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PubMed2001

The role of spatial frequency in color induction.

Color induction was measured for test and inducing chromaticities presented in spatial square-wave alternation, with spatial frequencies of 0.7, 4.0, 6.0 and 9.0 cpd. Observers matched the test chromaticities to a rectangular matching field using haploscopic presentation. Data were collected and analyzed within the framework of a cone chromaticity space, allowing analysis of spatial frequency effects on post-receptoral spectral opponent pathways. Assimilation, a shift of chromaticity toward the inducing chromaticity, was found at the highest spatial frequency (9.0 cpd). Contrast, a shift of chromaticity away from the inducing chromaticity, occurred at the lowest spatial frequency (0.7 cpd). The spatial frequency at the transition point from assimilation to contrast was near 4 cpd, independent of the cone axis. Assimilation was unaffected by the presence of a neutral surround and could be described by a spread light model. Contrast was reduced in the presence of a neutral surround. The data suggested that retinal contrast signals are important determinants in the perception of chromatic contrast.

Adult↗

PubMed1972

Receptive field organization of 'sustained' and 'transient' retinal ganglion cells which subserve different function roles.

1. Post-stimulus histograms were obtained from ;sustained' and ;transient' retinal ganglion cells for receptive field plots using a light spot with square-wave modulation of intensity, and of variable intensity and area. Fundamental differences in their receptive field organization in time and space were revealed.2. In ;sustained' cells, excitation consists of ;transient' and ;sustained' components and the ratio of transient/sustained components remains constant at a given retinal locus for a wide range of intensities. The transient component becomes proportionally larger towards the periphery of the receptive field. This rule is also applicable for the inhibitory and disinhibitory surround. In ;transient' cells, however, there is no true ;sustained' component, but some cells produce a double peaked transient post-stimulus histogram at the R.F. centre when high flux stimuli are used, while others show a single peak transient response. The magnitude and shape of transient responses changes with intensity as well as with location in the receptive field.3. The sensitivity gradients of ;sustained' and ;transient' cells show consistent differences in shape. The mean slope of the sensitivity gradients of a sample of ;sustained' cells was 10 times that of a sample of ;transient' cells. The sensitivity gradient of ;sustained' cells shows a distinct surround region where the inhibitory mechanism is more sensitive, while that of ;transient' cells usually does not, owing to an extensive ;tail' on the sensitivity gradient of the centre mechanism, which overlaps the surround.4. Ricco's Law also holds for the centre mechanism of ;transient' cells. Non-linear summation occurs at supra-threshold levels, and when the surround mechanisms are involved.5. Supra-optimal stimuli give a saturation of the response in both ;transient and ;sustained' cells. This saturation is associated with a decrease of latency in ;transient' cells, but not in ;sustained' cells.6. The latency of retinal ganglion cells is determined by both stimulus and background flux. The effect of the background is negligible except at low values of stimulus flux, where its effect may be analysed primarily in terms of its effect on the incremental threshold.7. The latency to stimulation with a standard small spot (25-27') at the receptive field centre is shorter for ;sustained' cells than for ;transient' cells; this latency difference being related to the greater sensitivity of the ;sustained' cells to stimuli of this size. Differences in conduction time along ;transient' and ;sustained' pathways to the lateral geniculate nucleus (LGN) and cortex were estimated, and it is concluded that despite the latency difference noted above, a response to a stimulus which is optimal for a ;transient' cell reaches the cortex faster than the response to a stimulus which is optimal for a ;sustained' cell.8. The above results together with previous evidence available suggest that for most stimuli, centre and surround mechanisms are activated simultaneously and algebraically summed by a single linear stage in ;sustained' cells. In ;transient' cells, although the centre excitation and surround inhibition pools are also spatially co-extensive, they summate and interact in time and space with a greater complexity.9. Differences in the receptive field organization of ;sustained' and ;transient' cells may reflect their different functional roles in vision: (1) analysis of spatial contrast and form recognition (;sustained' cells), and (2) fast detection of objects entering visual space to cause orientation responses (;transient' cells).

