Search PubMed⌕ Search

SEARCH · Search PubMed

Results for “intercept”

Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,297 records · Page 72Linked to original sources
PubMed1986

Stochastic modelling of a single ion channel: interdependence of burst length and number of openings per burst.

Previous modelling of single channel behaviour based on Markov processes has been concerned mainly with means and marginal distributions of particular quantities. The present study derives the joint distribution, conditional distributions, and associated mean values for the burst length (T) and the number (N) of openings per burst in two simple three-state models in which bursting is possible, one for an agonist-only and one for a channel blocking mechanism. In both models the conditional mean burst length (E(T/N = r)) increases linearly as a function of the number of openings per burst, while the conditional mean number of openings per burst (E(N/T = x)) is a nonlinear strictly increasing function of burst length, which is asymptotically linear for large burst length. The asymptotic intercept for each model is shown to be less than, equal to, or greater than unity according as mean channel closed-time is less than, equal to, or greater than mean open-time. For parameter values typical of the nicotinic receptor, this intercept is less than unity for the agonist-only model and greater than unity for the blocking model. As a result of the dependence between the number of openings per burst and burst length, it is shown that experimental estimates of the unconditional mean number of openings per burst may be biased if bursts of only short duration are collected.

Animals↗
PubMed2001

Traveling-wave tubes and backward-wave oscillators with weak external magnetic fields.

Recent development of plasma-assisted slow-wave oscillators [Goebel et al. IEEE Trans. Plasma Sci. 22, 547 (1994)], microwave sources that operate without guiding magnetic fields, has stimulated interest in the theoretical analysis of such tubes. In principle, in the absence of guiding magnetic fields, due to the space charge forces and the radial electric field of the wave, the electrons may propagate radially outward which increases electron coupling to the slow wave whose field is localized near the slow-wave structure (SWS). This increases the wave growth rate and efficiency, and hence allows one to shorten the interaction region. So the radial electron motion can be beneficial for operation if it does not lead to interception of electrons by the SWS. To avoid this interception a weak external magnetic field can be applied. The theory developed describes the effect of weak magnetic fields on the operation of traveling-wave tubes and backward-wave oscillators with electrons moving not only axially but also transversely. This theory allows one to estimate the magnetic field required for protecting the SWS from electron bombardment at different power levels. Theoretical predictions of the efficiency enhancement due to the weak magnetic field are confirmed in experiments.

Journal Article↗
PubMed2002

Predator-prey encounters in turbulent waters.

With reference to studies of predator-prey encounters in turbulent waters, we demonstrate the feasibility of an experimental method for investigations of particle fluxes to an absorbing surface in turbulent flows. A laboratory experiment is carried out, where an approximately homogeneous and isotropic turbulent flow is generated by two moving grids. The simultaneous trajectories of many small neutrally buoyant polystyrene particles are followed in time. Selecting one of these to represent a predator, while the others are considered as prey, we obtain estimates for the time variation of the statistical average of the prey flux into a suitably defined "sphere of interception." The variation of this flux with the radius in the sphere of interception, as well as the variation with basic flow parameters is well described by a simple model, in particular for radii smaller than a characteristic length scale for the turbulence. Also the Eulerian counterpart of the problem has been analyzed, and the particle fluxes from the two studies compared.

Journal Article↗
PubMed2006

Dynamics of fluctuation-dominated phase ordering: hard-core passive sliders on a fluctuating surface.

We study the dynamics of a system of hard-core particles sliding downwards on a one-dimensional fluctuating interface, which in a special case can be mapped to the problem of a passive scalar advected by a Burgers fluid. Driven by the surface fluctuations, the particles show a tendency to cluster, but the hard-core interaction prevents collapse. We use numerical simulations to measure the autocorrelation function in steady state and in the aging regime, and space-time correlation functions in steady state. We have also calculated these quantities analytically in a related surface model. The steady-state autocorrelation is a scaling function of t/L(z), where L is the system size and z is the dynamic exponent. Starting from a finite intercept, the scaling function decays with a cusp, in the small argument limit. The finite value of the intercept indicates the existence of long-range order in the system. The space-time correlation, which is a function of r/L and t/L(z), is nonmonotonic in t for fixed r. The aging autocorrelation is a scaling function of t(1) and t(2) where t(1) is the waiting time and t(2) is the time difference. This scaling function decays as a power law for t(2)>>t(1); for t(1)>>t(2), it decays with a cusp as in steady state. To reconcile the occurrence of strong fluctuations in the steady state with the fact of an ordered state, we measured the distribution function of the length of the largest cluster. This shows that fluctuations never destroy ordering, but rather the system meanders from one ordered configuration to another on a relatively rapid time scale.

