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PubMed1994

Significance of distributed representation in the output layer of a neural network in a pattern recognition task.

In the cerebral cortex, it is assumed that information is represented by the activity pattern of an assembly of neurons and the synaptic efficacies among them. A distributed representation of pattern is incorporated in the output layer of a neural network with an error back-propagation algorithm, in order to study its technological merits. The network has three layers, which consist of a 32 x 32 array of units (1024) for the input layer, 6-25 units for the hidden layer and 12 units for the output layer. 12 triangular patterns with a variety of parameters are presented to the input layer. Three output-layer units are assigned to each input figure. After initial learning, the network responds to the learned pattern with high accuracy. In addition, it responds with high accuracy to similar but unpresented patterns, showing a generalisation for patterns. The network shows resistance to unit de-activation procedures. When the input layer is exposed to the learned pattern, the hidden-layer units show associative activation pattern. These results indicate that the organisation of information representation in the output layer in a neural network strongly influences both the performance of the whole network and information representation in the hidden layer.

Association↗
PubMed1988

Detection of mirror symmetry in random dot patterns at different eccentricities.

Differences between central and eccentric vision in the detection of mirror symmetry were investigated using patterns consisting of small dots. In each trial, a dot pattern was flashed for 140 msec and the subject had to decide whether the upper and lower parts of the dot pattern contained mirror symmetric pairs or whether the dots were distributed totally randomly. Detectability of mirror symmetry declined with increasing eccentricity when the retinal size of the dot patterns was constant at different eccentricities and when the size of the patterns in eccentric vision was size-scaled by the cortical magnification factor derived from the frequency of ganglion cells (M-scaling). The drop in detectability was more rapid for constant-size patterns than for M-scaled patterns. The results seem to support the notion that the encoding of positional information in eccentric vision is inferior to that of central vision even when the test patterns are M-scaled.

Form Perception↗
PubMed1992

Configural effects constrain Fourier models of pattern discrimination.

Many models of spatial pattern discrimination assume that judgments are based on information directly available from mechanisms tuned to limited ranges of spatial frequency and orientation. We tested the validity of this assumption for spatial frequency, orientation, and contrast information in a series of complex pattern discrimination experiments. Observers discriminated between simple gratings, between gratings masked by components that differed widely in spatial frequency and/or orientation, and between patterns that presented two cues to discrimination, one in each frequency and/or orientation band. Component cues were combined either in rigid-object correspondence (e.g. both components were rotated clockwise in one pattern and counterclockwise in the other) or in opposition (e.g. in one pattern one component was rotated clockwise, the other counterclockwise; the direction of rotation was reversed for each component in the second pattern). The results demonstrate that information from tuned pathways is not always used directly in making spatial judgments, but in some cases is combined across wide regions of the Fourier domain prior to the discrimination decision. We find two distinct patterns of combination that appear to independently signal information about texture and edges. These findings provide a potential link between low-level, spatially tuned analyzers in the visual system and higher-level pattern processing mechanisms.

Adult↗
PubMed2003

Radial patterning of Arabidopsis shoots by class III HD-ZIP and KANADI genes.