Animals↗

PubMed2025

COL5A1 in the tumor microenvironment predicts the prognosis of head and neck cancer.

ObjectivesThis study aims to investigate the significance of tumor microenvironment (TME)-related genes and signal transduction pathways in head and neck cancer (HNC).MethodsGene expression and clinical data of HNC patients were obtained from the Cancer Genome Atlas (TCGA) database. Differentially expressed genes (DEGs) were screened through a multi-step filtration approach to obtain candidate predictors. The biological role of COL5A1 in HNC was verified through rigorous bioinformatic analysis, experimental validation using quantitative real-time PCR (qRT-PCR), immunohistochemical (IHC) analysis from HNC samples, and IHC data from the Human Protein Atlas (HPA) database.ResultsCOL5A1 was significantly upregulated in HNC tissues and cell lines. High COL5A1 expression was significantly associated with advanced tumor grade (P < .05) and shorter survival (TCGA: P < .001; GSE42743: P = .004). COL5A1 was an independent prognostic indicator (univariate analysis: HR = 1.324, P = .001; Multivariate analysis: HR = 1.326, P = .005). It was enriched in pathways related to tumor invasion and immune responses, and its expression was associated with decreased levels of CD8+ T cells and increased levels of macrophages and neutrophils. Spatial distribution analysis revealed higher expression at the tumor's leading edge (vs. tumor core: P < .001). COL5A1 expression is associated with tumor stage, with more pronounced expression in advanced-stage tumors.ConclusionCOL5A1 represented a novel potential prognostic indicator and therapeutic target in an HNC database sample, as its expression is closely linked to tumor progression, immune cell infiltration, and adverse clinical outcomes. These findings, primarily derived from squamous cell carcinoma-dominated cohorts, warrant further functional validation.

Humans↗

PubMed1993

Cholinergic modulation of spatial working memory of mice in radial maze performance: retention curve analysis.

Cholinergic modulation of the spatial working memory of mice was investigated in an eight-arm radial maze. The mice were trained to achieve a stable baseline level of performance, and the retention of spatial working memory was then examined by means of imposition of retention intervals of 45, 90, 180, and 360 min between choices four and five. The animals were removed from the apparatus during these intervals. The effects of oxotremorine (0.025-0.1 mg/kg, ip), physostigmine (0.025-0.1 mg/kg, ip), and scopolamine (0.1-0.4 mg/kg, ip) on the number of the correct responses after the various time intervals (5-8 choices) were studied. Mice received drug injections 30 min prior to the first four arm-choices before delay intervals (1-4 choices). The number of correct responses after the intervals decreased with the increased length of the retention interval. Oxotremorine and physostigmine exhibited dose-dependent stimulating effects of resistance to decreases in the number of correct responses, but scopolamine potentiated the decline in a dose-dependent manner. Significant interactions between the effects of cholinergic drugs and the length of retention over time were also observed. These observations indicate a cholinergic modulation of spatial working memory in mice engaged in radial maze performance, as assessed by means of retention curve analysis.

Animals↗

PubMed2002

Differences in spatial autocorrelation between four sub-populations of Alnus trabeculosa Hand.-Mazz. (Betulaceae).

To investigate the spatial structure of Alnus trabeculosa Hand.-Mazz, we compared three sub-populations at Imaichi in Tochigi Prefecture and one sub-population at Juo in Ibaraki Prefecture, Japan. A total of 269 trees, covering 0.71 ha in total, were mapped and genetically analyzed using nine enzyme systems encoding 13 isozyme loci. There were no significant differences between the four sub-populations in terms of Na,Ne, H(o), H(e )and F(IS). However, according to spatial autocorrelation analysis, the Juo sub-population, which is younger than the others, showed an aggregation of multilocus genotypes, especially within 25 m radii. In contrast with the Juo sub-population, those in Imaichi showed no clear spatial structuring. In the three Imaichi sub-populations, gametic phase disequilibrium is attributable to heterogeneity of genotype frequencies, but in the Juo sub-population it seems to be due to other factors, connected with the composition of the trees in the sub-population and/or its founder population, gene flow and asexual propagation. To conserve as much as possible of the genes or genotypes in restricted areas, conservation of populations that do not show clear family structures, such as those in Imaichi, would be most effective.