Journal Article↗
PubMed2006

Linear relation on the correlation in complex networks.

Correlation in complex networks follows a linear relation between the degree of a node and the total degrees of its neighbors for six different classes of real networks. This general linear relation is an extension of the Aboav-Weaire law in two-dimensional cellular structures and provides a simple and different perspective on the correlation in complex networks, which is complementary to an existing description using Pearson correlation coefficients and a power law fit. Analytical expression for this linear relation for three standard models of complex networks: the Erdos-Renyi, Watts-Strogatz, and Barabasi-Albert networks is provided. The slope and intercept of this linear relation are described by a single parameter a together with the first and second moment of the degree distribution of the network. The assortivity of the network can be related to the sign of the intercept.

Journal Article↗
PubMed1994

Purification and Characterization of Acetyl-Coenzyme A Carboxylase from Diclofop-Resistant and -Susceptible Lolium multiflorum.

Acetyl-coenzyme A carboxylase (ACCase) was purified >100-fold (specific activity 3.5 units mg-1) from leaf tissue of diclofopresistant and -susceptible biotypes of Lolium multiflorum. As determined by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, the purified fractions from both biotypes contained a single 206-kD biotinylated polypeptide. The molecular mass of the native enzyme from both biotypes was approximately 520 kD. In some cases the native dimer from both biotypes dissociated during gel filtration to form a subunit of approximately 224 kD. The inclusion of 5% (w/v) polyethylene glycol 3350 (PEG) in the elution buffer prevented this dissociation. Steady-state substrate kinetics were analyzed in both the presence and absence of 5% PEG. For ACCase from both biotypes, addition of PEG increased the velocity 22% and decreased the apparent Km values for acetyl-coenzyme A (acetyl-CoA), but increased the Km values for bicarbonate and ATP. In the presence of PEG, the Km values for bicarbonate and ATP were approximately 35% higher for the enzyme from the susceptible biotype compared with the resistant enzyme. In the absence of PEG, no differences in apparent Km values were observed for the enzymes from the two biotypes. Inhibition constants (Ki app) were determined for CoA, malonyl-CoA, and diclofop. CoA was an S-hyperbolic (slope replots)-I-hyperbolic (intercept replots) noncompetitive inhibitor with respect to acetyl-CoA, with Ki app values of 711 and 795 [mu]M for enzymes from the resistant and susceptible biotypes, respectively. Malonyl-CoA competitively inhibited both enzymes (versus acetyl-CoA) with Ki app values of 140 and 104 [mu]M for ACCase from resistant and susceptible biotypes, respectively. Diclofop was a linear noncompetitive inhibitor of ACCase from the susceptible biotype and a nonlinear, or S-hyperbolic-I-hyperbolic, noncompetitive inhibitor of ACCase from the resistant biotype. For ACCase from the susceptible biotype the slope (Kis) and intercept (Kii) inhibition constants for diclofop versus acetyl-CoA were 0.08 and 0.44 [mu]M, respectively. ACCase from the resistant biotype had a Ki app value of 6.5 [mu]M. At a subsaturating acetyl-CoA concentration of 50 [mu]M, the Hill coefficients for diclofop binding were 0.61 and 1.2 for ACCase from the resistant and susceptible biotypes, respectively. The Hill coefficients for diclofop binding and the inhibitor replots suggest that the resistant form of ACCase exhibits negative cooperativity in binding diclofop. However, the possibility that the nonlinear inhibition of ACCase activity by diclofop in the enzyme fraction isolated from the resistant biotype is due to the presence of both resistant and susceptible forms of ACCase cannot be excluded.

Journal Article↗
PubMed1976

Genotypic variation in carboxylation of tomatoes.

The gas exchange characteristics of 24 genotypes of Lycopersicon esculentum Mill. and one of L. minutum were measured with an infrared gas analyzer and dew point hygrometer in an open system. Net carbon exchange (NCE) and transpiration rate were measured at 50, 100, 150, and 300 mu1 1(-1) CO(2), and a regression of NCE versus internal lead [CO(2)] estimates was calculated. The slope of the regression curve at the CO(2) compensation point was used as the measure of carboxylation efficiency (CE). Significant genotypic differences for CE were obtained. Differences in CE did not appear to be due to differences in diffusive resistance defined as the sum of the boundary layer resistance (r(a)) and the stomatal plus cuticular resistance (r(1)). There was no correlation (r = -0.07) between (r(a) + r(1)) and CE. Within groups with nonsignificantly different means for (r(a) + r(1)) there were genotypes with extremes for CE.The zero CO(2) intercept has been used as an indication of photorespiration. Application of this method revealed a strong inverse relationship between CE and the intercept value, indicating either that photorespiration is related directly to CE or that this method is unreliable for estimating photorespiration. The fact that the variation in CE occurs at light saturation suggests that the observed differences in CE and rates of NCE are determined either by: (a) the concentration and/or kinetic properties of the photochemical reaction centers and associated electron transfer components as they affect the supply of NADPH and ATP and consequently the levels of Calvin cycle intermediates; or (b) the concentration and/or kinetic properties of ribulose 1,5-diphosphate carboxylase.

