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At least 1,315 records · Page 73Linked to original sources
PubMed1999

Interdependence of the position and orientation of SoxS binding sites in the transcriptional activation of the class I subset of Escherichia coli superoxide-inducible promoters.

SoxS is the direct transcriptional activator of the member genes of the Escherichia coli superoxide regulon. At class I SoxS-dependent promoters, e.g. zwf and fpr, whose SoxS binding sites ('soxbox') lie upstream of the -35 region of the promoter, activation requires the C-terminal domain of the RNA polymerase alpha-subunit, while at class II SoxS-dependent promoters, e.g. fumC and micF, whose binding sites overlap the -35 region, activation is independent of the alpha-CTD. To determine whether SoxS activation of its class I promoters shows the same helical phase-dependent spacing requirement as class I promoters activated by catabolite gene activator protein, we increased the 7 bp distance between the 20 bp zwf soxbox and the zwf -35 promoter hexamer by 5 bp and 11 bp, and we decreased the 15 bp distance between the 20 bp fpr soxbox and the fpr -35 promoter hexamer by the same amounts. In both cases, displacement of the binding site by a half or full turn of the DNA helix prevented transcriptional activation. With constructs containing the binding site of one gene fused to the promoter of the other, we demonstrated that the positional requirements are a function of the specific binding site, not the promoter. Supposing that opposite orientation of the SoxS binding site at the two promoters might account for the positional requirements, we placed the zwf and fpr soxboxes in the reverse orientation at the various positions upstream of the promoters and determined the effect of orientation on transcription activation. We found that reversing the orientation of the zwf binding site converts its positional requirement to that of the fpr binding site in its normal orientation, and vice versa. Analysis by molecular information theory of DNA sequences known to bind SoxS in vitro is consistent with the opposite orientation of the zwf and fpr soxboxes.

Bacterial Proteins↗
PubMedDate not supplied

Collagen fiber orientation as quantified by small angle light scattering in wounds treated with transforming growth factor-beta2 and its neutalizing antibody.

The purpose of this study was determine quantitative differences in collagen fiber orientation in a wound healing model in the presence of transforming growth factor-beta2 and anti-transforming growth factor-beta2,3 antibody. Full-thickness wounds were made in the paravertebral area of two young pigs. Wounds were treated once, topically, with either transforming growth factor-beta2 or anti-transforming growth factor-beta2 antibody, or with methylcellulose gel. Control wounds were left untreated. Tissue biopsies were obtained from each wound on days 7, 14 and 46 post wounding. Tissue sections were stained with hematoxylin and eosin, and collagen fiber preferred orientation was quantified using small angle light scattering. Our results indicated that wounds treated with transforming growth factor-beta2 and anti-transforming growth factor-beta2,3 antibody had a significantly higher degree of orientation of collagen fibers than normal unwounded skin on days 7, 14 and 46 (p < 0.001). Transforming growth factor-beta2- treated wounds had a higher degree of orientation of collagen fibers than control wounds on days 7 and 14 (p < 0.001), and control wounds displayed a higher degree of orientation than wounds treated with anti-transforming growth factor-beta2,3 and normal unwounded skin at all time points (p < 0.001). These results suggest that differences in the dermal collagen degree of orientation correlate with scarring, and show that small angle light scattering can be used quantitatively to assess differences in the collagen fiber architecture of dermal wounds.

Administration, Topical↗
PubMedDate not supplied

The split-line pattern of the distal femur: A consideration in the orientation of autologous cartilage grafts.

