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PubMed1986

Habituation rules for a theory of the cerebellar cortex.

A quantitative model of cerebellar cortical function is described with a complete formalization based on (i) the topology of cerebellar cortical neuronal network, (ii) some particular synaptic properties of cell classes in cerebellum cortex, and (iii) the dynamics of excitation in this network. For (i), a construction of functional classes around one Purkinje cell is given and their existence is discussed. For (ii), as in Marr-Albus model, the modifiability of synapses between parallel fibres and Purkinje cell is assumed. But the formalization permits to consider the consequences of such a property at the level of glomerulus (with granule cells) which is known as a complex transformation system. For (iii) habituation rules are assumed. It is shown that this method leads to some interesting properties in the functioning of cerebellar cortex. Particularly, emitting frequency along a Purkinje cell axon results from a discrimination by the system between transformed input signals and an external "noise" due to all other "contexts," and learning could be considered as the result of a conflict between a set of patterns and the transformed input signals. This model could be a basis for future numerical simulations.

Animals↗

PubMed1996

Molecular dynamics simulations of peptides from BPTI: a closer look at amide-aromatic interactions.

Molecular dynamics (MD) simulations of short peptides in water were performed to establish whether it is possible to reproduce experimental data from chemical shift measurements by nuclear magnetic resonance spectroscopy. Three different tetrapeptides were studied. The first, YTGP (Tyr-Thr-Gly-Pro), shows an electrostatic interaction between the aromatic ring of Tyr and the backbone amide hydrogen atom of Gly. The second, YTAP (Tyr-Thr-Ala-Pro), cannot make such an interaction because of steric hindrance of the Ala side chain and hence does not show a well-defined conformation. The third, FTGP (Phe-Thr-Gly-Pro), is shown to alternate between two different conformations. It is demonstrated that small differences in chemical shift, corresponding to these slightly different conformations, can be quantitatively modeled in MD simulations when using the proper force-field parameters and water model Explicit inclusion of hydrogen atoms o the aromatic rings is essential for a proper description of electrostatic interactions, but the choice of the water model is equally important. We found that a combination of the SPC/E water model and a revised GROMOS87 force field gives close agreement with experiment, while the same and other force fields in combination with SPC or TIP3P water did not reproduce the NMR data at all. Simulations of a longer peptide from bovine pancreatic trypsin inhibitor, containing the YTGP sequence, did show the interaction between the aromatic ring and the amide hydrogen, but not as pronounced as the simulations of shorter periods.

Amides↗

PubMed1982

Neurotransmitter release and its facilitation in crayfish. I. Saturation kinetics of release, and of entry and removal of calcium.

Release and facilitated release of transmitter at neuromuscular junctions of the crayfish Astacus were measured as a function of [Ca]0 at single junctions using a patch clamp technique. Tests were made of a quantitative model that relates release of transmitter to [Ca]i. The model assumes three processes, entry of Ca during the action potential, release of transmitter as a function of [Ca]i, and removal of Ca after the action potential. Each process is described alternatively by linear kinetics or saturation kinetics, and predictions for different combinations of the equations are given. The main findings were in agreement with those predicted by the "saturation" model. The amplitude of synaptic current varies non-linearly with [Ca]0, log-log plot yielding a slope of about 1.6. The degree of facilitation at long intervals is an increasing function of [Ca]0. In addition, the duration of facilitation is prolonged as [Ca]0 is increased, to saturate at [Ca]0 of 9 mM.

Animals↗

PubMed1986

Interpreting trans-retinal recordings of spectral sensitivity.