Journal Article↗
PubMed1986

Canopy photosynthesis and its relationship to plant productivity in near-isogenic cotton lines differing in leaf morphology.

A 2-year study was conducted to determine the relationships between plant canopy photosynthesis, canopy light interception, and plant productivity of cotton (Gossypium hirsutum L.) exhibiting differing leaf morphologies. The near-isogenic lines were from a single background (MD 65-11) and represented the leaf shapes Normal (small leaf lobing), Sub-Okra (intermediate leaf lobing), Okra (large leaf lobing), and Super Okra (severe leaf lobing). The F(1) of a cross Normal x Okra (intermediate leaf lobing) and the F(2) (segregating 1:2:1 for Normal Sub-Okra, and Okra, respectively) were also grown. Reduced plant canopies were produced by Okra and Super Okra lines, which translated into increased light penetration to the ground, and hence, in reduced canopy photosynthesis. Integrated canopy photosynthesis (ICAP) was significantly associated with light interception by the plant canopy. Part of the remaining variability in ICAP was associated with confounding factors associated with plant maturity and other unmeasured genotypic factors. Intermediate (F(1) and Sub-Okra) and normal leaf types displayed the largest ICAP values in both years. Lint production was positively related to ICAP (R(2) = 0.53). The combination of high ICAP values and competitive lint yields indicate that intermediate lobed leaf morphologies offer promise as productive sources of physiological variation for cotton germplasm development.

Journal Article↗
PubMed1989

Whole Plant and Leaf Steady State Gas Exchange during Ethylene Exposure in Xanthium strumarium L.

The effects of ethylene evolved from ethephon on leaf and whole plant photosynthesis in Xanthium strumarium L. were examined. Ethylene-induced epinasty reduced light interception by the leaves of ethephon treated plants by up to 60%. Gas exchange values of individual, attached leaves under identical assay conditions were not inhibited even after 36 hours of ethylene exposure, although treated leaves required a longer induction period to achieve steady state photosynthesis. The speed of translocation of recently fixed (11)C-assimilate movement was not seriously impaired following ethephon treatment; however, a greater proportion of the assimilate was partitioned downward toward the roots. Within 24 hours of ethephon treatment, the whole plant net carbon exchange rate expressed on a per plant basis or a leaf area basis had dropped by 35%. The apparent inhibition of net carbon exchange rate was reversed by physically repositioning the leaves with respect to the light source. Ethylene exposure also inhibited expansion of young leaves which was partially reversed when the leaves were repositioned. The data indicated that ethylene indirectly affected net C gain and plant growth through modification of light interception and altered sink demand without directly inhibiting leaf photosynthesis.

Journal Article↗
PubMed1997

The inaccuracy of Kubicek's one-cylinder model in thoracic impedance cardiography.

The validity of a one- and a two-cylinder model, underlying thoracic impedance cardiography (TIC), was investigated by studying the length dependence of the impedance parameters Z0, (dZ/dt)min, and stroke volume (SV). It can be shown that, within a one-cylinder model, all parameters are directly proportional to the length, whereas, if the volume conduction of the thorax and the neck are modeled separately, Z0 and (dZ/dt)min are expected to be linear dependent and SV will be nonlinear upon the length. The expectations were compared to results from in vivo measurements. Two electrode arrays were studied, in which the caudal recording electrode position was varied; SV was calculated using Kubicek's equation. Except for small distances, the results showed a nearly linear relation between the parameters and the length. Regression analysis of the linear part revealed statistically significant intercepts (p < 0.05). Neither the intercept nor the nonlinear part can be explained by a one-cylinder model, whereas a model consisting of two cylinders serially connected describes the experimental results accurately. Thus SV estimation based on a one-cylinder model is biased due to the invalid one-cylinder model. Corrections for the Kubicek-equation need to be developed in future research using this two-cylinder model.

Adult↗
PubMed1998

EEG-based communication: improved accuracy by response verification.