Betulaceae↗

PubMed1994

[Modern image analysis processes as support for spatial reconstruction of histological structures].

Spatial reconstruction of anatomic and histologic structures is of increasing importance in biological and medical research. A special kind of disease--hereditary opalescent dentine (HOD)--offered a good chance for the use of a comfortable image-analysis system (IBAS, Kontron) in combination with a special software for three-dimensional reconstruction. New aspects of the morphologic organisation of a key structure of HOD--the giant dentinal canals--could be shown, thus supporting the hypothesis of a vasal origin.

Adolescent↗

PubMed1997

[Contribution of the topographical analysis to quantitative microscopy in cultured cell systems: application to the evaluation of hormone therapy].

Quantitative microscopy by image analysis allows not only to measure various parameters on each cell but also to consider the global population as a whole. In the hypothesis that cell position is reflecting the relational and dynamical structure of the system, spatial arrangement analysis may help to show up intercellular communication (interactions and control systems via contact or diffusible factors). We describe a topographical analysis method used to study these neighbour relationships, and thus the sociological behaviour of the cells. It is applied to the study of the effect of estrogenic and antiestrogenic treatments on a breast cancer cell line (MCF-7). It shows up that estrogens increase proliferation and induce an unusual topographical behaviour, notably in cell cycle phases: cells in S phases are very randomly distributed. It points out the role of estrogens on the cells neighbour relationships inducing the way to a permissive proliferation context. This effect is reversed by antiestrogenic treatment after a few days. Antiestrogenic treatment alone increases the proliferation constraint.

Breast Neoplasms↗

PubMed2003

Is static spatial performance distinguishable from dynamic spatial performance? A latent-variable analysis.

There is disagreement among researchers about the distinction between dynamic and static spatial performance. Given that dynamic spatial performance is supposed to be important for some occupations, such as air traffic control (ATC), it is germane to have evidence about the likelihood of that distinction. In the present study, a battery of printed static spatial and reasoning tests were applied to 480 applicants for an ATC training course. Two dynamic spatial tests were also applied. Confirmatory factor analyses were performed for testing three models. In Model A, static and dynamic spatial tests were grouped, whereas in Model B, spatial tests were separated according to their static or dynamic character, and in Model C, spatial tests were segregated according to the construct they tapped (visualization or spatial relations). The authors found that Model B, which distinguished static and dynamic spatial tests, showed the best fit. They also discuss some implications of the findings.

Adult↗

PubMed1997

Normative models and healthcare planning: network-based simulations within a geographic information system environment.