A quantitative model is developed to describe spectral sensitivity functions recorded extracellularly from heterogeneous populations of receptors in different states of adaptation. This treatment identifies the most important influences and clarifies several general features of experimental results. The shapes of retinal spectral sensitivity curves in different states of chromatic adaptation depend in predictable fashion on whether the primary effect of the adapting light on individual receptors is to decrease Vmax (response compression) or to increase the quantum demand for half-saturation. Some response compression is necessary in order for one or more receptors to drop out of the response at modest levels of adaptation. The apparent ease of adaptation also depends on the criterion voltage, particularly in the presence of response compression. The technique of selective adaptation of the ERG is capable of revealing the presence of receptors that comprise only a few percent of the total population. The short wavelength absorption of all visual pigments normally makes it impossible to use uv or violet light to adapt selectively those receptors with maximal sensitivity in the uv or violet region of the spectrum while sparing receptors with maximal sensitivity at longer wavelengths. The presence of cone oil droplets absorbing at short wavelengths, however, can effectively screen visual pigments in some of the receptors from uv or violet adapting lights.

Adaptation, Ocular↗

PubMed1997

Validity and reliability of Symptom Checklist '90 (SCL90) in an Argentine population sample.

Quantitative models to explore behavioural disorders are being used increasingly often for health care decision making. Unfortunately, there is a dearth of instruments in Argentina specifically designed for our population, and few researchers have focused on adapting and re-establishing psychometric criteria for instruments proven to be useful in other countries. The aims of this study were to assess the psychometric properties and to develop normative samples for a psychological status symptom inventory, the Symptom Checklist 90 (SCL90). We sought to determine the psychological symptom patterns both in physically healthy community-residing respondents and in physically ill patients in Argentina. The nonpatient sample was a random stratified one, made up of 484 individuals from the general population and representative with regard to gender, age, income and educational level. We also analysed a patient sample that included 105 persons with breast cancer. Results indicated acceptable reliability and validity levels as well as adequate sensitivity to detect differences between patients and nonpatients. We concluded that the SCL90 can be used to measure psychological status in Argentina, and the data presented in this paper can be utilized for comparisons with other similar instruments and with other populations.

Adult↗

PubMed1992

Effects of methylphenidate on response rate and measures of motor performance and reinforcement efficacy.

This experiment evaluated the effects of methylphenidate on reinforced responding in rats. In each session the subjects (rats) earned reinforcement on seven different variable-interval reinforcement schedules. The average intervals varied from 108 to 3 s and provided reinforcement rates ranging from about 30 to 1100/h. Response rate was a negatively accelerated function of reinforcement rate. Low doses of methylphenidate (1.0 and 2.0 mg/kg) increased responding maintained by the four leanest schedules, but had little effect on responding maintained by the three densest schedules. In contrast, an 8.0 mg/kg dose increased responding maintained by the three densest schedules and slightly decreased responding maintained by leaner schedules. A quantitative model of reinforced responding, referred to as the matching law or response strength equation, was fitted to the data. This equation has two parameters. On the basis of previous experiments, one was used to measure changes in reinforcement efficacy and the other was used to measure changes in motor performance. The 1.0 and 2.0 mg/kg doses changed the reinforcement parameter in the same way as did increases in deprivation and reward magnitude. The 8.0 mg/kg dose changed the motor parameter in the same was as did decreases in lever weight. It was concluded that methylphenidate increases reinforcement efficacy, and that the highest dose changed the topography of responding. The results are discussed in terms of the response strength equation, the rate dependency principle, and the question of how to interpret changes in reinforcement efficacy and motor performance.

Animals↗

PubMedDate not supplied

1992 ALZA Distinguished Lecture: bioengineering and vascular biology.

The vascular system is naturally dynamic; fluid mechanics and mass transfer are closely integrated with blood and vascular cell function. We are beginning to understand how local wall shear stress and strain modulate endothelial cell metabolism at the gene level. This knowledge may help explain the focal nature of many vascular pathologies, including atherosclerosis. Understanding mechanical control of gene regulation at the level of specific promoter elements and transcription factors involved will lead to development of novel constructs for localized delivery of specific gene products in regions of high or low shear stress or strain in the vascular system. In addition, recent research has shown how local fluid mechanics can alter receptor specificity in cell-to-cell and cell-to-matrix protein adhesion and aggregation. Knowledge of the specific molecular sequences involved in cell-to-cell recognition will allow development of targeted therapeutics, with applications in thrombosis, inflammation, cancer metastasis, and sickle-cell anemia. Bioengineers are uniquely qualified to be leaders in this field, because advances require a synthesis of cell and molecular biology with systems analysis, transport phenomena, and quantitative modeling. Rapid progress in tissue engineering applications will require this new kind of biomedical engineer, which represents both a challenge and an opportunity for our profession.