PURPOSE: To identify the surface collagen orientations of the distal femur and create a generic cartilage split-line map that could be used as a reference guide for the proper alignment of autogenous cartilage transplants. TYPE OF STUDY: Anatomic, cadaveric study. METHODS: Eight fresh cadaveric knee joints were used to determine the collagen fiber orientation of the superficial layer of the articular cartilage of the distal femur. A split-line technique was used, in which a dissecting needle dipped in India ink was inserted into the cartilage. The resulting split between collagen fibers identified the preferential orientation of the collagen fibers at each needle insertion point. RESULTS: The results of the study show that a precise and consistent orientation of collagen fibers exists in areas that are known to experience significant joint load. CONCLUSIONS: Because the orientation of these split lines is thought to reflect the direction of tensile forces normally seen by the articular cartilage at a specific area, we hypothesize that proper orientation of autogenous cartilage plugs (with respect to split-line direction) may maximize resistance to these tensile forces and thus optimize the long-term health of these cartilage plugs.

Adult↗
PubMed2005

Orientational dynamics of water confined on a nanometer length scale in reverse micelles.

The time-resolved orientational anisotropies of the OD hydroxyl stretch of dilute HOD in H(2)O confined on a nanometer length scale in sodium bis(2-ethylhexyl) sulfosuccinate (AOT) reverse micelles are studied using ultrafast infrared polarization and spectrally resolved pump-probe spectroscopy, and the results are compared to the same experiments on bulk water. The orientational anisotropy data for three water nanopool sizes (4.0, 2.4, and 1.7 nm) can be fitted well with biexponential decays. The biexponential decays are analyzed using a wobbling-in-a-cone model that involves fast orientational diffusion within a cone followed by slower, full orientational relaxation. The data provide the cone angles, the diffusion constants for motion within the cones, and the final diffusion constants as a function of the nanopool size. The two processes can be interpreted as a local angular fluctuation of the OD and a global hydrogen bond network rearrangement process. The trend in the relative amplitudes of the long and short exponential decays suggest an increasing rigidity as the nanopool size decreases. The trend in the long decay constants indicates a longer hydrogen bond network rearrangement time with decreasing reverse micelle size. The anisotropy measurements for the reverse micelles studied extrapolate to approximately 0.33 rather than the ideal value of 0.4, suggesting the presence of an initial inertial component in the anisotropy decay that is too fast to resolve. The very fast decay component is consistent with initial inertial orientational motion that is seen in published molecular-dynamics simulations of water in AOT reverse micelles. The angle over which the inertial orientational motion occurs is determined. The results are in semiquantitative agreement with the molecular-dynamics simulations.

Colloids↗
PubMed2006

Multiple short time power laws in the orientational relaxation of nematic liquid crystals.

Relaxation in the nematic liquid crystalline phase is known to be sensitive to its proximity to both isotropic and smectic phases. Recent transient optical Kerr effect (OKE) studies have revealed, rather surprisingly, two temporal power laws at short to intermediate times and also an apparent absence of the expected exponential decay at longer times. In order to understand this unusual dynamics, we have carried out extensive molecular dynamics simulations of transient OKE and related orientational time correlation functions in a system of prolate ellipsoids (with aspect ratio equal to 3). The simulations find two distinct power laws, with a crossover region, in the decay of the orientational time correlation function at short to intermediate times (in the range of a few picoseconds to a few nanoseconds). In addition, the simulation results fail to recover any long time exponential decay component. The system size dependence of the exponents suggests that the first power law may originate from the local orientational density fluctuations (like in a glassy liquid). The origin of the second power law is less clear and may be related to the long range fluctuations (such as smecticlike density fluctuations)--these fluctuations are expected to involve small free energy barriers. In support of the latter, the evidence of pronounced coupling between orientational and spatial densities at intermediate wave numbers is presented. This coupling is usually small in normal isotropic liquids, but it is large in the present case. In addition to slow collective orientational relaxation, the single particle orientational relaxation is also found to exhibit slow dynamics in the nematic phase in the long time.

Journal Article↗
PubMed2002

Effect of mechanical aortic valve orientation on coronary artery flow: comparison of tilting disc versus bileaflet prostheses in pigs.