BACKGROUND: Shoots of all land plants have a radial pattern that can be considered to have an adaxial (central)-abaxial (peripheral) polarity. In Arabidopsis, gain-of-function alleles of PHAVOLUTA and PHABULOSA, members of the class III HD-ZIP gene family, result in adaxialization of lateral organs. Conversely, loss-of-function alleles of the KANADI genes cause an adaxialization of lateral organs. Thus, the class III HD-ZIP and KANADI genes comprise a genetic system that patterns abaxial-adaxial polarity in lateral organs produced from the apical meristem. RESULTS: We show that gain-of-function alleles of REVOLUTA, another member of the class III HD-ZIP gene family, are characterized by adaxialized lateral organs and alterations in the radial patterning of vascular bundles in the stem. The gain-of-function phenotype can be obtained by changing only the REVOLUTA mRNA sequence and without changing the protein sequence; this finding indicates that this phenotype is likely mediated through an interference with microRNA binding. Loss of KANADI activity results in similar alterations in vascular patterning as compared to REVOLUTA gain-of-function alleles. Simultaneous loss-of-function of PHABULOSA, PHAVOLUTA, and REVOLUTA abaxializes cotyledons, abolishes the formation of the primary apical meristem, and in severe cases, eliminates bilateral symmetry; these phenotypes implicate these three genes in radial patterning of both embryonic and postembryonic growth. CONCLUSIONS: Based on complementary vascular and leaf phenotypes of class III HD-ZIP and KANADI mutants, we propose that a common genetic program dependent upon miRNAs governs adaxial-abaxial patterning of leaves and radial patterning of stems in the angiosperm shoot. This finding implies that a common patterning mechanism is shared between apical and vascular meristems.

Arabidopsis↗
PubMed2006

Nonlinear dynamics and pattern bifurcations in a model for vegetation stripes in semi-arid environments.

In many semi-arid environments, vegetation is self-organised into spatial patterns. The most striking examples of this are on gentle slopes, where striped patterns are typical, running parallel to the contours. Previously, Klausmeier [1999. Regular and irregular patterns in semiarid vegetation. Science 284, 1826-1828.] has proposed a model for vegetation stripes based on competition for water. Here, we present a detailed study of the patterned solutions in the full nonlinear model, using numerical bifurcation analysis of both the pattern odes and the model pdes. We show that patterns exist for a wide range of rainfall levels, and in particular for much lower rainfall than have been considered by previous authors. Moreover, we show that for many rainfall levels, patterns with a variety of different wavelengths are stable, with mode selection dependent on initial conditions. This raises the possibility of hysteresis, and in numerical solutions of the model we show that pattern selection depends on rainfall history in a relatively simple way.

Demography↗
PubMed2004

The perceived direction and speed of global motion in Glass pattern sequences.

Observers indicated the perceived direction of global motion in sequences of noisy Glass patterns containing real motion signals in directions that conflicted with the orientation of signal dipoles in the Glass patterns. Dipole orientation influenced the perceived direction of motion. Observers also judged the apparent speed of sequences of independent noiseless Glass and Glass Line patterns (dipoles replaced by lines). Speed was high and increased with the length of lines in Glass Line patterns but not with dipole separation in Glass patterns. When real motion signals were added to sequences of noisy Glass patterns they exerted an influence on apparent speed that increased with motion signal strength but was independent of pattern signal strength. The results suggest that pattern exerts a global influence on the computation of motion direction and, possibly, on speed.

Humans↗
PubMed2006

Detection of Gabor patterns of different sizes, shapes, phases and eccentricities.

Contrast thresholds of vertical Gabor patterns were measured as a function of their eccentricity, size, shape, and phase using a 2AFC method. The patterns were 4 c/deg and they were presented for 90 or 240 ms. Log thresholds increase linearly with eccentricity at a mean rate of 0.47 dB/wavelength. For patterns centered on the fovea, thresholds decrease as the area of the pattern increases over the entire standard deviation range of 12 wavelengths. The TvA functions are concave up on log-log coordinates. For small patterns there is an interaction between shape and size that depends on phase. Threshold contrast energy is a U-shaped function of area with a minimum in the vicinity of 0.4 wavelength indicating detection by small receptive fields. Observers can discriminate among patterns of different sizes when the patterns are at threshold indicating that more than one mechanism is involved. The results are accounted for by a model in which patterns excite an array of slightly elongated receptive fields that are identical except that their sensitivity decreases exponentially with eccentricity. Excitation is raised to a power and then summed linearly across receptive fields to determine the threshold. The results are equally well described by an internal-noise-limited model. The TvA functions are insufficient to separately estimate the noise and the exponent of the power function. However, an experiment that shows that mixing sizes within the trial sequence has no effect on thresholds, suggests that the limiting noise does not increase with the number of mechanisms monitored.