Biomedical Engineering↗

PubMed1990

Kinetics of dissolution of calcium hydroxyapatite powder. III: pH and sample conditioning effects.

The kinetics of dissolution of synthetic hydroxyapatite powder (HAP) were studied at 37 degrees C and constant pH in the pH range 3.7-6.9 by continuously recording proton uptake and calcium release. The effect of sample conditioning was carefully investigated. The powder previously equilibrated in saturated solutions shows an initial dissolution rate higher than the one obtained when dry powder directly added to the dissolution solution is used. This effect is interpreted by considering surface state differences. As previously shown, dry powder contains important amounts of calcium and phosphate ions adsorbed onto apatite surface, ions which are desorbed during equilibration. It is assumed that the initial presence of these ions slows the dissolution rate during the first stage of the process by the formation of a permselective layer. Except for these adsorption phenomena which are less important for human enamel powder (HEP) having a lower specific surface area, it is shown that in spite of structural, morphological, and purity differences, the general dissolution behavior of HAP is quite similar to that of HEP, previously studied, and for which a quantitative model has been proposed. The dissolution rates are stirring dependent in a large range of stirring speeds and are proportional to [H+]0.64. Moreover, it is shown that in the whole range of studied pH, a calcium accumulation process occurs at the interface during the first minutes of the acidic attack. It is concluded that in our experimental conditions, the dissolution process is limited by the diffusion of calcium and/or phosphate ions in the interface.(ABSTRACT TRUNCATED AT 250 WORDS)

Calcium↗

PubMed1998

[Apoptosis and ischemic infarct].

Apoptosis and programmed cell death have attracted major scientific interest during the last few years. Apoptosis can be differentiated from necrosis by means of morphological, biochemical, molecular and pharmacological parameters. Several molecular pathways leading to apoptosis have been elucidated over the last few years. Apoptosis is not only important for physiological cell turnover, but also plays a role in many pathological processes. Recently, a number of laboratories have found evidence of apoptotic cell death in cerebral ischemia in animal models. Quantitatively, apoptosis seems to be important in the border zone of the infarction, the so-called penumbra. Since parts of the apoptotic cascade can be inhibited, pharmacological treatment seems feasible. The so-called caspase inhibitors are promising therapeutic agents for the treatment of acute stroke and may be administered with other neuroprotective medications in humans in the near future.

Animals↗

PubMed2004

Beta cell function and its relation to insulin action in humans: a critical appraisal.

The importance of both insulin resistance and beta cell dysfunction in the pathogenesis of glucose intolerance is widely recognised. Also popular is the concept that beta cell secretory function must be viewed in the context of extant insulin resistance. This For Debate moves from the premise that, whilst insulin action in vivo can be measured directly by a variety of essentially coherent techniques, measurement of beta cell function is more problematic. We therefore concisely survey the principal in vivo techniques that explore the diverse aspects of beta cell function and conclude that: (i) inter-correlation of clinical tests is only modest in non-diabetic subjects and poor in diabetic individuals; (ii) no single clinical test allows beta cell function to be assessed with accuracy and specificity comparable to those of insulin sensitivity; and (iii) short of complex experiments, mathematical modelling is necessary to interpret insulin secretory responses. Next we discuss the hyperbola paradigm used to describe the reciprocal relation of beta cell function to insulin sensitivity and suggest that: (i) insulin responses reflecting the basal beta cell tone are indeed inversely related to insulin action across degrees of glucose intolerance; (ii) modes of beta cell function that selectively reflect the dynamic response to acutely changing glucose concentrations are largely independent of insulin action; and (iii) when measured by experiment or resolved by modelling, quantitatively the most important of these dynamic secretion parameters is the glucose dose-response curve (glucose sensitivity). In fact, glucose excursions following glucose ingestion (i.e. glucose tolerance) are best explained by dynamic parameters of beta cell function.

