages. For example, Bmp4 signaling plays an important role during the recruitment of mesenchymal cells into the condensations forming the terminal phalanges, whereas Msx2 affects the length of nails and claws by suppressing proliferation of germinal epidermal cells. Evolutionary changes in the form of distal integumentary appendages may therefore result from changes in gene expression during formation of mesenchymal condensations (Bmp4, posterior Hox genes), induction of the claw fold and germinal matrix (shh), and/or proliferation of epidermal cells in the claw matrix (Msx1, Msx2). The prevalence of convergences and parallelisms in nail and claw structure among mammals underscores the existence of multiple morphogenetic pathways for evolutionary change in distal limb appendages.

Animals↗
PubMed1993

The evolution and development of the urinary catheter.

The urinary catheter is one of the most frequently used medical devices and has a long and intriguing history of development. This paper describes the catheter from its simple beginnings through the subtle but important changes it has undergone paralleling the advances in plastics technology witnessed this century. The changes have not been without controversy and the recent association of catheters with tissue toxicity, which has forced the implementation of strict guidelines for their manufacture and use, is described.

Catheters, Indwelling↗
PubMed1980

On dinoflagellate evolution.

A broad overview of the diversity of living dinoflagellates is presented in a hypothetical evolutionary context. Ultrastructural, and some physiological information is included. Five principal organizational types: prorocentroid, dinophysoid, gonyaulacoid, peridinioid and gymnodinoid, are taken to represent lineages, and the developments within each summarized. Thecal evolution is discussed party with the aid of a model developed to determine probable plate homologies in the gonyaulacoids and peridinioids. Both primitive and highly specialized features are drawn attention to, particularly with regard to the nucleus and ocelli. The parallelism between the latter and metazoan eyes is extraordinary, considering that the dinoflagellate organelles are made of subcellular components. The roles of various types of cysts within the lifecycle of dinoflagellates are discussed. The compatibility of the hypothetical events proposed here with the fossil record is briefly considered, and some indications of the phyletic position of dinoflagellates are reviewed. The conclusions summarize the principal developments that appear to have arisen within the group. The relative primitiveness of the desmokonts is affirmed. A new combination, Plectodinium miniatum (Kofoid and Swezy) comb. nov. is proposed, as well as the recognition of a new order, the Gonyaulacales ord. nov.

Animals↗
PubMed1996

Evolution of floral scent in Clarkia: novel patterns of S-linalool synthase gene expression in the C. breweri flower.

Flowers of Clarkia breweri, an annual plant from the coastal range of California, emit a strong sweet scent of which S-linalool, an acyclic monoterpene, is a major component. Chromosomal, chemical, and morphological data, and the species' geographic distribution, suggest that C. breweri evolved from an extant nonscented species, C. concinna. A cDNA of Lis, the gene encoding S-linalool synthase, was isolated from C. breweri. We show that in C. breweri, Lis is highly expressed in cells of the transmitting tract of the stigma and style and in the epidermal cells of petals, as well as in stamens, whereas in the nonscented C. concinna, Lis is expressed only in the stigma and at a relatively low level. In both species, changes in protein levels parallel changes in mRNA levels, and changes in enzyme activity levels parallel changes in protein levels. The results indicate that in C. breweri, the expression of Lis has been upregulated and its range enlarged to include cells not expressing this gene in C. concinna. These results show how scent can evolve in a relatively simple way without the evolution of highly specialized "scent glands" and other specialized structures. Lis encodes a protein that is structurally related to the family of proteins termed terpene synthases. The protein encoded by Lis is the first member of this family found to catalyze the formation of an acyclic monoterpene.

Acyclic Monoterpenes↗
PubMed2003

A reassessment of living hominoid postcranial variability: implications for ape evolution.

In an analysis of hominoid postcranial variation, 'Evol. Anthrop. 6 (1998) 87' argued that many purportedly unique features of the hominoid postcranium are actually much more variable than previously reported and in many instances overlap with both suspensory (Ateles) and non-suspensory primates. Based on these results, it was concluded that parallelism in the living ape postcranium was a plausible and even likely possibility given the Miocene hominoid postcranial record. However, this analysis did not distinguish whether within-hominoid variability or overlap with non-hominoids involved one or all ape taxa, a distinction which has potentially important effects on the interpretation of results. To address this issue, primate postcranial morphometric data from the trunk and forelimb were reanalyzed using three techniques: cladistic analysis, principle components analysis, and cluster analysis. Results reveal that these postcranial characters distinguish not only suspensory and quadrupedal primates but also discriminate hominoids and Ateles from all other taxa, great apes from lesser apes and Ateles, cercopithecines from colobines, and cercopithecoids from platyrrhines. The majority of hominoid variability and overlap with Ateles occurs with Hylobates humeral head and shoulder joint characters related to brachiation. This suggests that Hylobates' specializations may skew analyses of hominoid postcranial uniqueness and variability, and that great apes are relatively similar in their postcranium.

Anatomy, Comparative↗
PubMed1998

Avian IFN-gamma genes: sequence analysis suggests probable cross-species reactivity among galliforms.

