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Chitinolytic bacteria of the mammal digestive tract.

Chitinolytic bacteria were isolated from the digestive tract of different mammals and characterized. All isolates were facultatively anaerobic, long Gram-positive, straight rods resembling Clostridium sp. Only one isolate consisted of Gram-positive ovoid cells. All cultures grew on glucose, N-acetylglucosamine, glucosamine, galactose, starch, hemicellulose and xylan. Fermentation products were mainly formate, acetate, butyrate and lactate. The isolates were identified as Clostridium sartagoforme (2 species), C. aminovalericum, C. bifermentans and Enterococcus durans (1 isolate of each species). Exocellular fractions of all strains exhibited higher activities of all enzymes than cellular ones. Inductive effects of hemicelluloses, pectin and laminarine on chitinases were demonstrated. High exocellular endochitinase activity was found in cultures grown on chitin. N-Acetylglucosaminidase activity was low with the exception of exocellular fractions of two strains of C. sartagoforme.

Animals↗

Complete mitochondrial genome of a neotropical fruit bat, Artibeus jamaicensis, and a new hypothesis of the relationships of bats to other eutherian mammals.

The complete mitochondrial genome was obtained from a microchiropteran bat, Artibeus jamaicensis. The presumptive amino acid sequence for the protein-coding genes was compared with predicted amino acid sequences from several representatives of other mammalian orders. Data were analyzed using maximum parsimony, maximum likelihood, and neighbor joining. All analyses placed bats as the sister group of carnivores, perissodactyls, artiodactyls, and cetaceans (e.g., 100% bootstrap value with both maximum parsimony and neighbor joining). The data strongly support a new hypothesis about the origin of bats, specifically a bat/ferungulate grouping. None of the analyses supported the superorder Archonta (bats, flying lemurs, primates, and tree shrews). Our hypothesis regarding the relationship of bats to other eutherian mammals is concordant with previous molecular studies and contrasts with hypotheses based solely on morphological criteria and an incomplete fossil record. The A. jamaicensis mitochondrial DNA control region has a complex pattern of tandem repeats that differs from previously reported chiropteran control regions.

Animals↗

Differential display analysis of gene expression in mammals: a p53 story.

Differential display is used worldwide as a method to identify changes in gene expression and to discover novel genes that are involved in important biological pathways. The principle of differential display is the systematic amplification of the 3' termini of messenger RNAs by using anchored oligo-dT primers in combination with upstream arbitrary primers. The separation of the polymerase chain reaction products by gel electrophoresis and their direct comparison allows the identification of differentially regulated genes. Recently, fluorescent differential display was established as the first nonradioactive differential display system with equivalent sensitivity to originally 33P isotopic labeling method. Because of its simplicity, sensitivity, reproducibility and automation, which increase the throughput and accuracy, differential display has become one of the most widely used gene-screening methods in biomedical research involving mammals. This chapter provides a glimpse of the application of differential display in search of target genes of the p53 tumor suppressor gene.

Animals↗

Enigmatic ungulate-like mammals from the Eocene of Central Asia.

A new mammal family, Olseniidae, is proposed based on a complete foot skeleton of cf. Olsenia sp. from the Eocene Toru Ajgyr locality in Kyrgyzstan and an astragalus of Olsenia mira from the Eocene Shara Murun locality in northern China. The new form cf. Olsenia sp. is an early ungulate that combines characteristics of mesonychids, perissodactyls and artiodactyls: tetradactyl and paraxonic foot, terminal phalanges claw-like but not fissured, astragalus with shallow proximal caput and without distal trochlea. This unique character set fills a gap in the fossil record and gives insights into the ungulate phylogeny, which is still not completely understood.

Animals↗

Asian gliriform origin for arctostylopid mammals.

