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PubMed2006

Fungi and actinomycetes associated with Meloidogyne spp. eggs and females in China and their biocontrol potential.

A survey was conducted to determine the microflora on eggs and females of Meloidogyne spp. collected from plant roots and infested soil in China. A total of 455 fungal isolates belonging to 24 genera and 52 isolates of actinomycetes were obtained from 28 samples from greenhouses and fields in Hainan, Yunnan, Fujian, Hebei, Shandong, and Beijing. The predominant fungal species were Paecilomyces lilacinus (49.3% of the isolates), Fusarium spp. (7.9%), Pochonia chlamydosporia (6.9%), Penicillium spp. (5.7%), Aspergillus spp. (3.2%), and Acremonium spp. (2.8%). Actinomycetes were frequently encountered (10.3%) as well. A total of 350 isolates of nematophagous fungi and actinomycetes were evaluated for their parasitism of eggs and effects on egg hatch and juvenile mortality in vitro. Pathogenicity varied among isolates, and 29.1% of isolates parasitized over 90% eggs 4 days after inoculation. Results also show that seven isolates of fungi and actinomycetes reduced egg hatch rates to less than 10% contrasted to the control of 65.8%, and three isolates killed all hatched juveniles after 7 days. Seventeen fungal isolates and four actinomycete isolates with high pathogenicity in vitro were selected to test biocontrol efficacy in the greenhouse. They reduced tomato root gall index by 13.4-58.9% compared to the no treatment control.

Actinobacteria↗
PubMed2004

Building filaments in the air: aerial morphogenesis in bacteria and fungi.

To disperse their spores to new sites, filamentous fungi and bacteria need to erect aerial filaments, which develop into fruiting bodies and spore-bearing structures. The first challenge to aerial development is breaking surface tension at an aqueous-air interface, and in both groups of microorganisms, surface-active proteins take part in the initiation of aerial morphogenesis. Comparative analysis of fungi and bacteria is providing new insights into the means by which aerial filamentation is accomplished.

Air Microbiology↗
PubMed2006

Lipid signaling in pathogenic fungi.

Recent studies have highlighted the importance of lipid signaling molecules in the development and pathogenicity of clinically important fungi. In Cryptococcus neoformans, sphingolipid-derived diacylglycerol has been shown to induce the transcription of the putative virulence factor App1, which inhibits the phagocytosis of fungal cells by alveolar macrophages, as well as to activate the protein kinase C Pkc1, which promotes cell-wall stability and increased melanin production. In Candida albicans, exposure to the oxylipin farnesol causes the regulation of specific genes involved in hyphal development, drug resistance and iron acquisition. Farnesol increases resistance to oxidative stress in C. albicans but, interestingly, induces apoptotic-like cell death in Aspergillus nidulans, suggesting that this molecule has multiple and opposing functions. Finally, fungal cells secrete eicosanoids, which are lipid molecules with putative signaling functions in fungi, and the recent characterization of the first fungal enzymes associated with the production of eicosanoids in A. nidulans and Aspergillus fumigatus provides new insights into the understanding of the role of eicosanoid production in the biology of fungal pathogenesis.

Animals↗
PubMed2006

Non-self recognition and programmed cell death in filamentous fungi.

Non-self recognition resulting in programmed cell death is a ubiquitous phenomenon in filamentous ascomycete fungi and is termed heterokaryon incompatibility (HI). Recent analyses show that genes containing predicted HET domains are often involved in HI; however, the function of the HET domain is unknown. Autophagy is induced as a consequence of HI, whereas the presence of a predicted transcription factor, VIB-1, is required for HI. Morphological features associated with apoptosis in filamentous fungi are induced by various stresses and drugs, and also during HI. Future analyses will reveal whether common or different genetic mechanisms trigger death by non-self recognition and death by various environmental onslaughts.

Apoptosis↗
PubMed2006

Seeing the rainbow: light sensing in fungi.

Light is essential for photosynthetic organisms, but also serves as an important environmental cue for non-photosynthetic species; thus, light sensing is evolutionarily conserved throughout the kingdoms, from archaea and fungi to humans. Light sensors are chromoproteins, the low-molecular weight compound of which absorbs specific wavelengths and induces a reaction from the protein. In fungi, three light-sensing systems have been described at the molecular level. Blue-light sensing is achieved by a flavin-based photoreceptor, which itself acts as a transcription factor, and red-light sensing is achieved by a phytochrome, a molecule until recently thought to be confined to plants. A retinal-based opsin-system was discovered recently, although a biological function remains to be determined. The challenge for future research will be the identification of further components of signalling cascades, the identification of light-regulated genes and the unravelling of possible functional interplays between the different light control systems.

