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At least 1,297 records · Page 72Linked to original sources
PubMed1999

Spatial variation of anthropometric traits in Ireland.

To further elucidate the relationship between geography and genetics in Ireland, we considered variation in anthropometric traits of adult males by town using spatial autocorrelation methods. By describing and distinguishing significant patterns of anthropometric variation, we determined whether the anthropometric traits display a simple pattern of spatial variation, as predicted by the isolation by distance model, or other patterns of spatial variation. Several hypotheses were examined, including (1) whether there was spatial patterning of 20 anthropometric phenotypic distributions and 7 principal components of Irish males and (2) if there was, whether these phenotypic distributions could be explained by a simple isolation by distance model. The results of this study can be summarized by several key findings: (1) There is significant spatial patterning among towns, as detected in correlograms of 14 anthropometric traits and 2 principal component factor scores (values of Moran's I ranging from 0.7510 to -0.3616, p < or = 0.0071); (2) 4 spatial patterns were detected, including clinical patterns, long-distance differentiation, distance distinction, and regional patchiness. These results suggest several likely causes of the observed spatial patterns. First, in Ireland patterns of anthropometric variation could not be explained by a single spatial pattern (i.e., isolation by distance). Second, through an examination of the various combinations of statistical homogeneity or heterogeneity, spatial patterning or nonpatterning, and similarity or dissimilarity of spatial patterns, we conclude that several migrational events structured the genetic landscape of Ireland.

Adult↗
PubMed2004

Profiling Cu,Zn-superoxide dismutase expression in Drosophila melanogaster--a critical regulatory role for intron/exon sequence within the coding domain.

Cu,Zn-superoxide dismutase (SOD1) represents along with catalase the first coordinated line of defense against ROS and is found in all aerobic organisms. The dissection of the regulatory controls that drive the expression of SOD1 may provide further insight into the functional significance of this enzyme. The aim of this study was to elucidate temporal and spatial patterns of SOD1 expression, as well as to identify gene domains that govern its expression. Immunostaining analysis was used to delineate marked tissue and stage-specific expression patterns during the course of development and aging. By and large, there were no significant alterations in SOD1 mRNA and protein levels in response to the stress that accompanies aging, nor in response to different environmental insults, such as heat and hyperoxia. Expression of SOD1 seems to be largely determined by intrinsic factors. By histochemical analysis of transgenics carrying various sod1-reporter gene fusions, it was also possible to identify sequence domains, governing SOD1 expression. In particular a 1140 base pair region, composed of the single sod1 intron along with exon 2, was found to be essential for permitting spatial and temporal expression patterns that approximate normal endogenous expression.

Aging↗
PubMed1996

Persistence of multispecies host-parasitoid interactions in spatially distributed models with local dispersal.

Recent theoretical studies have shown that dispersal between neighbouring local populations can promote the persistence of interacting metapopulations, even when the local dynamics are unstable and the environment is uniform. This persistence is associated with striking and self-organized spatial patterns in the densities of the local populations. Here we extend previous work on spatially distributed host-parasitoid interactions to wider questions of community structure, by considering various three-species systems: two parasitoid species attacking a common host species; two host species attacked by a single parasitoid species; or a host-parasitoid-hyperparasitoid interaction. In each of these cases, multispecies coexistence of the total populations can occur, even though the local population dynamics are unstable. Furthermore, co-existence tends to be accompanied by some degree of persistent spatial segregation of the competing species, despite the completely uniform environment. At its most extreme, this results in one species being confined to small, relatively static, "islands" within the habitat, giving the appearance of isolated pockets of favourable habitat. That dynamics can impose and maintain such "self-organizing" spatial segregation of competing species, has interesting implications for understanding the local abundance of natural populations.

Animals↗
PubMed2001

Choropleth mapping of regional count data of Echinococcus multilocularis among red foxes in Lower Saxony, Germany.