Arctostylopids are common in Late Palaeocene and Early Eocene mammal faunas of Asia, but they are rare in North America. From the time of their first discovery, arctostylopids were grouped with the strictly endemic South American Notoungulata based on their strikingly similar dental morphology. This relationship was challenged based on dental morphology of more recently discovered arctostylopids and on supposed tarsal morphology (based on unassociated material) of the Asian arctostylopid Palaeostylops. Therefore, Arctostylopidae were placed in a separate order, Arctostylopida, of enigmatic affinities. Many authors, however, continue to unite Arctostylopidae and Notoungulata based on dental similarities. In the Late Palaeocene Subeng site in Inner Mongolia, we identified the Palaeostylops tarsals based on their size and abundance. This identification is supported by comparison to unpublished Arctostylops tarsals from the North American Clarkforkian, derived from a semi-articulated skeleton also including dental material. Tarsal morphology shows moderate similarity to the gliriform Pseudictops, and strong resemblance to the tarsally conservative gliroid Rhombomylus. Hence, Arctostylopidae may best be grouped with Asian non-gliroid Gliriformes, which we interpret as having dispersed into North America in the Late Palaeocene.

Animals↗

A previously unrecognized group of Middle Jurassic triconodontan mammals from Central Asia.

Ferganodon narynensis gen. et sp. nov. is represented by a lower molariform tooth from the Middle Jurassic (Callovian) Balabansai Svita in Kyrgyzstan. The new genus is allied with Klamelia zhaopengi Chow and Rich 1984 from the Middle Jurassic Shishugou Formation in Xinjiang, northwest China to the new family Klameliidae based on parallelogram-shaped lower molariforms, imbricating rather than interlocking of cusps e-d-f, by a peculiar distolabial cingulid cusp, and by vertical folding of the enamel on the labial crown side. The new family Klameliidae fam. nov. is most similar to Gobiconodontidae by the structure of the molariform teeth and represents a previously unrecognized radiation of eutriconodontan mammals possibly endemic to Central Asia.

Animals↗

Concentration-dependent changes of PCB patterns in fish-eating mammals: structural evidence for induction of cytochrome P450.

Data sets on CB concentrations in fish-eating mammals from five laboratories were combined to test and refine a pharmacokinetic model. Clear differences in PCB patterns were observed between species. The ability to metabolize chlorobiphenyl (CB) congeners with vicinal H-atoms only in the ortho- and meta-positions and with one ortho-chlorine substituent generally increased in the order otter < cetaceans (harbor porpoise, common dolphin) < phocid seals (harbor and grey seal), but the metabolism of congeners with vicinal H-atoms in the meta- and para-positions and with two ortho-chlorines increased in the order cetaceans < seals < otter. Both categories of congeners are probably metabolized by different families of cytochrome P450 (1A and 2B) of which levels apparently differed between the cetaceans, the pinnipeds, and the otter. Within-species CB patterns differed in a concentration-dependent manner. The induction of cytochrome P450 enzymes offers the most likely explanation for this phenomenon, but starvation could have a similar effect on occasion.

Animals↗

Evolutionary implications of multiple SINE insertions in an intronic region from diverse mammals.

An analysis of the nuclear beta-fibrinogen intron 7 locus from 30 taxa representing 12 placental orders of mammals reveals the enriched occurrences of short interspersed element (SINE) insertion events. Mammalian-wide interspersed repeats (MIRs) are present at orthologous sites of all examined species except those in the order Rodentia. The higher substitution rate in mouse and a rare MIR deletion from rat account for the absence of MIR in the rodents. A minimum of five lineage-specific SINE sequences are also found to have independently inserted into this intron in Carnivora, Artiodactyla and Lagomorpha. In the case of Carnivora, the unique amplification pattern of order-specific CAN SINE provides important evidence for the "pan-carnivore" hypothesis of this repeat element and reveals that the CAN SINE family may still be active today. Particularly interesting is the finding that all identified lineage-specific SINE elements show a strong tendency to insert within or in very close proximity to the preexisting MIRs for their efficient integrations, suggesting that the MIR element is a hot spot for successive insertions of other SINEs. The unexpected MIR excision as a result of a random deletion in the rat intron locus and the non-random site targeting detected by this study indicate that SINEs actually have a greater insertional flexibility and regional specificity than had previously been recognized. Implications for SINE sequence evolution upon and following integration, as well as the fascinating interactions between retroposons and the host genomes are discussed.