OBJECTIVES: Network analysis to integrate patient, transportation and hospital characteristics for healthcare planning in order to assess the role of geographic information systems (GIS). A normative model of base-level responses of patient flows to hospitals, based on estimated travel times, was developed for this purpose. DATA SOURCES/STUDY SETTING: A GIS database developed to include patient discharge data, locations of hospitals, US TIGER/Line files of the transportation network, enhanced address-range data, and U.S. Census variables. The study area included a 16-county region centered on the city of Charlotte and Mecklenburg County, North Carolina, and contained 25 hospitals serving nearly 2 million people over a geographic area of nearly 9,000 square miles. STUDY DESIGN: Normative models as a tool for healthcare planning were derived through a spatial Network analysis and a distance optimization model that was implemented within a GIS. Scenarios were developed and tested that involved patient discharge data geocoded to the five-digit zip code, hospital locations geocoded to their individual addresses, and a transportation network of varying road types and corresponding estimated travel speeds to examine both patient discharge levels and a doubling of discharge levels associated with total discharges and DRG 391 (Normal Newborns). The Network analysis used location/allocation modeling to optimize for travel time and integrated measures of supply, demand, and impedance. DATA COLLECTION/EXTRACTION METHODS: Patient discharge data from the North Carolina Medical Database Commission, address-ranges from the North Carolina Institute for Transportation Research and Education, and U.S. Census TIGER/Line files were entered-into the ARC/INFO GIS software system for analysis. A relational database structure was used to organize the information and to link spatial features to their attributes. PRINCIPAL FINDINGS: Advances in healthcare planning can be achieved by examining baseline responses of patient flows to distance optimization simulations and healthcare scenarios conducted within a spatial context that uses a normative model to integrate characteristics of population, patients, hospitals, and transportation networks. Model runs for the defined scenarios indicated that a doubling of the 1991 patient discharge levels resulted in an areal constriction of the service areas to those zip codes immediately adjacent to the hospitals, thereby leaving substantial areas unassigned to hospitals during the allocation process, but that doubling the demand for obstetrics care (DRG 391) resulted in little change in the pattern of accessibility to care as indicated by the size, orientation, and pattern of the service areas. CONCLUSIONS: The GIS-Network system supported "what if" simulations, portrayed service areas within a spatial context, integrated disparate data in the execution of the location/allocation model, and used estimated travel time along a transportation network instead of Euclidean distance for calculating accessibility. The results of the simulations suggest that the GIS-Network system is an effective approach for exploring a variety of healthcare scenarios where changes in the supply, demand, and impedance variables can be examined within a spatial context and where variations in system trajectories can be simulated and observed.

Computer Communication Networks↗

PubMed1999

Spatial regularization applied to factor analysis of medical image sequences (FAMIS).

Dynamic image sequences allow physiological mechanisms to be monitored after the injection of a tracer. Factor analysis of medical image sequences (FAMIS) hence creates a synthesis of the information in one image sequence. It estimates a limited number of structures (factor images) assuming that the tracer kinetics (factors) are similar at each point inside the structure. A spatial regularization method for computing factor images (REG-FAMIS) is proposed to remove irregularities due to noise in the original data while preserving discontinuities between structures. REG-FAMIS has been applied to two sets of simulations: (a) dynamic data with Gaussian noise and (b) dynamic studies in emission tomography (PET or SPECT), which respect real tomographic acquisition parameters and noise characteristics. Optimal regularization parameters are estimated in order to minimize the distance between reference images and regularized factor images. Compared with conventional factor images, the root mean square error between regularized images and reference factor images is improved by 3 for the first set of simulations, and by about 1.5 for the second set of simulations. In all cases, regularized factor images are qualitatively and quantitatively improved.

Algorithms↗

PubMed1978

Spatial structures in a reaction-diffusion system--detailed analysis of the "Brusselator".

Continuous dependence of spatially nonuniform concentration profiles for the 'Brussellator" reaction mechanims on the characteristic length of the system is given both for zero flux and fixed boundary conditions. Branches of solutions arising through primary bifurcation form closed curves. Secondary bifurcations giving rise to spatially asymmetric solutions exist for fixed boundary conditions. Results of a stability analysis of individual solutions are discussed. A method of composing complex spatial profiles for higher lengths from elementary solutions for smaller lenghts is suggested and tested in the case of zero flux boundary conditions. Emergence of subsequently more complex stable patterns in dependence on increasing length of the system suggests many similarities to gradual build up of complex morphogenetic patterns.

Biological Transport↗

PubMed1997

Cognitive correlates of complexity of children's drawings.