In this paper, choropleth maps display the geographical distribution of Echinococcus multilocularis in red foxes in Lower Saxony. Areas of high prevalence of the infection in foxes and with high fox population density pose high risk for the human population for alveolar echinococcosis. Spatial statistical methods were used to analyse regional count data obtained from 5365 hunted or found-dead foxes. Spatial smoothing (of raw estimates of regional prevalences based on count data before mapping) was used because raw estimates can give an erratic impression of the spatial pattern of the infection. For smoothing, empirical Bayesian methods are used as an explorative spatial epidemiological tool. The resulting map showed the geographical variation of the estimated prevalences around a median at 9% and indicated the presence of spatial-trend effects. Based on this finding, conditional autoregressive spatial modelling for Freeman-Tukey transformed data was used as an inferential spatial epidemiological tool. There were significant additive linear and quadratic spatial-trend effects with elevated prevalences in the north and south and extreme values (prevalences>38%) for the south of Lower Saxony.

Animals↗
PubMed2004

Simulated apoptosis/neurogenesis regulates learning and memory capabilities of adaptive neural networks.

Characterization of neuronal death and neurogenesis in the adult brain of birds, humans, and other mammals raises the possibility that neuronal turnover represents a special form of neuroplasticity associated with stress responses, cognition, and the pathophysiology and treatment of psychiatric disorders. Multilayer neural network models capable of learning alphabetic character representations via incremental synaptic connection strength changes were used to assess additional learning and memory effects incurred by simulation of coordinated apoptotic and neurogenic events in the middle layer. Using a consistent incremental learning capability across all neurons and experimental conditions, increasing the number of middle layer neurons undergoing turnover increased network learning capacity for new information, and increased forgetting of old information. Simulations also showed that specific patterns of neural turnover based on individual neuronal connection characteristics, or the temporal-spatial pattern of neurons chosen for turnover during new learning impacts new learning performance. These simulations predict that apoptotic and neurogenic events could act together to produce specific learning and memory effects beyond those provided by ongoing mechanisms of connection plasticity in neuronal populations. Regulation of rates as well as patterns of neuronal turnover may serve an important function in tuning the informatic properties of plastic networks according to novel informational demands. Analogous regulation in the hippocampus may provide for adaptive cognitive and emotional responses to novel and stressful contexts, or operate suboptimally as a basis for psychiatric disorders. The implications of these elementary simulations for future biological and neural modeling research on apoptosis and neurogenesis are discussed.

Animals↗
PubMed2002

Molecular-feature domains with posterodorsal-anteroventral polarity in the symmetrical sensory maps of the mouse olfactory bulb: mapping of odourant-induced Zif268 expression.

Individual glomeruli in the mammalian olfactory bulb presumably represent a single type of odourant receptor. Thus, the glomerular sheet provides odourant receptor maps at the surface of the olfactory bulb. To understand the basic spatial organization of the olfactory sensory maps, we first compared the spatial distribution of odourant-induced responses measured by the optical imaging of intrinsic signals with that detected immunohistochemically by expressions of Zif268, one of the immediate early gene products in juxtaglomerular cells. In the dorsal surface of the bulb, we detected a clear correlation in the spatial pattern between these responses. In addition, the molecular-feature domains and their polarities (spatial shifts of responses with an increase in carbon chain length) that were defined by the optical imaging method could be also detected by the Zif268 mapping method. We then mapped the Zif268 signals over the entire olfactory bulb using a homologous series of fatty acids and aliphatic alcohols as stimulus odourants. We superimposed the Zif268 signals onto the standard unrolled map with the help of cell adhesion molecule compartments. Each odourant typically elicited two pairs of clusters of dense Zif268 signals. The results showed that molecular-feature domains and their polarities were arranged symmetrically at stereotypical positions in a mirror-image fashion between the lateral and the medial sensory maps. The polarity of each domain was roughly in parallel with the posterodorsal-anteroventral axis that was defined by the cell adhesion molecule compartments. These results suggest that the molecular-feature domain with its fixed polarity is one of the basic structural units in the spatial organization of the odourant receptor maps in the olfactory bulb.

Animals↗
PubMed1992

Sequential pattern formation in a model for skin morphogenesis.

