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Regime, phase and paradigm shifts: making community ecology the basic science for fisheries.

Modern fishery science, which began in 1957 with Beverton and Holt, is ca. 50 years old. At its inception, fishery science was limited by a nineteenth century mechanistic worldview and by computational technology; thus, the relatively simple equations of population ecology became the fundamental ecological science underlying fisheries. The time has come for this to change and for community ecology to become the fundamental ecological science underlying fisheries. This point will be illustrated with two examples. First, when viewed from a community perspective, excess production must be considered in the context of biomass left for predators. We argue that this is a better measure of the effects of fisheries than spawning biomass per recruit. Second, we shall analyse a simple, but still multi-species, model for fishery management that considers the alternatives of harvest regulations, inshore marine protected areas and offshore marine protected areas. Population or community perspectives lead to very different predictions about the efficacy of reserves.

Animals↗

[Computerized instruction. Preliminary analysis of the experience at the Institute of Radiological Sciences of the University of Milan].

Computerised instruction means teaching by computer using a program that alternates information with self-checking multiple choice questions. This system was used to create a fully computerized lesson on the diagnosis and treatment of breast cancer which was then tested on a small group of medical students attending the Radiology School of the Milan University Institute of Radiological Sciences. At the end of the test, the students were asked to complete a questionnaire which was then analysed. The computer lesson consisted of 66 text messages and 21 self-checking questions. It aroused considerable interest, though the most common reason was curiosity about a novel system. The degree of fatigue caused was modest despite the fact that the computer lesson was at least as demanding as a traditional lesion, if not more so. The level of learning was considered high and optimised by the use of self-checking questions that were considered an essential element. However no student agreed to sit an official examination, even interactively, using the computer.

Computer-Assisted Instruction↗

A history of computers and computerized imaging.

The computers has revolutionized diagnostic imaging, making possible techniques such as computed tomography, magnetic resonance imaging, sonography and computed radiography. This article traces the historical development of computers and demonstrates how their brief association with the radiologic sciences has transformed diagnostic medicine.

Computers↗

Needs for computing facilities in anesthesiology.

The use of computers in the practice of anesthesiology appears to be very promising--therefore the time has come to reflect on ways to utilize the possibilities of computers in this field. The anesthesiologist is faced with an existing "medical information science" and system developments and must now address these questions: How do computers fit in these systems? What is the kind of support and help one can expect from the use of computers? Next one attempts to define the needs for computer support, taking into account the specific working conditions of various anesthesia teams. A description is made of how a system for medical information is automatized--and by way of an example--how such a computer system for anesthesiologists is linked to a larger regional facility. Advantages and disadvantages of such a system are discussed.

Anesthesia Department, Hospital↗

EPISCOPE: computer programs in veterinary epidemiology.

Veterinary epidemiology is a rapidly developing science. However, many veterinarians are unfamiliar with the relevant techniques because veterinary schools have not introduced biostatistics as a core element of their courses or adopted epidemiology as a specific discipline. EPISCOPE, the computer software presented in this paper, covers many epidemiological principles and calculations. It can assist both the teaching of epidemiology and the analysis of field data.

Animal Diseases↗

Towards the computerized animal house: the Newcastle University Animal House Management System.

A suite of computer programs (available from the Laboratory Animal Science Association) has been written to carry out much of the routine administration of a central animal house facility. Principal functions include stock control and accounting. The programs are fully portable and can be implemented on almost any microcomputer. They are protected against data-entry errors and can be used by staff who have little or no computer experience. In 10 months' use at the Comparative Biology Centre, the Newcastle University Animal House Management System has become an indispensable management tool. The system has also been successfully implemented at Bath University.

Accounting↗

Knowledge and use of electronic information resources by medical sciences faculty at The University of the West Indies.