OBJECTIVE: Orientation for optimal systolic performance of tilting disc and bileaflet aortic valves was defined in previous studies. The present study investigates the influence of valve orientation on coronary artery flow in an animal model. METHODS: A rotation device holding either a Medtronic Hall tilting disc (n = 4; Medtronic, Inc, Minneapolis, Minn), a St Jude Medical bileaflet (n = 4; St Jude Medical, Inc, St Paul, Minn), or a Medtronic Advantage bileaflet (n = 3) aortic valve was implanted. The device allowed rotation of the valve without reopening the aorta. Flow through the left anterior descending coronary artery was measured preoperatively and at normal versus high cardiac output after weaning from extracorporeal circulation. Measurements were performed at the best and worst hemodynamic position, as defined previously. RESULTS: Coronary flow rates were similar in all animals preoperatively (26 +/- 4.1 mL/min). After aortic valve replacement, left anterior descending flow increased significantly to 58.2 +/- 10.6 mL/min. Highest flow rates at normal cardiac output were found in the optimum orientation, especially for the Medtronic valves (Medtronic Hall, 64 +/- 8.7 mL/min; Medtronic Advantage, 64.6 +/- 11.6 mL/min; St Jude Medical, 48.3 +/- 10.3 mL/min), whereas the worst position demonstrated significantly lower left anterior descending flow, with no differences among valves (Medtronic Hall, 37.5 +/- 1.3 mL/min; St Jude Medical, 35.7 +/- 10.7 mL/min; Medtronic Advantage, 39.8 +/- 10 mL/min). Left anterior descending artery flow increased significantly with higher cardiac output. CONCLUSIONS: Coronary blood flow was significantly influenced by mechanical aortic valve implantation and the orientation of prostheses. For both valve designs, the previously defined optimum orientation with respect to pressure gradients and turbulence demonstrated the highest left anterior descending flow rates. Even in its optimum orientation, the St Jude Medical valve showed significantly lower coronary flow than the other valves.

Animals↗
PubMed1995

Parallel independent encoding of orientation, spatial frequency, and contrast.

Subjects were presented with a set of 216 test gratings in random order. Each had a different combination of orientation, spatial frequency, and contrast. For each test grating, subjects were instructed to judge whether or not orientation was clockwise of the mean of the stimulus set, whether or not spatial frequency was higher than the mean of the stimulus set, and whether or not contrast was higher than the mean of the stimulus set. Each of the three sets of button presses was analyzed with respect to each of the three parameters, giving nine psychometric functions from one response set. It is concluded that, for gratings of high visibility, changes of orientation, spatial frequency, and contrast are encoded independently and in parallel, at least for small changes in these three visual parameters. In another experiment only one of the three parameters was varied at a time. Neither orientation-discrimination threshold, nor spatial-frequency-discrimination threshold, nor contrast-discrimination threshold was appreciably, if at all, lower than when all three parameters were varied simultaneously. It is concluded that interactions between the processing of small changes in orientation, spatial frequency, and contrast are negligible when all three are processed simultaneously. It is proposed that trial-to-trial variations of orientation, spatial frequency, and contrast are unconfounded by opponent processing within a population of neurons, each of which confounds the three variables.

Adult↗
PubMed1997

Discrimination of complex patterns: orientation information is integrated across spatial scale; spatial-frequency and contrast information are not.

Real-world objects are complex, containing information at multiple orientations and spatial scales. It is well established that at initial cortical stages of processing, local information about an image is separately represented at multiple spatial scales. However, it is not yet established how these early representations are later integrated across scale to signal useful information about complex stimulus features, such as edges and textures. In the studies reported here, we investigate the scale-integration processes involved in distinguishing among complex patterns. We use a concurrent-response paradigm in which observers simultaneously judge two components of compound gratings that differ widely in spatial frequency. In different experiments, each component takes one of two slightly different values along the dimensions of spatial frequency, contrast, or orientation. Using analyses developed within the framework of a multivariate extension of signal-detection theory, we ask how information about the frequency, contrast, or orientation of the components is or is not integrated across the two grating components. Our techniques permit us to isolate and identify interactions due to excitatory or inhibitory processes from effects due to noise, and to separately assess any attentional limitations that might occur in processing. Results indicate that orientation information is fully integrated across spatial scales within a limited orientation band and that decisions are based entirely on the summed information. Information about spatial frequency and contrast is not summed over spatial scale; cross-scale results show sensory independence. However, our results suggest that observers cannot simultaneously use information about frequency or contrast when it is presented at different spatial scales. Our results provide direct evidence for the existence of a higher-level summing circuit tailored to signal information about orientation. The properties of this mechanism differ substantially from edge-detector mechanisms proposed by Marr and others.