Fungi↗
PubMed2006

Chromosome visualisation in filamentous fungi.

Many attempts have been made to study the chromosomes of fungi, but a major problem is that fungal nuclei are so small. Fungal chromosomes are at the lowest resolution of light microscopy; thus few attempts to visualise fungal chromosomes have been successful. Fungi examined have been mainly Ascomycotina. The number of chromosomes per nucleus, estimated by conventional light visualisation and stained with standard dyes like Giemsa or aceto-orceine, usually does not exceed ten. A method developed in the late 1980s called 'germ tube burst' enables the discharge of condensed chromosomes from the hyphal cell and their spread on the surface of a slide. This more accurate method, usually gives better resolution of chromosomes. It was used with conventional light microscopy dyes as well as in fluorescent microscopy or for in situ hybridisation. A breakthrough has been made in fungal genetics by using pulse field gel electrophoresis (PFGE). Separation of the chromosomes on the gel enables the determination of their number and estimation of genome size. It also reveals chromosome length polymorphism and the presence of supernumerary chromosomes, which are usually too small to visualise in nuclei. A combination of two methods, cytological analysis by light microscopy and PFGE, should give a tool allowing the complex analysis of fungal genomes.

Chromosomes, Fungal↗
PubMed2005

Influence of small scale conditions on the diversity of wood decay fungi in a temperate, mixed deciduous forest canopy.

Studies on fungal richness and ecology have been largely disregarded since the first intensive efforts to investigate organismal diversity in forest canopies. We used the Leipzig Canopy Crane research facility to sample wood-decaying fungi in a mixed deciduous forest canopy 10-30 m in height. The structural complexity of the canopy was analysed using different methods, including meteorological measurements. With respect to temperature and relative humidity, marked differences existed between forest floor and upper canopy layers that persisted on smaller scales. Of the 118 taxa found in 128 sample units, pyrenomycetes and corticioid fungi outnumbered other macrofungal groups. Fungal communities showed distinct variations both in species richness and composition with respect to substrate (tree species), height in the canopy, stage of decay, and branch diameter. Pyrenomycetes and their anamorphs dominated the mycobiota on thin, exposed twigs at great heights, indicating their ability to overcome extended periods of drought and high levels of solar irradiance. Other taxa of Tremellales (Exidia spp.), Orbiliales (Hyalorbilia inflatula, Orbilia spp.) or Agaricales (Episphaeria fraxinicola, Cyphellopsis anomala, Lachnella spp.) also exhibited features that enabled them to develop in lesser protected habitats within tree crowns.

Cluster Analysis↗
PubMed2006

Secondary metabolite toxins and nutrition of plant pathogenic fungi.

Fungal pathogens derive nutrition from the plants they invade. Some fungi can subvert plant defence responses such as programmed cell death to provide nutrition for their growth and colonisation. Secondary metabolite toxins produced by fungi often play a role in triggering these responses. Knowledge of the biosynthesis of these toxins, and the availability of fungal genome sequences and gene disruption techniques, allows the development of tools for experiments aimed at discovering the role of such toxins in triggering plant cell death and plant disease.

Fungi↗
PubMed2004

3-hydroxypropionic acid as a nematicidal principle in endophytic fungi.

3- Hydroxypropionic acid was isolated by bioactivity-guided fractionation of extracts obtained from submerged cultures of several endophytic fungi isolated from above-ground plant organs. This compound showed selective nematicidal activity against the plant-parasitic nematode Meloidogyne incognita with LD50 values of 12.5-15 microg/ml. Activity against the saprophytic Caenorhabditis elegans was fivefold lower. No antimicrobial, cytotoxic or phytotoxic effects were observed. Propionic acid and D- and L-lactic acids were not active against either nematode species. Based on morphological features and ITS, 18S and 28S rDNA analyses, the producing strains were identified as Phomopsis phaseoli isolated from the leaf of a tropical tree, and four strains of Melanconium betulinum isolated from twigs of Betula pendula and B. pubescens in Germany. This is the first report of 3-hydroxypropionic acid in fungi, and of the nematicidal activity of this metabolite.

Animals↗
PubMed2005

Metabolism and detoxification of phytoalexins and analogs by phytopathogenic fungi.

To date, the many examples reporting that fungal pathogens can efficiently detoxify phytoalexins provide strong evidence that the pathogenicity and/or virulence of some fungi is linked to their ability to detoxify their hosts' phytoalexins. The pathways used by plant pathogenic fungi to metabolize and detoxify phytoalexins are reviewed. Prospects for application of recent findings are discussed.

Brassicaceae↗
PubMed2005

Heterologous protein expression in filamentous fungi.