Little is known about the evolution of cytokines in non-mammalian systems. To address this problem, we attempted to clone the gene for interferon-gamma (IFN-gamma) from a variety of avian species using oligonucleotide primers based on the sequence of the chicken IFN-gamma gene. The coding sequence and partial intron sequences were determined for four species, namely guinea fowl, ring-necked pheasant, Japanese quail, and turkey. To obtain sequence information on the gene extremities, a modified 5' and 3' RACE protocol was used. The sequence information showed that the coding regions of the IFN-gamma gene are highly conserved among the species studied (93.5%-96.7% and 87.8%-97.6% at the nucleotide and peptide levels, respectively) and are more conserved at the amino-terminal region (exons 1 and 2) than the carboxyl-terminal (exons 3 and 4). This high degree of overall identity at the predicted primary amino acid sequence level of the protein, including the deduced IFN-gamma receptor binding motifs, suggests that IFN-gamma may be cross-reactive among these species. Phylogenetic analysis shows that the similarity of the avian IFN-gamma sequences parallels the presumed evolutionary relationships between the species.

Amino Acid Sequence↗
PubMed1988

Somatic immunoglobulin sequence divergence and its implications for studies of evolutionary divergence.

The divergence of immunoglobulin genes due to somatic mutation provides a natural example of DNA sequence divergence. This divergence was examined to gain insight into the processes of evolution and the determinants of the variance-to-mean ratio of sequence divergence. Normally, this ratio is found to be larger than expected (1.0 under Poisson assumptions) for the evolutionary divergence or most genes. Although not significantly less than one, all seven groups of immunoglobulin amino acid sequences have ratios smaller than expected, contrary to the evolutionary pattern generally observed. The substitutions in the immunoglobulin genes appear to be highly nonrandom and an excess of parallel changes (the major nonrandom feature of these mutations) is shown to cause smaller ratios. Because convergent or parallel mutations are often observed in the evolutionary divergence of genes, this suggests that forces causing the large observed ratios may actually have to be more powerful than previously expected. Further, since selection is one of the likely causes of parallel mutations, it should be noted that selection could significantly decrease the variance-to-mean ratio. The high frequency of parallel mutations and their resulting effects, as observed in the immunoglobulin genes, suggest that only poor inferences of sequence divergence can be made without actual knowledge of the ancestral sequence.

Amino Acid Sequence↗
PubMed2006

Nonsense-mediated mRNA decay: Target genes and functional diversification of effectors.

Recent genome-wide identification of nonsense-mediated mRNA decay (NMD) targets in yeast, fruitfly and human cells has provided insight into the biological functions and evolution of this mRNA quality control mechanism, revealing that NMD post-transcriptionally regulates an important fraction of the transcriptome. NMD targets are associated with a broad range of biological processes, but most of these targets are not encoded by orthologous genes across different species. Yeast and fruitfly NMD effectors regulate common targets in concert, but parallel pathways have evolved in humans, whereby NMD effectors have acquired additional functions. Thus, the phenotypic differences observed across species after inhibition of NMD are driven not only by the functional diversification of NMD effectors but also by changes in the repertoire of regulated genes.

Animals↗
PubMed2005

Phenogenetic drift in evolution: the changing genetic basis of vertebrate teeth.

Vertebrate mineralized tissues are vital to the adaptive evolution of various traits. Among these traits is the tooth, which consists of two characteristic mineralized tissues, a highly mineralized surface layer (enamel in tetrapods and enameloid in fish) and a softer body (dentin), both supported by basal bone. However, enamel and enameloid are significantly different in development, and dentin shows many histological variations; hence their evolution has been intensively studied. Nevertheless, their genetic basis has been revealed only in tetrapods. We previously reported that many genes involved in tetrapod tissue mineralization arose from a common ancestor and constitute the secretory calcium-binding phosphoprotein (SCPP) gene family. Now we show that teleost fish also use many SCPPs for enameloid and dentin mineralization, but none of these directly corresponds to tetrapod SCPPs. This finding suggests that teleost and tetrapod SCPP genes have experienced independent parallel duplication histories. Thus, through phenogenetic drift, the tooth has remained a stable trait in jawed vertebrates, while evolving distinct genetic bases in teleosts and tetrapods. The characteristics of teleost SCPP genes and their expression domains in tooth development suggest the possibility that enameloid arose from dentin and enamel from enameloid more than once in vertebrate evolution. In fugu (puffer fish), expression of SCPP genes is also detected in an unusual beak-like structure that shelters numerous teeth. Their expression pattern suggests that the jaw consists of the dentin beak and supportive bone. These findings illustrate the complexity of the homology concept in understanding evolution, particularly the evolution of mineralized tissues.

Animals↗
PubMed2005

Architecture and evolution of dinoflagellate chromosomes: an enigmatic origin.