During morphogenesis regular patterns often develop behind a frontier of pattern formation which travels across the prospective tissue. Here the authors consider the propagating patterns exhibited in a two-dimensional domain by a tissue interaction mechanochemical model for skin pattern formation. It is shown that the model can exhibit travelling waves of complex spatial pattern formation. Two alternative mechanisms that can produce such sequential patterning are presented. In particular, it is demonstrated that the specification of a simple quasi-one-dimensional pattern is all that is required to determine a complex two-dimensional pattern. Finally, the model solutions are related to actual pattern propagation during chick feather primordia initiation.

Animals↗
PubMed2006

Instability criteria and pattern formation in the complex Ginzburg-Landau equation with higher-order terms.

We study the modulational instability and spatial pattern formation in extended media, taking the one-dimensional complex Ginzburg-Landau equation with higher-order terms as a perturbation of the nonlinear Schrödinger equation as a model. By stability analysis for the original partial differential equation, we derive its stability condition as well as the threshold for amplitude perturbations and we show how nonlinear higher-order terms qualitatively change the behavior of the system. The analytical results are found to be in agreement with numerical findings. Modulational instability mediates pattern formation through the lattice. The main feature of the traveling plane waves is its disintegration in pulse train during the propagation through the system.

Journal Article↗
PubMed1994

Overlapping patterns of IGF2 and H19 expression during human development: biallelic IGF2 expression correlates with a lack of H19 expression.

The spatial patterns of IGF2 and H19 gene expression are strikingly similar during parts of human embryonic/fetal and early postnatal development. Notable exceptions were found with the ciliary anlage of the embryonic retina and the choroid plexus/leptomeninges, where transcripts from the IGF2 but not the H19 locus could be detected. Moreover, in contrast to the other tissue samples examined, the choroid plexus/leptomeninges expressed both parental IGF2 alleles. Whilst RNase protection analysis revealed a weak activity of the P1 promoter in the choroid plexus/leptomeninges, the P2, P3 and P4 promoters were all active wherever IGF2 was expressed. We discuss these observations with respect to a hypothesized coordinated control of the reciprocally imprinted and closely linked IGF2 and H19 loci.

Alleles↗
PubMed1995

Expression of mef2 genes in the mouse central nervous system suggests a role in neuronal maturation.

Members of the myocyte enhancer factor 2 (MEF2) gene family are expressed in a dynamic pattern during development of the CNS of pre- and postnatal mice. The four MEF2 genes, Mef2A, -B, -C, -D, encode transcription factors belonging to the MADS (MCM1-agamous-deficiens-serum response factor) superfamily of DNA binding proteins. MEF2 factors have previously been shown to be positive regulators of gene expression in terminally differentiated muscle cells. To begin to determine the role of MEF2 factors in CNS development, we used in situ hybridization with gene-specific cRNA probes to define the expression patterns of each of the four Mef2 mRNAs in the developing and mature mouse CNS. Mef2C mRNA was first detected in a ventral portion of the telencephalon at 11.5 d postcoitum (p.c.). By 13.5 d p.c., each of the four Mef2 genes were expressed in overlapping yet distinct patterns in regions of the frontal cortex, midbrain, thalamus, hippocampus, and hindbrain. Temporal and spatial patterns of embryonic Mef2 gene expression appeared to follow gradients of neuron maturation and suggested that the onset of Mef2 gene expression coincides with withdrawal from the cell cycle and initiation of neuronal differentiation. This correlation is particularly striking for Purkinje cells in the cerebellum. Since the molecular mechanisms that regulate neuron differentiation are unknown, we propose that the MEF2 factors are likely to play an important role in this process.

Animals↗
PubMed1995

Responses to glossopharyngeal stimulus in the early embryonic chick brainstem: spatiotemporal patterns in three dimensions from repeated multiple-site optical recording of electrical activity.