Contrast Sensitivity↗
PubMed2006

The role of luminance contrast in the detection of global structure in static and dynamic, same- and opposite-polarity, Glass patterns.

Perception of global structure conveyed in static Glass patterns is difficult, though not impossible, when the constituent dipoles are formed by partnering opposite polarity dots. We investigate whether the addition of motion signals to opposite-polarity Glass patterns can act to restore the perception of global structure. The stimuli were concentric Glass patterns consisting of 200 dipoles concentrically orientated, or oriented at random orientations, placed on a grey background. For each dipole, one luminance-increment dot (Weber contrast of 1) was paired with another dot set to a contrast ranging between luminance increment and luminance decrement (i.e., a Weber contrast range of approximately -1 to 1). Dipoles were either stationary (Experiment 1), or randomly re-positioned at 17Hz (Experiment 2), on each frame transition. A two-interval forced-choice paradigm, in conjunction with an adaptive staircase, was used to obtain Glass-pattern detection thresholds. The task required observers to identify the interval that contained concentric Glass structure; the other interval contained randomly orientated dipoles. Generally, lower global form thresholds were observed for dynamic and same-polarity Glass patterns than for static and opposite-polarity Glass patterns. In particular, for dynamic presentations improvement in sensitivity was more evident for opposite-polarity than for same-polarity Glass patterns. These findings suggest that motion plays an important role in the detection of global structure in dynamic Glass patterns.

Contrast Sensitivity↗
PubMed2004

Retinoic acid and the control of dorsoventral patterning in the avian spinal cord.

The development of neural subtypes in the dorsoventral (DV) axis of the vertebrate central nervous system (CNS) involves the integration of signalling pathways coupled with the combinatorial expression of homeodomain transcription factors. Previous studies have implicated a role for retinoic acid in the specification of a subtype of motor neurons (MN) and in the patterning of a group of interneurons within the ventral spinal cord. In this study, we use the vitamin A-deficient (VAD) quail model to further investigate the role of retinoids in the patterning of the neural tube. Using genetic markers specific to neuronal cell populations, we demonstrate that in the absence of retinoic acid, there is a disruption to the molecular mechanisms associated with the dorsoventral patterning of the spinal cord. In particular, we observe an uneven dorsal expansion of ventral-specific genes, accompanied by a reduction in the domain of roof plate and dorsal patterning genes, both of which are rescued upon addition of retinoids during development. In addition, there is a loss of V1 interneuron-specific gene expression and a decrease in the ventricular zone expression of motor neuron patterning genes. Interestingly, these effects are localised to the rostral half of the spinal cord, indicating that RA is integrated in both anteroposterior (AP) and dorsoventral patterning processes. Using differential display techniques, we have isolated 27 retinoic acid-regulated genes within the spinal cord that together reveal several interesting potential biological functions for retinoids within the avian neural tube. In summary, we propose that retinoids have an essential role in the patterning of the dorsoventral axis of the spinal cord, and are also required for the correct integration of anteroposterior patterning signals with dorsoventral determinants in the rostral spinal cord.

Amino Acid Sequence↗
PubMed2003

Neurovascular congruence results from a shared patterning mechanism that utilizes Semaphorin3A and Neuropilin-1.