Humans can learn to control the amplitude of electroencephalographic (EEG) activity in specific frequency bands over sensorimotor cortex and use it to move a cursor to a target on a computer screen. EEG-based communication could provide a new augmentative communication channel for individuals with motor disabilities. In the present system, each dimension of cursor movement is controlled by a linear equation. While the intercept in the equation is continually updated, it does not perfectly eliminate the impact of spontaneous variations in EEG amplitude. This imperfection reduces the accuracy of cursor movement. We evaluated a response verification (RV) procedure in which each outcome is determined by two opposite trials (e.g., one top-target trial and one bottom-target trial). Success, or failure, on both is required for a definitive outcome. The RV procedure reduces errors due to imperfection in intercept selection. Accuracy for opposite-trial pairs exceeds that predicted from the accuracies of individual trials, and greatly exceeds that for same-trial pairs. The RV procedure should be particularly valuable when the first trial has >2 possible targets, because the second trial need only confirm or deny the outcome of the first, and it should be applicable to nonlinear as well as to linear algorithms.

Adult↗
PubMed2000

The centercept: an estimable and meaningful regression parameter.

Linear regression is a mathematical model that is employed broadly throughout all of social science research. The choice of parameterization for linear models has important substantive and statistical implications. This article examines the typical parameterization chosen, which includes a parameter for slope and a parameter for the y-intercept. The article demonstrates that the centercept has an interpretive advantage over the traditionally used y-intercept and that the centercept is typically estimated more accurately.

Humans↗
PubMed2004

Marginalized binary mixed-effects models with covariate-dependent random effects and likelihood inference.

Marginal models and conditional mixed-effects models are commonly used for clustered binary data. However, regression parameters and predictions in nonlinear mixed-effects models usually do not have a direct marginal interpretation, because the conditional functional form does not carry over to the margin. Because both marginal and conditional inferences are of interest, a unified approach is attractive. To this end, we investigate a parameterization of generalized linear mixed models with a structured random-intercept distribution that matches the conditional and marginal shapes. We model the marginal mean of response distribution and select the distribution of the random intercept to produce the match and also to model covariate-dependent random effects. We discuss the relation between this approach and some existing models and compare the approaches on two datasets.

Air Pollution↗
PubMed2000

Differing selection in alternative competitive environments: shade-avoidance responses and germination timing.

Under competitive conditions, stem elongation in plants is thought to enhance fitness by increasing light interception. However, the onset of competition should vary with the species of competitor due to interspecific differences in timing of emergence and plant growth form. The fitness benefits of elongation may therefore depend on the timing of this plastic response. Phenotypic selection analyses and path analysis were used to evaluate selection acting on stem elongation at early and late life-history stages and the combination of germination timing and elongation in an annual plant. Velvetleaf (Abutilon theophrasti) were raised in one of three environments experienced by natural populations (cornfields; soybean fields; and disturbed, weedy sites). Due to the rapid growth rate and high density of plants in disturbed areas, selection to increase seedling-stage elongation was expected in weedy sites. Due to the wide spacing of crop plants, competition for light is initially low in cultivated fields, but intensifies as the season progresses. Selection for increased elongation at later nodes was expected in soybean fields because velvetleaf can often overtop soy and thereby increase leaf exposure. In contrast, selection against late elongation was expected in cornfields because velvetleaf are incapable of overtopping corn. Individuals that elongate would experience the carbon cost of allocating to structural tissue, but fail to experience a carbon return through increased light interception. The phenotypic selection analyses were consistent with these predictions and therefore support the role of stem elongation as an adaptation to interspecific competition. Selection also acted on the combination of germination timing and elongation. In the weedy environment, early emergence in conjunction with enhanced stem elongation conveyed the highest fitness. Reduced elongation was favored among individuals that emerged late, potentially because these individuals were unable to overtop neighbors. The results of this study demonstrate that the timing of stem elongation strongly affects competitive success. Environments that differ in the timing of competition for light select for elongation at different life-history stages, and this selection depends on the timing of emergence.

Biological Evolution↗
PubMed2001

The evolution of trade-offs: effects of inbreeding on fecundity relationships in the cricket Gryllus firmus.