OBJECTIVE: The objective was to determine faculty's knowledge of electronic resources, access to a computer, use of electronic resources (both number and frequency) available at the Medical Sciences Library (MSL), and the areas of training needed and to identify areas for further research. METHODS: A survey was administered to faculty in medicine, pharmacy, dentistry, and veterinary sciences at The University of the West Indies. The questions covered computer literacy, computer access and location, knowledge and use of electronic resources, and training needs. RESULTS: The response rate was 70%, of whom 97% were computer users. Seventy-three percent used computers daily, and 82% felt that their computer literacy level was average or beyond. Overall, it was found that faculty had high awareness of the electronic resources made available by the MSL but low use of MSL-specific resources supporting the suggested problem of underutilization. Many respondents felt that e-resources were important, and, though many felt that they were competent users, 83% were self-taught and many still expressed a need for training. Over 60% felt that a workshop with a hands-on component was the preferred format for training. It was recommended that there be greater promotion of the library's e-resources.

Attitude to Computers↗

Medical informatics and the science of cognition.

Recent developments in medical informatics research have afforded possibilities for great advances in health care delivery. These exciting opportunities also present formidable challenges to the implementation and integration of technologies in the workplace. As in most domains, there is a gulf between technologic artifacts and end users. Since medical practice is a human endeavor, there is a need for bridging disciplines to enable clinicians to benefit from rapid technologic advances. This is turn necessitates a broadening of disciplinary boundaries to consider cognitive and social factors pertaining to the design and use of technology. The authors argue for a place of prominence for cognitive science. Cognitive science provides a framework for the analysis and modeling of complex human performance and has considerable applicability to a range of issues in informatics. Its methods have been employed to illuminate different facets of design and implementation. This approach has also yielded insights into the mechanisms and processes involved in collaborative design. Cognitive scientific methods and theories are illustrated in the context of two examples that examine human-computer interaction in medical contexts and computer-mediated collaborative processes. The framework outlined in this paper can be used to refine the process of iterative design, end-user training, and productive practice.

Cognitive Science↗

Dissecting the computational architecture of social inference mechanisms.

Scientists have been dissecting the neural architecture of the human mind for several centuries. Dissecting its computational architecture has proven more difficult, however. Within the cognitive sciences, for example, there is a debate about the extent to which human reasoning is generated by computational machinery that is domain specific and functionally specialized. While some claim that the same set of cognitive processes accounts for reasoning across all domains (e.g. Rips 1994, Johnson-Laird & Byrne 1991), others argue that reasoning is generated by several different mechanisms, each designed to operate over a different class of content (e.g. Baron-Cohen 1995, Cheng & Holyoak 1985, Cosmides & Tooby 1992, Leslie 1987). Indeed, it has recently been proposed that the human cognitive architecture contains a faculty of social cognition; a suite of integrated mechanisms, each of which is specialized for reasoning and making decisions about a different aspect of the social world. Candidate devices include a theory of mind mechanism, an eye direction detector, social contract algorithms, permission schemas, obligation schemas, precaution rules, threat detection procedures and others (e.g. Baron-Cohen 1995, Cheng & Holyoak 1985, Cosmides 1985, 1989, Cosmides & Tooby 1989, 1992, 1994, Fiddick et al 1995, Fiske 1991, Jackendoff 1992, Leslie 1987, K. Manktelow & D. Over, unpublished paper, 1st Int Conf on Thinking, Plymouth, UK 1988, Manktelow & Over 1990, M.Rutherford, J. Tooby, L. Cosmides, unpublished paper, 8th Annual Meeting Human Behav Evol Society, Northwestern Univ, IL 1996, J. Tooby & L. Cosmides, unpublished paper, 2nd Annual Meeting Human Behav Evol Society, Evanston, IL 1989). To decide among these sometimes competing proposals, psychologists need empirical methods and theoretical standards that let us carve social inference mechanisms at the joints. We will argue that the theoretical standards needed are those of the 'adaptationist programme' developed in evolutionary biology. To show how these standards can be applied in dissecting the computational architecture of the human mind, we will discuss some recent empirical methods and results.

Adaptation, Psychological↗

The role of molecular modelling in biomedical research.