Diabetes Mellitus↗

PubMed2001

Genetic variation in bone mineral density and calcaneal ultrasound: a study of the influence of menopause using female twins.

The aim of the study was to determine whether the genetic variance in bone mineral density (BMD) and calcaneal ultrasound differs in pre- and postmenopausal women and to establish whether the genes operating before the menopause are the same as those after the menopause. Twins aged 18-75 years were recruited from the St Thomas' UK Adult Twin Registry. Quantitative model fitting techniques were used to test for differences in genetic influences in pre- and postmenopausal twins of several BMD sites and calcaneal ultrasound measures accounting for age. BMD and heel ultrasound variables were measured in 2490 female twins: 360 monozygotic pairs and 885 dizygotic pairs. The heritability in the group overall ranged from 19% to 76%. A significant increase in total variance was seen for most BMD sites after the menopause. The proportion of total variance explained by genetic influence was higher premenopausally at all sites except the femoral neck. For example, the genetic proportion of total variance for spine BMD was 88% premenopausally and 77% postmenopausally. In contrast there was no significant difference in total variance of ultrasound measures with menopause. There was no indication that traits are influenced by different genes before and after menopause. This study demonstrates that genetic and environmental influences differ significantly in pre- and postmenopausal groups for BMD, but not for calcaneal ultrasound. The total variance in BMD is greater postmenopausally, but there is evidence that the same genes are involved. These data stress the importance of accounting for menopause-gene interactions in the genetic analysis of data on osteoporosis.

Adolescent↗

PubMed2000

Effect of central 5-hydroxytryptamine depletion on inter-temporal choice: a quantitative analysis.

RATIONALE: It has been proposed that the ascending 5-hydroxytryptaminergic (5-HTergic) pathways are involved in "impulse control". Previous experiments have shown that rats whose 5-HTergic pathways have been destroyed are more liable than intact rats to select a smaller, immediate reinforcer rather than a larger, delayed reinforcer (impulsive choice). However, it remains unclear whether this effect of central 5-HT depletion reflects a change in the rate of time discounting (i.e. a change in the rate at which reinforcers become devalued as a function of delay) or a change in sensitivity to reinforcer size. OBJECTIVE: We examined the effect of central 5-HT depletion on time discounting using a quantitative model of inter-temporal choice (multiplicative hyperbolic model), which enables effects on time discounting to be differentiated from effects on sensitivity to reinforcer size. METHODS: Rats received injections of 5,7-dihydroxytryptamine into the dorsal and median raphe nuclei or sham lesions. They were trained to press two levers for food-pellet reinforcers in a discrete-trials adjusting-delay schedule. In free-choice trials, selection of lever A resulted in a brief fixed delay (dA) followed by delivery of one pellet; selection of lever B resulted in a longer variable delay (dB) followed by delivery of two pellets; dB was adjusted in accordance with the subject's choices. The value of dA was varied (0.5-8.0 s) in successive phases of the experiment, and the indifference value of dB was determined in each case. RESULTS: In both groups, the indifference value of dB was linearly related to the value of dA, in accordance with the multiplicative hyperbolic model. The lesioned group showed shorter indifference delays than the sham-lesioned group, this being reflected in a parallel displacement of the linear indifference function. In both experiments, the levels of 5-HT and 5-hydroxyindole-acetic acid were reduced in the brains of the lesioned rats, but the levels of noradrenaline and dopamine were not altered. CONCLUSIONS: According to the multiplicative hyperbolic model, parallel displacement of the linear indifference function uniquely specifies a change in time discounting. Thus these results indicate that central 5-HT depletion results in an increase in the rate of time discounting for food reinforcers.

5,7-Dihydroxytryptamine↗

PubMed1999

Quantitative drug interactions prediction system (Q-DIPS): a computer-based prediction and management support system for drug metabolism interactions.