Filamentous fungi are commonly used in the fermentation industry for the large-scale production of proteins--mainly industrial enzymes. Recent advances in fungal genomics and related experimental technologies such as gene arrays and proteomics are rapidly changing the approaches to the development and use of filamentous fungi as hosts for the production of both homologous and heterologous gene products. The emphasis is moving towards sourcing new genes of interest through database mining and unravelling the circuits related to fungal gene regulation, applying, for example, transcriptomics. However, although heterologous fungal proteins are efficiently expressed, expression of gene products from other organisms is subject to several bottlenecks that reduce yield. Current approaches emphasize the study of pathways involved in protein modification and degradation in general rather than gene-by-gene approaches.

Animals↗
PubMed2006

Manganese superoxide dismutase based phylogeny of pathogenic fungi.

Superoxide dismutases (SODs), which provide protection against oxidative stress, exhibit an essential role for fungal cell survival, especially during host invasion. Here, 20 partial SOD sequences from 19 pathogenic fungi were determined and aligned with 43 homologous fungal sequences from databases. All sequences encoded tetrameric manganese (Mn)-containing SODs showing predicted cytosolic or mitochondrial subcellular localization. Numerous fungi possessed both cytosolic and mitochondrial MnSODs in addition to the mainly cytosolic copper/zinc isozyme. Moreover, MnSOD sequence variability was higher than SSU rRNA and similar to ITS rRNA, suggesting MnSOD could be used to identify closely related fungal species. MnSOD- and SSU rRNA-based phylogenetic trees were constructed and compared. Despite a more complex topology of the MnSOD tree, due to several gene duplication events, all the classic fungal classes and orders were recovered. A salient point was the existence of two paralogous cytosolic and mitochondrial MnSODs in some Ascomycota. A hypothetical evolutionary scenario with an early gene duplication of the "mitochondrial" gene is proposed.

Ascomycota↗
PubMed1995

Targeting fungi: a challenge.

Invasive fungal infections are more commonly identified in various categories of patients, mainly in cancer patients but also in those undergoing organ transplantation, patients in intensive care units, and those with AIDS. There is a great need to increase the awareness of practitioners who are still underestimating the morbidity and mortality relating to invasive fungal infections, and to stress the economic burden for the society and healthcare systems of invasive fungal infections. The list of fungal pathogens causing life-threatening complications has also increased recently, with the emergence of unusual fungi being more frequently identified in such settings. Early diagnosis of invasive fungal infections is still a major challenge for the clinician at the bedside. Identification of state-of-the-art management is also a difficult task for the clinical scientist involved in the assessment of optimal strategies to prevent and to treat those invasive fungal infections, although major progress has occurred in the last 5 years with the development of new, safe, and effective antifungal agents. Empiric therapy remains a very controversial issue that should be further investigated in high-quality clinical trials. Overall, clinical research in this difficult field requires independent and objective analysis; only large multicenter clinical trials can address these critical issues and rapidly provide convincing results leading to a better prognosis of patients with invasive fungal infections. These complications still represent too often an obstacle to successful control of severe underlying diseases. Clinical research on the appropriate ways to target fungi will not only define state-of-the-art management but also identify ineffective or redundant treatments. Such an approach will make a substantial contribution to the care of the high-risk patients within the next decade and will preserve our capacity for medical excellence.

AIDS-Related Opportunistic Infections↗
PubMed2002

A new class of tetraspanins in fungi.

Tetraspanins are animal proteins involved in membrane complexes that are involved in cell adhesion, differentiation, and motility. The PLS1 gene from rice blast fungus Magnaporthe grisea encodes a protein (Pls1p) structurally related to tetraspanins that is required for pathogenicity. In Botrytis cinerea public sequences, we identified an EST homologous to PLS1. Using degenerated oligonucleotides, we amplified sequences homologous to PLS1 in fungi Colletotrichum lindemuthianum and Neurospora crassa. Analysis of N. crassa and M. grisea genome sequences revealed the presence of a single tetraspanin gene. Thus, fungi differ from animals, which contain between 20 and 37 paralogous tetraspanin genes. Fungal proteins encoded by BcPLS1, ClPLS1, and NcPLS1 display all the structural hallmarks of tetraspanins (predicted topology with four transmembrane domains, extra- and intracellular loops; conserved cysteine-based patterns in second extracellular loop). Phylogenetic analysis suggests that these genes define a new family of orthologous genes encoding fungal-specific tetraspanins.

Amino Acid Sequence↗
PubMed2001

Concurrent production of chitin from shrimp shells and fungi.