Animals↗

A high-resolution physical map of equine homologs of HSA19 shows divergent evolution compared with other mammals.

A high-resolution (1 marker/700 kb) physically ordered radiation hybrid (RH) and comparative map of 122 loci on equine homologs of human Chromosome 19 (HSA19) shows a variant evolution of these segments in equids/Perissodactyls compared with other mammals. The segments include parts of both the long and the short arm of horse Chromosome 7 (ECA7), the proximal part of ECA21, and the entire short arm of ECA10. The map includes 93 new markers, of which 89 (64 gene-specific and 25 microsatellite) were genotyped on a 5000-rad horse x hamster RH panel, and 4 were mapped exclusively by FISH. The orientation and alignment of the map was strengthened by 21 new FISH localizations, of which 15 represent genes. The approximately sevenfold-improved map resolution attained in this study will prove extremely useful for candidate gene discovery in the targeted equine chromosomal regions. The highlight of the comparative map is the fine definition of homology between the four equine chromosomal segments and corresponding HSA19 regions specified by physical coordinates (bp) in the human genome sequence. Of particular interest are the regions on ECA7 and ECA21 that correspond to the short arm of HSA19-a genomic rearrangement discovered to date only in equids/Perissodactyls as evidenced through comparative Zoo-FISH analysis of the evolution of ancestral HSA19 segments in eight mammalian orders involving about 50 species.

Animals↗

Ultraviolet properties of Australian mammal urine.

The exploitation of predator signals by potential prey is well researched, but relatively little is known about how predators exploit chemical cues (either deliberate signals or waste by-products) produced by their prey. In Finland, the urine of some small rodents ( Microtus spp. and Clethrionomys spp.) is reflective in the ultraviolet range of wavelengths, and diurnal raptors with ultraviolet vision use these urine marks to track their rodent prey. This study examines the potential for such a phenomenon in Australian systems by studying the ultraviolet properties of urine from 13 native and introduced mammal species that are variously preyed upon by raptors. Urine from all 13 species displayed various levels of ultraviolet absorbance in their urine and fluorescence in the ultraviolet range. However, no signs of ultraviolet hyper-reflectance were detected, suggesting that the urine of European voles have unique ultraviolet properties. Ultraviolet-sensitive predators in Australia may be able to distinguish between species based on variation in the ultraviolet absorbance of their urine, but ultraviolet properties did not differ between prey and non-prey species, nor marsupial and placental groups. Moreover, because many natural surfaces are ultraviolet absorbing, it is unlikely that raptors could rely upon the ultraviolet properties of urine to target key prey species.

Animal Communication↗

The circadian clock in the brain: a structural and functional comparison between mammals and insects.

The circadian master clocks in the brains of mammals and insects are compared in respect to location, organization and function. They show astonishing similarities. Both clocks are anatomically and functionally connected to the optic system and possess multiple output pathways allowing synchronization with the environmental light-dark cycles as well as the control of diverse endocrine, autonomic and behavioral functions. Both circadian master clocks are composed of multiple neurons, which are organized in populations with different morphology, physiology and neurotransmitter content and appear to subserve different functions. In the hamster and in the cockroach, the master clock consists of a core region that gets input from the eyes, and a shell region from which the majority of output projections originate. Communication between core and shell, between all other populations of clock neurons as well as between the master clocks of both brain hemispheres is a prerequisite of normal rhythmic function. Phenomena like rhythm splitting and internal desynchronization can be observed under constant light conditions and are caused by the "uncoupling" of the master clocks of both brain hemispheres.

Animals↗

Asymptomatic Enterocytozoon bieneusi microsporidiosis in captive mammals.