OBJECTIVE: Drug biotransformation and interactions are a major source of variability in the response to drugs. The superfamily of cytochromes P450 plays a key role in this phenomenon but, because of the complexity of interactions between drugs and isozymes, it becomes more and more difficult for clinicians to master the knowledge required to predict the occurrence of such drug interactions. To predict and help manage the occurrence of cytochrome P450-dependent interactions, we developed an original computer application: Q-DIPS (quantitative drug interactions prediction system). METHODS: A multidisciplinary work team was created, associating clinical pharmacologists, pharmacists and a computer scientist. Major steps of investigation were: (1) the creation of a database to collect qualitative and quantitative data describing substrates, inhibitors and inducers of specific cytochrome P450 isozymes, with quality assessments; (2) the development of multi-access to these data and (3) their incorporation into extrapolation systems allowing the prediction of in vivo drug interactions on the basis of in vitro data. As an example, prediction and validation studies of CYP3A4 inhibition by ketoconazole and fluconazole will be discussed. RESULTS: Q-DIPS gives up-to-date information, in dynamic tables, describing which specific P450 isozymes metabolise a given drug, as well as which drugs may inhibit or induce a given isozyme. To better answer common clinical questions and help to rapidly evaluate the risk of interactions, it is possible to obtain an overview of substances causing interactions with a specific drug or to focus on drugs taken by a patient ("clinical case"). For each question, key references, relevant quantitative data and quality indices are easily accessible. Two modules allowing input with commercial names and the anatomical therapeutic chemical classification were also included. On the basis of enzymatic and pharmacokinetic data generated in vitro or collected in vivo, the extrapolation module integrates quantitative models to predict the impact of a treatment on enzymatic activities. The simplest model predicted a strong but fluctuating inhibition of CYP3A4 by ketoconazole, whereas the impact of fluconazole was lower. Validations with published in vivo data suggested an appropriate prediction of the risk. CONCLUSION: The current Q-DIPS prototype shows promising potential for helping to improve the management of drug interactions involving metabolism. Validation of extrapolation techniques need to be completed, in view of including important factors such as intrahepatocyte drug accumulation, contribution of metabolites to inhibition as well as in vitro non-specific binding to microsomal proteins. The final goal will be to help select the most judicious clinical studies to be performed so as to avoid useless, expensive and unethical investigations in man.

Antifungal Agents↗

PubMed2004

Imaging of malignant tumours of the long bones in children: monitoring response to neoadjuvant chemotherapy and preoperative assessment.

This review focuses on imaging of osteosarcoma and Ewing's sarcoma of the long bones in children during preoperative neoadjuvant chemotherapy. Morphological criteria on plain films and conventional static MRI are insufficiently correlated with histological response. We review the contribution of dynamic MRI, diffusion-weighted MR and nuclear medicine (18FDG-PET) to monitor tumoural necrosis. MRI is currently the best method to evaluate local extension prior to tumour resection, especially to assess the feasibility of conservative surgery. Quantitative models in dynamic MRI and 18FDG-PET are currently being developed in order to find new early prognostic criteria, but for the time being, treatment protocols are still based on the gold standard of histological response.

Adolescent↗

PubMed2006

The influence of photon depth of interaction and non-collinear spread of annihilation photons on PET image spatial resolution.

PURPOSE: The quality of PET imaging is impaired by parallax errors. These errors produce misalignment between the projected location of the true origin of the annihilation event and the line of response determined by the coincidence detection system. Parallax errors are due to the varying depths of photon interaction (DOI) within the scintillator and the non-collinear (NC) emission of the annihilation photons. The aim of this work was to address the problems associated with the DOI and the NC spread of annihilation photons and to develop a quantitative model to assess their impact on image spatial resolution losses for various commonly used scintillators and PET geometries. METHODS: A theoretical model based on Monte Carlo simulations was developed to assess the relative influence of DOI and the NC spread of annihilation photons on PET spatial resolution for various scintillator materials (BGO, LSO, LuAP, GSO, NaI) and PET geometries. RESULTS: The results demonstrate good agreement between simulated, experimental and published overall spatial resolution for some commercial systems, with maximum differences around 1 mm in both 2D and 3D mode. The DOI introduces an impairment of non-stationary spatial resolution along the radial direction, which can be very severe at peripheral positions. As an example, the radial spatial resolution loss due to DOI increased from 1.3 mm at the centre to 6.7 mm at 20 cm from the centre of a BGO camera with a 412-mm radius in 2D mode. Including the NC, the corresponding losses were 3.0 mm at the centre and 7.3 mm 20 cm from the centre. CONCLUSION: Without a DOI detection technique, it seems difficult to improve PET spatial resolution and increase sensitivity by reducing the detector ring radius or by extending the detector in the axial direction. Much effort is expended on the design and configuration of smaller detector elements but more effort should be devoted to the DOI complexity.