In an effort to assess the spatial patterning of glossopharyngeal responses in the early embryonic chick brainstem, we used a multiple-site optical recording system with a 12 x 12 element photodiode array and a voltage-sensitive merocyanine-rhodanine dye (NK2761) to monitor neural transmembrane voltage activities. Seven and 8 d old embryonic chick brainstems were sliced into 1400-1600 microns thick sections with the glossopharyngeal and vagal nerves attached, and then stained with the dye. Neural voltage-related optical signals were evoked by a positive brief (depolarizing) square current pulse applied to the glossopharyngeal nerve with a microsuction electrode, and then recorded simultaneously from many loci in the objective two-dimensional image plane of a compound microscope. In addition to the multiple-site optical recording technique, we tried to introduce an optical sectioning method by changing the focal plane of the microscope to obtain three-dimensional information. Thus, we have been able to assess semiquantitatively the three-dimensional profiles of two glossopharyngeal response areas corresponding to the nucleus of the glossopharyngeal nerve (nucleus nervi glossopharyngei) and the nucleus of the tractus solitarius. Furthermore, glutaminergic excitatory postsynaptic potentials were determined within the response area corresponding to the nucleus of the tractus solitarius. In addition, we also compared the glossopharyngeal and vagal response areas and found that the cores of the related nuclei are separated in three dimensions.

2-Amino-5-phosphonovalerate↗
PubMed1996

Children's analysis of hierarchical patterns: evidence from a similarity judgment task.

Three experiments in this study examined the development of young children's analysis of spatial patterns, specifically hierarchical letter and geometric forms. In a forced choice task, 4- and 6-year-olds and adult subjects chose one of two choice forms as most similar to a target form. Specific stimulus manipulations were introduced to assess children's ability to segment and integrate hierarchically organized information under different conditions. In Experiment 1 adults served as subjects in a computerized version that provided both choice and response latency data. In Experiments 2 and 3 children and adults participated in a pencil and paper version of the forced choice task. Results showed that although children as young as 4 years of age demonstrated substantial analytic competence, their ability to integrate the parts of the spatial array to form a coherent whole was weaker and more easily disrupted than that of the older children and adults.

Age Factors↗
PubMed1999

Patterns of gene flow inferred from genetic distances in the Mediterranean region.

The analysis of population structure may lead to inferences about demographic phenomena. In particular, regions of sharp genetic differentiation suggest the existence of factors that impaired gene flow and increased the evolutionary role of genetic drift. Here, we present an analysis of a data set of 10 allele frequencies in 39 populations of the Mediterranean region. As a preliminary step, we describe spatial patterns of allele frequencies using spatial autocorrelation analysis. We then construct a network connecting localities and estimate genetic distances along the edges of the network. By applying specific algorithms, we locate on the map the areas of sharpest genetic differentiation, or genetic boundaries. The main boundaries separate the northern and the southern coasts, especially in their western portions; in addition, several localities appear genetically isolated. The comparatively high genetic differentiation across the western Mediterranean, where the sea distances between localities are shorter, strongly suggests that the sea distance by itself can hardly be regarded as a major isolating factor among these populations. On the contrary, the decrease in genetic resemblance between populations of the 2 coasts as one proceeds westward may reflect an increased genetic exchange in the eastern Mediterranean basin or independent human dispersal along the 2 coasts or both.

Algorithms↗
PubMed1990

A spatial gradient of expression of a cAMP-regulated prespore cell-type-specific gene in Dictyostelium.

Previously, we identified a class of genes in Dictyostelium that are prespore cell-type specific in their expression in the multicellular aggregate and are inducible by cAMP acting through cell-surface cAMP receptors. In this paper, we report the cloning and analysis of the regulatory regions controlling the expression of one such gene that encodes a spore coat protein, SP60. By use of a fusion of the firefly luciferase gene and Escherichia coli lacZ [expresses beta-galactosidase (beta-gal)], we have identified cis-acting regions required for proper spatial and temporal expression in multicellular aggregates and for cAMP induction in shaking cell culture. Deletion analysis suggests that a CA-rich element (CAE) and surrounding sequences present three times within the 5'-flanking sequence are required for proper regulation. SP60-lacZ fusions that include all three of these regions express lacZ only in the posterior approximately 85% of migrating slugs (prespore zone). Studies show that SP60 is expressed during mid to late aggregation, and SP60-lacZ-positive cells are spatially localized as a doughnut-shaped ring within the forming aggregate. Cells within the skirt that surrounds the aggregate and that are still migrating into the aggregate do not stain. Sequential 5' deletions of CAEs and surrounding regions affect the expression level of SP60-luciferase in response to developmental signals and cAMP, as well as the spatial pattern of SP60-lacZ. Deletion of the first (most 5') of these regions restricts the spatial expression of SP60-lacZ fusions to the anterior of the prespore zone. When both the first and second regions are removed, the expression level drops, and the staining is restricted to the prespore/prestalk boundary. Furthermore, the staining pattern that is seen with these two deletions is present as a gradient from anterior to posterior within the prespore zone. Deletion of all three regions results in a loss of both cAMP and developmentally induced expression. These results suggest the presence of a gradient within the prespore zone that differentially affects the activity of promoters containing different numbers of response elements.