Human microsporidiosis, a serious disease of immunocompetent and immunosuppressed people, can be due to zoonotic transmission of microsporidian spores. A survey utilizing chromotrope 2R stain and fluorescent in situ hybridization techniques for testing feces from 193 captive mammals demonstrated that 3 animals (1.6%) shed Encephalitozoon bieneusi spores. These include two critically endangered species (i.e., black lemurs, Eulemur macaco flavifrons; and Visayan warty pig, Sus cebifrons negrinus) and a threatened species (mongoose lemur, Eulemur mongoz). The concentration of spores varied from 2.7 x 10(5) to 5.7 x 10(5)/g of feces, and all infections were asymptomatic. The study demonstrates that E. bieneusi spores can originate from captive animals, which is of particular epidemiologic importance because the close containment of zoological gardens can facilitate pathogen spread to other animals and also to people such as zoo personnel and visitors.

Animal Diseases↗

Components and connections of the circadian timing system in mammals.

The circadian timing system is a neural network consisting of the hypothalamic suprachiasmatic nucleus, aided by the retina, other hypothalamic nuclei, autonomic regions of the spinal cord, sympathetic ganglia and the pineal gland. Extensive studies conducted over the last two decades have unravelled the principal items of its functional neuroanatomy. The system is responsible for the generation of the circadian rhythm, its synchronization by environmental factors such as light, and its mediation with respect to morphological, physiological and biochemical parameters of mammals that exhibit distinct alterations throughout the 24-h cycle. This review characterizes the brain sites involved and the pathways responsible for the generation and maintenance of circadian rhythmicity.

Animals↗

The maximum attainable body size of herbivorous mammals: morphophysiological constraints on foregut, and adaptations of hindgut fermenters.

An oft-cited nutritional advantage of large body size is that larger animals have lower relative energy requirements and that, due to their increased gastrointestinal tract (GIT) capacity, they achieve longer ingesta passage rates, which allows them to use forage of lower quality. However, the fermentation of plant material cannot be optimized endlessly; there is a time when plant fibre is totally fermented, and another when energy losses due to methanogenic bacteria become punitive. Therefore, very large herbivores would need to evolve adaptations for a comparative acceleration of ingesta passage. To our knowledge, this phenomenon has not been emphasized in the literature to date. We propose that, among the extant herbivores, elephants, with their comparatively fast passage rate and low digestibility coefficients, are indicators of a trend that allowed even larger hindgut fermenting mammals to exist. The limited existing anatomical data on large hindgut fermenters suggests that both a relative shortening of the GIT, an increase in GIT diameter, and a reduced caecum might contribute to relatively faster ingesta passage; however, more anatomical data is needed to verify these hypotheses. The digestive physiology of large foregut fermenters presents a unique problem: ruminant-and nonruminant-forestomachs were designed to delay ingesta passage, and they limit food intake as a side effect. Therefore, with increasing body size and increasing absolute energy requirements, their relative capacity has to increase in order to compensate for this intake limitation. It seems that the foregut fermenting ungulates did not evolve species in which the intake-limiting effect of the foregut could be reduced, e.g. by special bypass structures, and hence this digestive model imposed an intrinsic body size limit. This limit will be lower the more the natural diet enhances the ingesta retention and hence the intake-limiting effect. Therefore, due to the mechanical characteristics of grass, grazing ruminants cannot become as big as the largest browsing ruminant. Ruminants are not absent from the very large body size classes because their digestive physiology offers no particular advantage, but because their digestive physiology itself intrinsically imposes a body size limit. We suggest that the decreasing ability for colonic water absorption in large grazing ruminants and the largest extant foregut fermenter, the hippopotamus, are an indication of this limit, and are the outcome of the competition of organs for the available space within the abdominal cavity. Our hypotheses are supported by the fossil record on extinct ruminant/tylopod species which did not, with the possible exception of the Sivatheriinae, surpass extant species in maximum body size. In contrast to foregut fermentation, the GIT design of hindgut fermenters allows adaptations for relative passage acceleration, which explains why very large extinct mammalian herbivores are thought to have been hindgut fermenters.

Adaptation, Biological↗

Thermoregulation: what role for UCPs in mammals and birds?