Crustacean shells constitute the traditional and current commercial source of chitin. Conversely, the control of fungal fermentation processes to produce quality chitin makes fungal mycelia an attractive alternative source. Therefore, the exploitation of both of these sources to produce chitin in a concurrent process should be advantageous and is reported here. Three proteolytic Aspergillus niger (strains 0576, 0307 and 0474) were selected from a screening for protease activity from among 34 zygomycete and deuteromycete strains. When fungi and shrimp shell powder were combined in a single reactor, the release of protease by the fungi facilitated the deproteinization of shrimp-shell powder and the release of hydrolyzed proteins. The hydrolyzed proteins in turn were utilized as a nitrogen source for fungal growth, leading to a lowering of the pH of the fermentation medium, thereby further enhancing the demineralization of the shrimp-shell powder. The shrimp-shell powders and fungal mycelia were separated after fermentation and extracted for chitin with 5% LiCl/DMAc solvent. Chitin isolates from the shells were found to have a protein content of less than 5%, while chitin isolates from the three fungal mycelia strains had protein content in the range of 10-15%. The relative molecular weights as estimated by GPC for all chitin samples were in the 10(5) dalton range. All samples displayed characteristic profiles for chitin in their FTIR and solid-state NMR spectra. All chitin samples evaluated with MTT and Neutral Red assays with three commercial cell lines did not display cytotoxic effects.

Animals↗
PubMed1977

Effect of three nematicides on the growth of some phytopathogenic bacteria and fungi.

The effect of three nematicides, aldicarb, fensulfothion, and phenamiphos at four concentrations (1, 5, 25, and 125 ppm) was tested on the growth of five bacteria, Agrobacterium tumefaciens, Corynebacterium fascians, Erwinia carotovora, Pseudomonas solanacearum, and Streptomyces scabies and four fungi, Fusarium oxysporum f. sp. vasinfectum, Fusarium solani, Rhizoctonia solani, and Sclerotium bataticola. Of the bacteria, P. solanacearum was most affected by the chemicals at all concentrations, while E. carotovora was least affected. Fensulfothion was generally the most effective nematicide on the bacteria tested, while phenamiphos was the least effective. Similarly, the effect of the chemicals on the fungi tested varied greatly. F. solani and R. solani were generally most affected, followed by F. oxysporum, while S. bataticola was least affected. Of the chemicals tested, phenamiphos was generally the most effective, followed by fensulfothion, while aldicarb was the least effective.

Aldicarb↗
PubMed1999

Biodegradation of fluoranthene by soil fungi.

A selection of 39 strains of micromycetes known as good degraders of polychlorinated aromatic compounds, mostly isolated from soil and belonging to various taxonomic groups, have been investigated for fluoranthene degradation. Toxicity assays, first evaluated on solid medium MEA, have not shown any toxicity of fluoranthene (1-100 mg.L-1) towards fungi. Whereas, consumption assays on a solid synthetic medium showed a toxicity at 100 mg.L-1. The degradation of fluoranthene (10 mg.L-1) was then investigated in a liquid synthetic medium for 4 days and evaluated by HPLC. Among the 39 strains tested, 18 degraded fluoranthene at 60% or more. Zygomycetes appeared to be the most efficient group (mean degradation: 90%). Among 18 performant strains, 10 had not yet been reported in the literature: Sporormiella australis, Cryptococcus albidus, Cicinobolus cesatii, Pestalotia palmarum, beauveria alba, Aspergillus terreus. Cunninghamella blakesleeana, C. echinulata, Mortierella ramanniana and Rhizopus arrhizus. Fluoranthene adsorption on fungi was very low for the strains which degraded well fluoranthene (mean adsorption: 4%). Whereas, some strains adsorbed it much more such as Colletotrichum dematium (47%) and Penicillium italicum (43%).

Adsorption↗
PubMed1999

Effects of culture parameters on the degradation of 2,4-dichlorophenoxyacetic acid (2,4-D) and 2,4-dichlorophenol (2,4-DCP) by selected fungi. Groupe pour l'Etude du Devenir des Xénobiotiques dans l'Environnement (GEDEXE).

In order to enhance 2,4-D and 2,4-DCP degradation by four selected fungi (Cunninghamella elegans, C. echinulata, Rhizoctonia solani and Verticillium lecanii), three culture parameters (initial chemical concentration, amounts of glucose and nitrogen) were varied. The levels of both xenobiotics in the culture media were monitored by HPLC analysis after five days of cultivation. The best results were obtained at low initial concentration (20 mg.L-1 vs 100) and with low amounts of glucose (5 g.L-1 vs 10) and nitrogen (2.4 mM vs 24). When these two elements were lacking from the culture media, biodegradation was not suppressed, but took place to a lesser extent. Thus, initial chemical concentration and amounts of carbon and nitrogen, in the culture medium, were shown to strongly influence the extent of 2,4-D and 2,4-DCP removal by fungi.

2,4-Dichlorophenoxyacetic Acid↗