240 children (60 each at ages 4, 6, 8, and 10 years) were administered Dennis' (1987) Five Drawing Tasks and five additional developmental tasks. Three hypotheses were tested: that object recognition and working memory would be related to increasing complexity, that both would load on separate factors, and that higher-order analyses would indicate an underlying second-order spatial factor. Analysis included very strong zero-order correlations with age. When age was partialed out, three first-order factors were obtained. Higher-order analyses yielded one second-order factor which appeared related to a general factor of spatial intelligence.

Age Factors↗

PubMed2004

[Statistical methods to analyze risk with spatial distribution patterns].

The development of the geographic information systems has improved the interest in analyzing the characteristics of the population, taking into account the place where they live. The health of the population, measured as the risk of morbidity or mortality, is conditioned by the variety of risk factors characteristic of the region which cannot be measured. Analysis of spatial models considers the dependence of the health indicators between close regions. This dependence is due to the existence of the risk factors that are not measured but are shared by the region. Thus, the spatial distribution of these indicators depends on the geographic pattern of these risk factors. In this study, some limitations of the standardized methods and the Poisson regression used to model the spatiality are discussed and the advantages of the spatial models are shown. The methodology is illustrated by the insulin-dependent diabetes type 1 data from Catalonia during 1989 and 1998.

Demography↗

PubMed1981

Real time computerization of two-dimensional echocardiography.

A computerized system was developed for real time acquisition, enhanced processing, analysis, and display of cross-sectional images of the left ventricle derived by two-dimensional echocardiography (2DE). The new methodology couples a standard medical imaging computer system to the video output of any current 2DE unit, uses a 128 x 128 or 64 x 64 matrix window and stores the real time 30 frames/sec digitized images on a magnetic disk. Computerized beat-to-beat and frame-by-frame processing employs space-time smoothing the automatic detection of endocardial interfaces by standard threshold and second derivative techniques. Multiple views are displayed in real time with 256 levels of gray and color. The methodology was used to analyze and graphically display frame-by-frame changes throughout the cardiac cycle. In addition, regional wall motion and thickness were analyzed in 12 sectors of individual cross-sections using a standardized angular subdivision originating at the center of area and indexed by an external reference point. An algorithm was developed to correct cross-sectional interference definition from the commonly used trailing-to-leading edge to the more valid leading-to-leading outline technique. Computerized analysis of spatial and temporal variations of cardiac contraction were demonstrated in several clinical and experimental applications, including bicycle exercise testing, investigation of acute myocardial infarction, and assessment of interventions. Initial evaluation indicates that the new real time computerized digital acquisition and data analysis represents a major advances toward quantitation of left ventricular function using 2DE.

Animals↗

PubMed2005

Within-population spatial genetic structure, neighbourhood size and clonal subrange in the seagrass Cymodocea nodosa.

Abstract The extent of clonality within populations strongly influences their spatial genetic structure (SGS), yet this is hardly ever thoroughly analysed. We employed spatial autocorrelation analysis to study effects of sexual and clonal reproduction on dispersal of the dioecious seagrass Cymodocea nodosa. Analyses were performed both at genet level (i.e. excluding clonal repeats) and at ramet level. Clonal structure was characterized by the clonal subrange, a spatial measure of the linear limits where clonality still affects SGS. We show that the clonal subrange is equivalent to the distance where the probability of clonal identity approaches zero. This combined approach was applied to two meadows with different levels of disturbance, Cadiz (stable) and Alfacs (disturbed). Genotypic richness, the proportion of the sample representing distinct genotypes, was moderate (0.38 Cadiz, 0.46 Alfacs) mostly due to dominance of a few clones. Expected heterozygosities were comparable to those found in other clonal plants. SGS analyses at the genet level revealed extremely restricted gene dispersal in Cadiz (Sp = 0.052, a statistic reflecting the decrease of pairwise kinship with distance), the strongest SGS found for seagrass species, comparable only to values for selfing herbaceous land plants. At Cadiz the clonal subrange extended across shorter distances (20-25 m) than in Alfacs (30-35 m). Comparisons of sexual and vegetative components of gene dispersal suggest that, as a dispersal vector within meadows, clonal spread is at least as important as sexual reproduction. The restricted dispersal and SGS pattern in both meadows indicates that the species follows a repeated seedling recruitment strategy.