Amino Acid Sequence↗
PubMed1995

Landscape ecology of arboviruses in southern California: patterns in the epizootic dissemination of western equine encephalomyelitis and St. Louis encephalitis viruses in Coachella Valley, 1991-1992.

Temporal and spatial patterns in the initiation and dissemination of western equine encephalomyelitis and St. Louis encephalitis virus activity in Coachella Valley during 1991 and 1992 were detected by testing pools of host-seeking Culex tarsalis Coquillett for virus infection and sentinel chickens for seroconversions. Both viruses repeatedly were detected first at a salt marsh adjacent to the Salton Sea in the southeastern corner of the study area and then disseminated to the northwest to freshwater marsh, agricultural, and residential habitats. Virus dissemination was relatively slow (< 1 km/d) and may have been accomplished by dispersive host-seeking mosquitoes. Repeated early-season recovery of virus activity indicated that both viruses may persist interseasonally in salt marsh habitat.

Animals↗
PubMed1996

Comparison of human cerebral activation pattern during cutaneous warmth, heat pain, and deep cold pain.

1. We wished to determine whether there are differences in the spatial pattern and intensity of synaptic activity within the conscious human forebrain when different forms and intensities of innocuous and noxious thermal stimuli are experienced. Accordingly, positron emission tomography (PET) with intravenous injection of H2(15)O was used to detect increases in regional cerebral blood flow (rCBF) in normal humans as they discriminated differences in the intensity of noxious and innocuous thermal stimulation applied to the nondominant (left) arm. After stereotactic registration, subtraction images were formed from each subject by subtracting counts of emissions obtained during lower-intensity stimulation from those obtained during stimulation at higher intensities. A statistical summation analysis (Z score) of individual voxels was performed. In addition, volumes of interest were chosen on the basis of a priori hypotheses and the results of previously published PET studies. In both types of analysis, statistical thresholds were established with corrections for multiple comparisons. 2. Twenty-seven subjects were divided into three groups of nine subjects each for the three phases of this investigation. For studies in which repetitive contact heat stimuli were used, each subject was instructed in magnitude estimation on the basis of a scale for which 0 indicated "no heat sensation," 7 "just barely painful," and 10 "just barely tolerable." For the study of pain elicited by immersion of the hand in cold water, subjects were instructed to use a scale in which 0 represented "no pain" and 10 represented just barely tolerable pain. 3. In the warm-discrimination study, two intensities of innocuous heat (36 and 43 degrees C) were applied with a thermode as repetitive 5-s contacts to the volar forearm for a total of approximately 100 s, 8 stimuli before and 12 during each scan. Each temperature was applied on alternate scans for a total of four scans per subject. Neither stimulus was rated painful. All subjects discriminated the 43 degrees C stimulus (average rating 5.90 +/- 1.43, mean +/- SD) from the 36 degrees C stimulus (1.96 +/- 1.08, mean +/- SD; t = 13.19, P < 0.0001). Significant increases in rCBF to the 43 degrees C stimuli were found in the contralateral ventral posterior thalamus, lenticular nucleus, medial prefrontal cortex (Brodmann's areas 10 and 32), and cerebellar vermis. 4. The procedure for discriminating between noxious and innocuous heat stimuli was identical to that used for warm discrimination except that the stimulation temperatures were 40 and 50 degrees C. All subjects rated the 50 degrees C stimuli as painful (average rating 8.9 +/- 0.9, mean +/- SD) and the 40 degrees C stimuli as warm, but not painful (2.1 +/- 1.0). Significant rCBF increases to 50 degrees C stimuli were found contralaterally in the thalamus, anterior cingulate cortex, premotor cortex, and secondary somatosensory (S2) and posterior insular cortices. Significant activity also appeared within the region of the contralateral anterior insula and lenticular nucleus. The ipsilateral premotor cortex and thalamus, and the medial dorsal midbrain and cerebellar vermis, also showed significant rCBF increases. Cerebral blood flow (CBF) increases just below the threshold for statistical significance were seen in the contralateral sensorimotor cortex [primary motor cortex (M1)/primary somatosensory cortex (S1)]. 5. For discrimination between tonic innocuous cold and tonic cold pain, the left hand was immersed to the wrist, throughout each of six scans, in water kept at an average temperature of either 20.5 +/- 1.15 degrees C (mean +/- SD) or 6.02 +/- 1.18 degrees C (mean +/- SD) on alternate scans. All subjects rated the intensity of the stimuli on a scale in which 0 indicated no pain and 10 represented barely tolerable pain. Subjects rated the 20 degrees C water immersion as painless (average rating 0.18 +/- 0.48, mean +/- SD), but gave ratings indicating i