Mammals and birds are endotherms and respond to cold exposure by the means of regulatory thermogenesis, either shivering or non-shivering. In this latter case, waste of cell energy as heat can be achieved by uncoupling of mitochondrial respiration. Uncoupling proteins, which belong to the mitochondrial carrier family, are able to transport protons and thus may assume a thermogenic function. The mammalian UCP1 physiological function is now well understood and gives to the brown adipose tissue the capacity for heat generation. But is it really the case for its more recently discovered isoforms UCP2 and UCP3? Additionally, whereas more and more evidence suggests that non-shivering also exists in birds, is the avian UCP also involved in response to cold exposure? In this review, we consider the latest advances in the field of UCP biology and present putative functions for UCP1 homologues.

Acclimatization↗

Isolation, X location and activity of the marsupial homologue of SLC16A2, an XIST-flanking gene in eutherian mammals.

X chromosome inactivation (XCI) achieves dosage compensation between males and females for most X-linked genes in eutherian mammals. It is a whole-chromosome effect under the control of the XIST locus, although some genes escape inactivation. Marsupial XCI differs from the eutherian process, implying fundamental changes in the XCI mechanism during the evolution of the two lineages. There is no direct evidence for the existence of a marsupial XIST homologue. XCI has been studied for only a handful of genes in any marsupial, and none in the model kangaroo Macropus eugenii (the tammar wallaby). We have therefore studied the sequence, location and activity of a gene SLC16A2 (solute carrier, family 16, class A, member 2) that flanks XIST on the human and mouse X chromosomes. A BAC clone containing the marsupial SLC16A2 was mapped to the end of the long arm of the tammar X chromosome and used in RNA FISH experiments to determine whether one or both loci are transcribed in female cells. In male and female cells, only a single signal was found, indicating that the marsupial SLC16A2 gene is silenced on the inactivated X.

Amino Acid Sequence↗

A review of interspecies toxicity extrapolation in birds and mammals and a proposal for long-term toxicity data.

Terrestrial risk assessments for pesticide exposure is generally based on a limited number of toxicity data. The protection target for these assessments requires an extrapolation from species for which toxicity data are available to other species with unknown sensitivity to be able to protect these as well. Our ability to extrapolate toxicity endpoints between species is a major source of uncertainty in risk assessment. Most analyses of interspecies extrapolation in avian risk assessments have dealt with acute toxicity data. It was suggested that, in the absence of a strong rationale to the contrary, we should assume that reproductive data is at least as variable as acute data and that strategies developed for acute data could be applied to long term toxicity data as well. Considering only the two main bird test species for which reproduction data are available (Mallard and Northern Bobwhite), a comparison of the interspecies standard deviation for both acute and reproduction data suggests that the two are equally variable. Analysis of a very limited data set also suggests that this conclusion holds regardless of which endpoint is triggered in the reproduction study. However, the relative sensitivity of the two species established from acute test data appears to be reversed in the case of reproductive data. In addition there seems to be no reason to believe that bodyweight is a factor in helping birds cope with the rigors of chronic dosing, which is in contrast with the acute dosing situation. This suggests that the best extrapolation technique for reproduction test data should be independent of phylogeny and independent of bodyweight scaling. The simplest such method is the one that was proposed by Luttik and Aldenberg (1995, 1997) for both birds and mammals.

Animals↗

Estimating the exposure of birds and mammals to pesticides in long-term risk assessments.

This paper reviews current EU pesticide risk assessment guidance [European Commission (2002) Guidance document on risk assessment for birds and mammals under council directive 91/414/EEC, SANCO/4145/2000EC 2002], and examines some of its assumptions and problems arising from them. Issues associated with obtaining data that adequately describes exposure over the appropriate time-scale are common to both acute and long-term risk assessments but are probably less problematic for long-term exposure. Improvements in problem formulation and ways in which temporal and spatial factors might be incorporated into long-term risk assessments are suggested. The most important temporal issue for long-term risk is how best to model the degree to which wildlife habits are predictable from day to day. In relation to spatial factors, it is suggested that long-term risk assessments could make better use of pesticide usage data that sample usage patterns throughout the UK. The usefulness of detailed simulated farming landscapes populated by wildlife represented as agent-based models, should be explored.

Animals↗