Female↗
PubMed1998

Illumination-induced apparent shift in orientation of human heads.

Changing the position of a light source illuminating a human face induces an apparent shift of the perceived orientation of that face. The direction of this apparent shift is opposite to the shift of the light source. We demonstrated the illumination-induced apparent orientation shift (IAOS), quantified it in terms of the physical orientation shift needed to compensate for it, and evaluated the results in the context of possible mechanisms underlying orientation judgment. Results indicate that IAOS depends not only on the angle between the two light source positions, but also on the mean orientation of the face. Availability of cues coded in the visual texture of the face did not affect IAOS. The most effective cue was the location of the visible outline of the face. IAOS seems to be due to a shift of this outline when shadowed areas on the face merge with the black background. We conclude that an important mechanism for orientation judgment is based on a comparison of visible parts left and right of the profile line.

Adolescent↗
PubMed2000

A neuronal network model of macaque primary visual cortex (V1): orientation selectivity and dynamics in the input layer 4Calpha.

In this paper, we offer an explanation for how selectivity for orientation could be produced by a model with circuitry that is based on the anatomy of V1 cortex. It is a network model of layer 4Calpha in macaque primary visual cortex (area V1). The model consists of a large number of integrate-and-fire conductance-based point neurons, both excitatory and inhibitory, which represent dynamics in a small patch of 4Calpha-1 mm(2) in lateral area-which contains four orientation hypercolumns. The physiological properties and coupling architectures of the model are derived from experimental data for layer 4Calpha of macaque. Convergent feed-forward input from many neurons of the lateral geniculate nucleus sets up an orientation preference, in a pinwheel pattern with an orientation preference singularity in the center of the pattern. Recurrent cortical connections cause the network to sharpen its selectivity. The pattern of local lateral connections is taken as isotropic, with the spatial range of monosynaptic excitation exceeding that of inhibition. The model (i) obtains sharpening, diversity in selectivity, and dynamics of orientation selectivity, each in qualitative agreement with experiment; and (ii) predicts more sharpening near orientation preference singularities.

Animals↗
PubMed1986

From basic network principles to neural architecture: emergence of orientation columns.

Orientation-selective cells--cells that are selectively responsive to bars and edges at particular orientations--are a salient feature of the architecture of mammalian visual cortex. In the previous paper of this series, I showed that such cells emerge spontaneously during the development of a simple multilayered network having local but initially random feedforward connections that mature, one layer at a time, according to a simple development rule (of Hebb type). In this paper, I show that, in the presence of lateral connections between developing orientation cells, these cells self-organize into banded patterns of cells of similar orientation. These patterns are similar to the "orientation columns" found in mammalian visual cortex. No orientation preference is specified to the system at any stage, none of the basic developmental rules is specific to visual processing, and the results emerge even in the absence of visual input to the system (as has been observed in macaque monkey).

Cell Communication↗
PubMed2003

Curariform antagonists bind in different orientations to acetylcholine-binding protein.