Demography↗

PubMed1999

Green fluorescent protein as a reporter for spatial and temporal gene expression in Streptomyces coelicolor A3(2).

The enhanced green fluorescent protein (EGFP) gene is a modified version of the green fluorescent protein gene of the jellyfish Aequorea victoria with a codon usage that corresponds well to that found in many GC-rich streptomycete genes. Here the use of EGFP as a reporter for the analysis of spatially and temporally regulated gene expression in Streptomyces coelicolor A3(2) is demonstrated. The EGFP gene was inserted into plasmids that can replicate in Escherichia coli, greatly facilitating the construction of EGFP gene fusions. The plasmids can be transferred readily to S. coelicolor by conjugation, whereupon two of them (pIJ8630 and pIJ8660) integrate at the chromosomal attachment site for the temperate phage phiC31. These vectors were used to analyse the spatial and temporal expression of sigF, which encodes a sigma factor required for spore maturation, and of redD, a pathway-specific regulatory gene for the production of undecylprodigiosin, one of the four antibiotics made by S. coelicolor. While transcription of sigF appeared to be confined to developing and mature spore chains, transcription of redD occurred only in ageing substrate mycelium. A further plasmid derivative (pIJ8668) was made that lacks the phiC31 attachment site, allowing the EGFP gene to be fused transcriptionally to genes of interest at their native chromosomal locations.

Bacterial Proteins↗

PubMed2006

GDNF expression during Xenopus development.

Glial cell line-derived neurotrophic factor (GDNF) has multiple roles in kidney morphogenesis, spermatogenesis, and neurogenesis during development. In this study, we report the cloning and expression pattern of Xenopus laevis GDNF. The X. laevis GDNF cDNA sequence has a complete open reading frame of 684 bases, predicting 227 amino acid residues at the protein level. Comparison of the X. laevis GDNF amino acid sequence with those of chick, human, mouse, rat and zebrafish indicates that X. laevis GDNF has 60%-52% and 75%-62% identity over the whole amino acid sequence and for the putative mature forms, respectively. All known functional motifs of GDNF were conserved in the X. laevis sequence. Temporal expression analysis by RT-PCR indicated that GDNF transcripts were first detectable at stage 12 at a low level, and gradually increased up to stage 22. From stage 24, the expression sharply increased and continued at a similar level as development progressed. Spatial expression analysis by whole-mount in situ hybridization showed that the GDNF mRNA was predominantly detected in somites, pronephros, pharyngeal arches, epibranchial placodes, digestive tract and some of the lateral line structure. These results suggest that this X. laevis gene is the orthologue for GDNF.

Amino Acid Sequence↗

PubMed2002

Spatial expression and characterization of a putative ethylene receptor protein NTHK1 in tobacco.

A putative ethylene receptor gene NTHK1 encodes a protein with a putative signal peptide, three transmembrane segments, a putative histidine kinase domain and a putative receiver domain. The receiver domain was expressed in an Escherichia coli expression system, purified and used to generate polyclonal antibodies for immunohistochemistry analysis. The spatial expression of the NTHK1 protein was then investigated. We found that NTHK1 was abundant during flower and ovule development. It was also expressed in glandular hairs, stem, and in leaves that had been wounded. The NTHK1 gene was further introduced into the tobacco plant and we found that, in different transgenic lines, the NTHK1 gene was transcribed to various degrees. Upon ACC treatment, the etiolated transgenic seedlings showed reduced ethylene sensitivity when compared with the control, indicating that NTHK1 is a functional ethylene receptor in plants.

Amino Acids, Cyclic↗