The evolution of traits is modulated by their interrelationships with each other, particularly when those relationships result in a fitness trade-off. In this paper we explore the consequences of genetic architecture on functional relationships between traits. Specifically, we address the consequences of inbreeding on these relationships. We show that the linear regression between two traits will not be affected if there is no dominance genetic variance in either trait, whereas the intercept but not the slope of the regression will change if there is dominance genetic variance in one trait only. We test the latter hypothesis using fecundity relationships in the cricket Gryllus firmus. Data from pedigree analysis and an inbreeding experiment show that there is significant dominance genetic variance in fecundity, but not head width (an index of body size) or dorsal longitudinal muscle (DLM) mass. Fecundity increases with head width, but decreases with DLM mass. As predicted, the intercepts of the regressions of fecundity on these two morphological traits decrease with inbreeding, but there is little or no change in slope. Gryllus firmus is wing dimorphic, with the macropterous (LW) morph having a lower fecundity than the micropterous (SW) morph. We hypothesize that the difference in fecundity arises primarily because of a competition for resources in the LW females between DLM maintenance (i.e., mass) and egg production. As a consequence, we predict that the fecundity within each morph should decline linearly with the inbreeding coefficient at the same rate in both morphs. The result of this will be a change in the relative fitness of the two morphs, that of the SW morph increasing with inbreeding. This prediction is supported. These results indicate that trade-offs will evolve and such changes will affect evolutionary trajectories by altering the pattern of relationships among fitness components.

Animals↗
PubMed2005

Amotosalen photochemical inactivation of severe acute respiratory syndrome coronavirus in human platelet concentrates.

A novel human coronavirus causing severe acute respiratory syndrome (SARS) emerged in epidemic form in early 2003 in China and spread worldwide in a few months. Every newly emerging human pathogen is of concern for the safety of the blood supply during and after an epidemic crisis. For this purpose, we have evaluated the inactivation of SARS-coronavirus (CoV) in platelet concentrates using an approved pathogen inactivation device, the INTERCEPT Blood System. Apheresis platelet concentrates (APCs) were inoculated with approximately 10(6) pfu mL(-1) of either Urbani or HSR1 isolates of SARS-CoV. The inoculated units were mixed with 150 microm amotosalen and illuminated with 3 J cm(-2) UV-A light. The viral titres were determined by plaque formation in Vero E6 cells. Mixing SARS-CoV with APC in the absence of any treatment decreased viral infectivity by approximately 0.5-1 log10. Following photochemical treatment, SARS-CoV was consistently inactivated to the limit of detection in seven independent APC units. No infectious virus was detected after treatment when up to one-third of the APC unit was assayed, demonstrating a mean log10-reduction of >6.2. Potent inactivation of SARS-CoV therefore extends the capability of the INTERCEPT Blood System in inactivating a broad spectrum of human pathogens including recently emerging respiratory viruses.

Blood Platelets↗
PubMed1984

A study of the efficiency of four blood microfilters.

A new blood microfilter, Swank 6000-4, was compared with three established blood microfilters, Pall SQ40S, Fenwal 4C2423 and Intercept HR 18137-00 (1321). The flow rate decreased with increasing volume of filtered blood with all the microfilters (p less than 0.01). When the flow rates through each type of microfilter were compared there was no significant difference between them. Screen filtration pressure was restored to normal by the Swank, Fenwal and Intercept microfilters, but remained higher after filtration through the Pall microfilter (p less than 0.01). There was no evidence of red cell loss or damage with any of the microfilters after filtration.

Blood↗
PubMed2006

Application of random effects to the study of resource selection by animals.

1. Resource selection estimated by logistic regression is used increasingly in studies to identify critical resources for animal populations and to predict species occurrence. 2. Most frequently, individual animals are monitored and pooled to estimate population-level effects without regard to group or individual-level variation. Pooling assumes that both observations and their errors are independent, and resource selection is constant given individual variation in resource availability. 3. Although researchers have identified ways to minimize autocorrelation, variation between individuals caused by differences in selection or available resources, including functional responses in resource selection, have not been well addressed. 4. Here we review random-effects models and their application to resource selection modelling to overcome these common limitations. We present a simple case study of an analysis of resource selection by grizzly bears in the foothills of the Canadian Rocky Mountains with and without random effects. 5. Both categorical and continuous variables in the grizzly bear model differed in interpretation, both in statistical significance and coefficient sign, depending on how a random effect was included. We used a simulation approach to clarify the application of random effects under three common situations for telemetry studies: (a) discrepancies in sample sizes among individuals; (b) differences among individuals in selection where availability is constant; and (c) differences in availability with and without a functional response in resource selection. 6. We found that random intercepts accounted for unbalanced sample designs, and models with random intercepts and coefficients improved model fit given the variation in selection among individuals and functional responses in selection. Our empirical example and simulations demonstrate how including random effects in resource selection models can aid interpretation and address difficult assumptions limiting their generality. This approach will allow researchers to appropriately estimate marginal (population) and conditional (individual) responses, and account for complex grouping, unbalanced sample designs and autocorrelation.

Animals↗