Acetylcholine-binding protein (AChBP) recently emerged as a prototype for relating structure to function of the ligand binding domain of nicotinic acetylcholine receptors (AChRs). To understand interactions of competitive antagonists at the atomic structural level, we studied binding of the curare derivatives d-tubocurarine (d-TC) and metocurine to AChBP using computational methods, mutagenesis, and ligand binding measurements. To account for protein flexibility, we used a 2-ns molecular dynamics simulation of AChBP to generate multiple snapshots of the equilibrated dynamic structure to which optimal docking orientations were determined. Our results predict a predominant docking orientation for both d-TC and metocurine, but unexpectedly, the bound orientations differ fundamentally for each ligand. At one subunit interface of AChBP, the side chain of Tyr-89 closely approaches a positively charged nitrogen in d-TC but is farther away from the equivalent nitrogen in metocurine, whereas, at the opposing interface, side chains of Trp-53 and Gln-55 closely approach the metocurine scaffold but not that of d-TC. The different orientations correspond to approximately 170 degrees rotation and approximately 30 degrees degree tilt of the curare scaffold within the binding pocket. Mutagenesis of binding site residues in AChBP, combined with measurements of ligand binding, confirms the different docking orientations. Thus structurally similar ligands can adopt distinct orientations at receptor binding sites, posing challenges for interpreting structure-activity relationships for many drugs.

Amino Acid Sequence↗
PubMed2004

A new CT method for measuring cup orientation after total hip arthroplasty: a study of 10 patients.

BACKGROUND: It is difficult to assess the orientation of the acetabular component on routine radiographs. We present a method for determining the spatial orientation of the acetabular component after total hip arthroplasty (THA) using computed tomography. PATIENTS AND METHODS: Two CT-scans, 10 min apart, were obtained from each of 10 patients after THA. Using locally developed software, two independent examiners measured the orientation of the acetabular component in relation to the pelvis. The measurements were repeated after one week. To be independent of the patient position during scanning, the method involved two steps. Firstly, a 3D volumetric image of the pelvis was brought into a standard pelvic orientation, then the orientation of the acetabular component was measured. The orientation of the acetabular component was expressed as operative anteversion and inclination relative to an internal pelvic reference coordinate system. To evaluate precision, we compared measurements across pairs of CT volumes between observers and trials. RESULTS: Mean absolute interobserver angle error was 2.3 degrees for anteversion (range 0-6.6 degrees), and 1.1 degrees for inclination (range 0-4.6 degrees). For interobserver measurements, the precision, defined as one standard deviation, was 2.9 degrees for anteversion, and 1.5 degrees for inclination. A Student's t-test showed that the overall differences between the examiners, trials, and cases were not significant. Data were normally distributed and were not dependent on examiner or trial. INTERPRETATION: We conclude that the implant angles of the acetabular component in relation to the pelvis could be detected repeatedly using CT, independently of patient positioning.

Adult↗
PubMed2001

Antibodies to Chlamydia pneumoniae in young Swedish orienteers.

During 1992-93 sera from 1790 Swedish elite orienteers were tested for antibodies to Chlamydia pneumoniae. The reason for this was that a cluster of 16 cases of sudden unexpected cardiac death had occurred among Swedish orienteers and DNA from C. pneumoniae had been found in the myocarditic heart and in the lung in 1 of 2 deceased athletes in whom testing was feasible; in addition, C. pneumoniae IgG was found in all 5 cases where serum was available. Among the orienteers, the prevalence rates of IgG antibodies in males and females were 54% (n = 1194) and 50% (n = 596), respectively. The corresponding figures for 319 male and female blood donors were 60% (n = 169) and 53% (n = 150), respectively. These differences are not statistically significant. Male orienteers had a lower prevalence of IgA antibodies than male blood donors (19% and 26%, respectively; p < 0.05), while no such difference was found in females (16% and 18%). The prevalence of IgM antibodies was < 1% in all groups. Neither the performance level of the orienteers nor the place of residence affected the antibody prevalence. In conclusion, Swedish orienteers do not show a higher prevalence of antibodies to C. pneumoniae than healthy blood donors.

Adolescent↗
PubMed2004

Low seroprevalence of bartonella species in danish elite orienteers.