Dinoflagellates are a highly diversified group of unicellular protists that present fascinating nuclear features which have intrigued researchers for many years. As examples, a dense nuclear matrix accommodates permanently condensed chromosomes that are composed of fibers organized without histones and nucleosomes in stacked rows of parallel nested arches. The macromolecular chromosome structure corresponds to cholesteric liquid crystals with a constant left-handed twist. RNA acts to maintain the chromosome structure. Whole mounted chromosomes have a left-handed screw-like configuration with coils which progressively increase their pitch. This helical arrangement seems to be the result of a couple of narrow strands coiling together. Chromosomes do not show Q, G and C banding patterns. However, a roughly spherical differentiated upper end (primitive kinetochore?) and two differentiated coiling regions, the upper one composed of two to three coils where a couple of sister strands run together and parallel to each other, and the lower one where sister strands run out of phase by 180 degrees angular difference along the immediate next turns, can be distinguished. The chromosome segregation into two daughter chromatids begins at the telomere that attaches to the nuclear envelope, follows along the chromosome axis constituting first a Y-shaped and afterwards a V-shaped chromosome, which packs the newly synthesized DNA inside the "old" chromosome. Dividing chromosomes remain highly condensed, and the diameters of the new chromatids and the undivided chromosome are similar, but the number of arches is twice as large in G1 as in G2. The nuclear envelope remains through the cell cycle and shows spindle fibers, which penetrate intranuclear cytoplasmic channels during mitosis constituting an extra nuclear spindle. These and other cytogenetic features suggest that dinoflagellates are a group of enigmatic protists, unique and different from the usual eukaryotes. In contrast, DNA sequence studies propose that dinoflagellates are true eukaryotes, closely related to Apicomplexa, and ciliates (Alveolata), suggesting that the unusual features of chromosome and nuclear organization are not primitive but derived characters. Nevertheless, dinoflagellates have reached enigmatic specific nuclear and chromosome solutions, extremely far from those of other living beings.

Animals↗
PubMed2002

Breeding together: kin selection and mutualism in cooperative vertebrates.

In cooperatively breeding vertebrates, nonbreeding helpers raise young produced by dominant breeders. Although the evolution of cooperative breeding has often been attributed primarily to kin selection (whereby individuals gain "indirect" benefits to their fitness by assisting collateral relatives), there is increasing evidence that helpers can be unrelated to the young they are raising. Recent studies also suggest that the indirect benefits of cooperative behavior may often have been overestimated while the direct benefits of helping to the helper's own fitness have probably been underestimated. It now seems likely that the evolutionary mechanisms maintaining cooperative breeding are diverse and that, in some species, the direct benefits of helping may be sufficient to maintain cooperative societies. The benefits of cooperation in vertebrate societies may consequently show parallels with those in human societies, where cooperation between unrelated individuals is frequent and social institutions are often maintained by generalized reciprocity.

Altruism↗
PubMed2006

Microbial diversity in the deep sea and the underexplored "rare biosphere".

The evolution of marine microbes over billions of years predicts that the composition of microbial communities should be much greater than the published estimates of a few thousand distinct kinds of microbes per liter of seawater. By adopting a massively parallel tag sequencing strategy, we show that bacterial communities of deep water masses of the North Atlantic and diffuse flow hydrothermal vents are one to two orders of magnitude more complex than previously reported for any microbial environment. A relatively small number of different populations dominate all samples, but thousands of low-abundance populations account for most of the observed phylogenetic diversity. This "rare biosphere" is very ancient and may represent a nearly inexhaustible source of genomic innovation. Members of the rare biosphere are highly divergent from each other and, at different times in earth's history, may have had a profound impact on shaping planetary processes.

Biodiversity↗
PubMed1995

Multiterminal proprioceptors in Squilla mantis (Stomatopoda, Crustacea).

A series of morphologically simple multiterminal proprioceptors is described in the thoracopods of the hoplocaridian crustacean, Squilla mantis, which is a primitive offshoot of the main malacostracan evolutionary line. The description given here is primarily for the largest and most complex receptor that occurs in the second thoracopod, the raptorial limb. These stretch receptors, which lie distally in the coxopodite, consist of single multiterminal sensory neurons with widely branching dendrites innervating broad connective tissue strands. The single primary dendrite divides dichotomously or, occasionally, trichotomously to produce a large number of terminal dendrites. The terminal dendrites, which exhibit a beaded structure, run parallel to the connective tissue strands' longitudinal axis. Dendrites possess an elaborate connective tissue sheath consisting of a single inner glial layer and a multiple outer connective tissue layer. The presence of the beaded structure has been confirmed by transmission electron microscopy (EM), and, because microtubule density does not vary with dendrite diameter, the beads are not fixation artifacts. Beads have high numbers of mitochondria and glycogen deposits, which suggests that they have a high metabolic activity. Dendritic tips are not associated with beads, arise from the terminals of smaller dendrites, and are embedded in the extracellular ground matrix of the connective tissue strand, where they lie parallel to and surround bundles of elastic fibrils. The different degree of development within the receptor series allows comparison between functionally different limbs, and comparison is made with other segmental receptor series. The evolution of multiterminal proprioceptors is discussed.

Animals↗