The synergy between experimental and computational biology has greatly benefited both fields, providing invaluable information in many different areas of the life sciences. This minireview will focus on one specific aspect of computational biology, molecular modelling, and describe a few examples highlighting the effectiveness of protein structural analysis and modelling in providing relevant information about systems of biomedical interest.

Antibodies, Monoclonal↗

Computational cell biologists snowed in at Cranwell.

Cell biology is being inundated by an avalanche of data from the genomics and proteomics enterprises. The complexity and sheer volume of information threaten to overwhelm the ability of traditional cell biologists to grasp its implications and develop experimentally testable hypotheses. For this reason, some have begun to explore computational approaches towards organizing complex data into quantitative models. This requires communication and collaboration between the biological science community and and the physical and mathematical sciences communities. A recent meeting [The First International Symposium on Computational Cell Biology, Cranwell Resort, Lenox, MA, USA; 4-6 March 2001. Organizers: J.H. Carson, A. Cowan, and L.M. Loew (www.nrcam.uchc.edu/conference).] made a first attempt to bring these two communities together. Three feet of new snow fell during the meeting, but the 125 attendees, an unusual mixture of cell biologists, computer scientists, mathematicians, physicists, and engineers, were having too much fun defining the new field of computational cell biology to notice that they were literally snowed in.

Animals↗

A generic model for the assessment of disease epidemiology: the computational basis of DisMod II.

Epidemiology as an empirical science has developed sophisticated methods to measure the causes and patterns of disease in populations. Nevertheless, for many diseases in many countries only partial data are available. When the partial data are insufficient, but data collection is not an option, it is possible to supplement the data by exploiting the causal relations between the various variables that describe a disease process. We present a simple generic disease model with incidence, one prevalent state, and case fatality and remission. We derive a set of equations that describes this disease process and allows calculation of the complete epidemiology of a disease given a minimum of three input variables. We give the example of asthma with age-specific prevalence, remission, and mortality as inputs. Outputs are incidence and case fatality, among others. The set of equations is embedded in a software package called 'DisMod II', which is made available to the public domain by the World Health Organization.

Journal Article↗

An introduction to interactive hypermedia.

Current computers can create and display documents that incorporate a variety of audiovisual media, and can be organized to allow the user, guided by curiosity and not by a fixed path through the material, to move through the information in non-linear pathways. These hypermedia documents and the concept of hypertext offer significant new possibilities for the creation of educational materials for the biomedical sciences. If the full capabilities of the computer are to be used to enhance the educational experience for learners, computer professionals need to collaborate with publishing and teaching professionals. Biomedical communications professionals can and should play a role in establishing and evaluating hypermedia documents for medical education.

Audiovisual Aids↗

The application of an Actel field programmable gate array in the design of an ECG RR interval recorder.

Field Programmable Gate Arrays (FPGAs) allow digital circuitry to be integrated on to a single device without the long time penalty incurred with mask programmable Application Specific Integrated Circuits (ASICs). This makes FPGA technology an attractive option to engineer involved in designing digital circuitry where space is at a premium. Furthermore, the relatively low cost of FPGAs at low volume, compared to mask programmable ASICs make them an excellent prototyping option for designers who are considering low cost volume production with mask programmable ASICs. There are several different types of FPGAs available which thus creates confusion for prospective users uncertain of their relative benefits. This paper serves as an introduction to FPGA technology and the stages involved in implementing a design, via the application of an Actel FPGA to the development of an ambulatory long term electrocardiogram (ECG) based RR interval recorder.

Biomedical Engineering↗

Introduction of a new laboratory test: an econometric approach with the use of neural network analysis.

We designed a simulation model for the assessment of the financial risks involved when a new diagnostic test is introduced in the laboratory. The model is based on a neural network consisting of ten neurons and assumes that input entities can have assigned appropriate uncertainty. Simulations are done on a 1-day interval basis. Risk analysis completes the model and the financial effects are evaluated for a selected time period. The basic output of the simulation consists of total expenses and income during the simulation time, net present value of the project at the end of simulation, total number of control samples during simulation, total number of patients evaluated and total number of used kits.

Chemistry, Clinical↗