In the 1990s, studies were conducted to investigate 16 episodes of sudden unexpected cardiac death (SUCD) among Swedish elite orienteers during the period from 1979 to 1992. A case control study revealed that a significantly higher proportion of Swedish elite orienteers were B. elizabethae seropositive compared to controls. The aim of our study, designed as a case-control study, was to determine whether similarly high rates of B. elizabethae seropositivity were present among Danish elite orienteers. Cases were 43 elite orienteers; controls were 159 blood donors and 63 elite indoor sportsmen. All participants were tested for antibodies against B. henselae, B. quintana and B. elizabethae using immunofluorescent antibody tests. Surprisingly, Bartonella antibodies were only detected in sera from 5 persons: B. henselae from 1 elite orienteer, 1 handball player and 1 blood donor. B. elizabethae antibodies were detected in 1 handball player and 1 basketball player. We found no association between elite orienteers and the prevalence of Bartonella antibody positivity. This is in contrast to the Swedish study, and might be explained by the use of different serological methods in the 2 studies; to determine whether it is a true difference, a new study is needed.

Adult↗
PubMed1993

Domain specifications and content representativeness of the revised Value Orientation Inventory.

Value orientations represent theoretical belief systems that guide teachers' curricular decision making. Research using the Value Orientation Inventory (VOI) to examine physical educators' value orientations in school settings found inconsistencies between the inventory findings, descriptions of class environments, and teachers' self-reports of their curricular goals. This article reports the VOI revision process that included (a) literature and research reviews resulting in domain specifications and new VOI item development and (b) item ratings that provide evidence of content representativeness for the revised items. The reviews supported four of five orientations that formed the original theoretical framework for the VOI: disciplinary mastery, learning process, self-actualization, and ecological integration. The fifth orientation, social reconstruction, was not supported by school-based research. Findings were more consistent with a social responsibility orientation. New items (K = 150) were written based on the literature reviews. The new items were sent to university and public school teachers (N = 298) to assess content representativeness. Eighty-one percent of the item means were > 4.0 on a 5-point scale. The social responsibility items were found to be domain representative and were included in the revised inventory.

Achievement↗
PubMed1996

The Task and Ego Orientation in Sport Questionnaire: construct equivalence and mean differences across gender.

Research on achievement goal orientation in sport has relied primarily on traditional statistical methodology to examine group mean differences. Unfortunately, examination of the measurement model is generally ignored prior to means testing. This study reports an application of structural equation modeling (SEM) in testing measurement invariance and latent mean structure of the Task and Ego Orientation in Sport Questionnaire (TEOSQ; Duda & Nicholls, 1989) using male and female college students. A confirmatory factor analysis for testing invariance revealed invariant measurement properties and factor structures across gender, indicating that task and ego orientation are similarly conceptualized by male and female students. Subsequent testing of latent mean structures, however, showed significant gender differences with respect to ego orientation, but no difference in task orientation. The SEM procedures used in the present study demonstrate additional construct validity and internal consistency reliability for the TEOSQ and, by confirming its factor structure, provide a sound psychometric basis for its continued use in substantive studies focusing on the comparison of achievement goal orientation across gender.

Achievement↗
PubMed1997

Goal orientation and the modeling process: an individual's focus on form and outcome.

One's achievement goal orientation (e.g., task, ego) is suggested to reflect a differential focus on skill mastery and performance outcome (Duda, 1992). Goal orientation has further been suggested to be an important observer characteristic in the observational learning of motor skills (McCullagh, Weiss, & Ross, 1989). This study assessed the relationship between goal orientation and a focus on form and outcome aspects of a motor skill demonstration with college students (N = 30) having low perceived ability, knowledge, and experience in tennis. Participants viewed several videotaped demonstrations of a correctly performed tennis forehand and then visual recognition and verbal recall accuracy of form and outcome task characteristics were assessed. A canonical correlation analysis revealed a nonsignificant relationship between goal orientation and recall and recognition of form and outcome task characteristics. These results provide preliminary evidence to suggest that goal orientation may not be an important observer characteristic in the learning phase of the modeling process. Also, achievement goal orientations may not be associated with a differential focus on skill mastery or performance outcome but instead remain a reflection of divergent processes of success evaluation.

Adult↗