Artifacts↗

PubMed2001

Early development of systems analysis in natural resources management from man and nature to the miami conservancy district.

Contemporary approaches to natural resources and environmental decision-making typically draw on a "systems" perspective to assess and improve management strategies. This paper describes the early genesis of the systems analysis approach. It concentrates on a period between the mid-19th to early 20th centuries. During the early part of this period, George Marsh's Man and Nature and related works laid out an approach to problem-solving that recognized the relationship among physically disperse elements in the environment, the need to balance benefits against costs, the potential for using quantitative modeling to understand management options, and the importance of integrating human and natural components into solutions. In the early 20th century, the Miami Conservancy District project brought this approach to fruition with its use of complex simulation and optimization modeling, detailed cost-benefit analysis, and its linking of economics, engineering, science, and law into a far-reaching solution to a complex water resources problem. The objective of this paper is to describe the early development and application of this conceptual approach to problem-solving. An examination of the origins of natural resources systems analysis can broaden one's perspective of the contemporary field to understand its roots as a philosophy for environmental problem-solving.

Conservation of Natural Resources↗

PubMed2004

Passive hinge forces in the feeding apparatus of Aplysia aid retraction during biting but not during swallowing.

Swallowing and biting responses in the marine mollusk Aplysia are both mediated by a cyclical alternation of protraction and retraction movements of the grasping structure, the radula and underlying odontophore, within the feeding apparatus of the animal, the buccal mass. In vivo observations demonstrate that Aplysia biting is associated with strong protractions and rapid initial retractions, whereas Aplysia swallowing is associated with weaker protractions and slower initial retractions. During biting, the musculature joining the radula/odontophore to the buccal mass (termed the "hinge") is stretched more than in swallowing. To test the hypothesis that stretch of the hinge might contribute to rapid retractions observed in biting, we analyzed the hinge's passive properties. During biting, the hinge is stretched sufficiently to assist retraction. In contrast, during swallowing, the hinge is not stretched sufficiently for its passive forces to assist retraction, because the odontophore's anterior movement is smaller than during biting. A quantitative model demonstrated that steady-state passive forces were sufficient to generate the retraction movements observed during biting. Experimental measures of the relative magnitude of the hinge's active and passive forces at the protraction displacements of biting suggest that passive forces are at least a third of the total force.

Animals↗

PubMed2001

Visual filling-in for computing perceptual surface properties.

The visual system is constantly confronted with the problem of integrating local signals into more global arrangements. This arises from the nature of early cell responses, whether they signal localized measures of luminance, motion, retinal position differences, or discontinuities. Consequently, from sparse, local measurements, the visual system must somehow generate the most likely hypothesis that is consistent with them. In this paper, we study the problem of determining achromatic surface properties, namely brightness. Mechanisms of brightness filling-in have been described by qualitative as well as quantitative models, such as by the one proposed by Cohen and Grossberg. We demonstrate that filling-in from contrast estimates leads to a regularized solution for the computational problem of generating brightness representations from sparse estimates. This provides deeper insights into the nature of filling-in processes and the underlying objective function one wishes to compute. This particularly guided the proposal of a new modified version of filling-in, namely confidence-based filling-in which generates more robust brightness representations. Our investigation relates the modeling of perceptual data for biological vision to the mathematical frameworks of regularization theory and linear spatially variant diffusion. It therefore unifies different research directions that have so far coexisted in different scientific communities.

Animals↗