Adolescent↗
PubMed2005

Phylogeographic breaks in low-dispersal species: the emergence of concordance across gene trees.

Computer simulations were used to investigate population conditions under which phylogeographic breaks in gene genealogies can be interpreted with confidence to infer the existence and location of historical barriers to gene flow in continuously distributed, low-dispersal species. We generated collections of haplotypic gene trees under a variety of demographic scenarios and analyzed them with regard to salient genealogical breaks in their spatial patterns. In the first part of the analysis, we estimated the frequency in which the spatial location of the deepest phylogeographic break between successive pairs of populations along a linear habitat coincided with a spatial physical barrier to dispersal. Results confirm previous reports that individual gene trees can show 'haphazard' phylogeographic discontinuities even in the absence of historical barriers to gene flow. In the second part of the analysis, we assessed the probability that pairs of gene genealogies from a set of population samples agree upon the location of a geographical barrier. Our findings extend earlier reports by demonstrating that spatially concordant phylogeographic breaks across ;ndependent neutral loci normally emerge only in the presence of longstanding historical barriers to gene flow. Genealogical concordance across multiple loci thus becomes a deciding criterion by which to distinguish between stochastic and deterministic causation in accounting for phylogeographic discontinuities in continuously distributed species.

Computer Simulation↗
PubMed2005

Remote sensing and spatial statistical analysis to predict the distribution of Oncomelania hupensis in the marshlands of China.

Remote sensing and spatial statistical analysis were employed to predict the distribution of Oncomelania hupensis, the intermediate host snail of Schistosoma japonicum, in the marshlands of Jiangning county in China. Surrogate indices related to environmental factors in the marshlands were derived from a Landsat 7 ETM+ image, and the relationship between environmental covariates and the density of O. hupensis was analyzed by stepwise regression models and ordinary kriging. Although stepwise regression demonstrated that O. hupensis densities of live snails in the marshlands related significantly to the modified soil-adjusted vegetation index, wetness and land surface temperature, the correlation coefficient was low (0.282). Therefore, spatial patterns of the regression residual were investigated by the semi-variogram method, and the spatial variation of O. hupensis density attributed to the spatial autocorrelation was estimated by ordinary kriging. The regression model of the snail density and ordinary kriging of its spatial variation were then combined with the aim of improving the prediction of O. hupensis. Following this approach, the prediction indeed improved considerably (0.852). Our results show that it is possible to predict the distribution of O. hupensis in these marshlands by using remotely sensed environmental indices, and that spatial statistical analyses are capable of improving prediction accuracy. These findings are of relevance for mapping and prediction of schistosomiasis japonica in China, and hence the national control programme.

Animals↗