Peripheral nerves and blood vessels have similar patterns in quail forelimb development. Usually, nerves extend adjacent to existing blood vessels, but in a few cases, vessels follow nerves. Nerves have been proposed to follow vascular smooth muscle, endothelium, or their basal laminae. Focusing on the major axial blood vessels and nerves, we found that when nerves grow into forelimbs at E3.5-E5, vascular smooth muscle was not detectable by smooth muscle actin immunoreactivity. Additionally, transmission electron microscopy at E5.5 confirmed that early blood vessels lacked smooth muscle and showed that the endothelial cell layer lacks a basal lamina, and we did not observe physical contact between peripheral nerves and these endothelial cells. To test more generally whether lack of nerves affected blood vessel patterns, forelimb-level neural tube ablations were performed at E2 to produce aneural limbs; these had completely normal vascular patterns up to at least E10. To test more generally whether vascular perturbation affected nerve patterns, VEGF(165), VEGF(121), Ang-1, and soluble Flt-1/Fc proteins singly and in combination were focally introduced via beads implanted into E4.5 forelimbs. These produced significant alterations to the vascular patterns, which included the formation of neo-vessels and the creation of ectopic avascular spaces at E6, but in both under- and overvascularized forelimbs, the peripheral nerve pattern was normal. The spatial distribution of semaphorin3A protein immunoreactivity was consistent with a negative regulation of neural and/or vascular patterning. Semaphorin3A bead implantations into E4.5 forelimbs caused failure of nerves and blood vessels to form and to deviate away from the bead. Conversely, semaphorin3A antibody bead implantation was associated with a local increase in capillary formation. Furthermore, neural tube electroporation at E2 with a construct for the soluble form of neuropilin-1 caused vascular malformations and hemorrhage as well as altered nerve trajectories and peripheral nerve defasciculation at E5-E6. These results suggest that neurovascular congruency does not arise from interdependence between peripheral nerves and blood vessels, but supports the hypothesis that it arises by a shared patterning mechanism that utilizes semaphorin3A.

Angiotensin II↗
PubMed1999

Display symmetry affects positional specificity in same-different judgment of pairs of novel visual patterns.

Deciding whether a novel visual pattern is the same as or different from a previously seen reference is easier if both stimuli are presented to the same rather than to different locations in the field of view (Foster & Kahn (1985). Biological Cybernetics, 51, 305-312; Dill & Fahle (1998). Perception and Psychophysics, 60, 65-81). We investigated whether pattern symmetry interacts with the effect of translation. Patterns were small dot-clouds which could be mirror-symmetric or asymmetric. Translations were displacements of the visual pattern symmetrically across the fovea, either left-right or above-below. We found that same-different discriminations were worse (less accurate and slower) for translated patterns, to an extent which in general was not influenced by pattern symmetry, or pattern orientation, or direction of displacement. However, if the displaced pattern was a mirror image of the original one (along the trajectory of the displacement), then performance was largely invariant to translation. Both positional specificity and its reduction in symmetric displays may be explained by location-specific pre-processing of the visual input.

Adult↗
PubMedDate not supplied

Color shifts induced by S-cone patterns are mediated by a neural representation driven by multiple cone types.

This study investigated chromatic induction from inhomogeneous background patterns. Previous work showed that a background pattern detected by only S cones induced strong color shifts in a nearby test area (Monnier & Shevell, 2003). In that work, the S-cone patterns were composed with constant L- and M-cone stimulation over the entire background; in terms of L and M cones, therefore, the background was uniform. S-cone stimulation was varied over space to produce S-cone-isolated background patterns. These S-cone patterns, however, established spatial structure (the pattern) at both the receptoral level (S-cone stimulation) and the postreceptoral level (S/(L+M)). Here, these two levels of pattern representation were unconfounded to determine whether color shifts induced by S-cone patterns were due to spatial structure within an S-cone-specific neural pathway versus a pathway that combines responses from S cones and other cone types (e.g. S/(L+M)). The results showed that the induced color shifts were mediated by signals within a pathway that combines responses from multiple cone types. These results are consistent with a +s/-s spatially antagonistic neural receptive field, which is found in some neurons in V1 and V2.

Color↗
PubMed1985

Transformations of visual memory induced by implied motions of pattern elements.

Four experiments measured distortions in short-term visual memory induced by displays depicting independent translations of the elements of a pattern. In each experiment, observers saw a sequence of 4 dot patterns and were instructed to remember the third pattern and to compare it with the fourth. The first three patterns depicted translations of the dots in consistent, but separate directions. Error rates and reaction times for rejecting the fourth pattern as different from the third were substantially higher when the dots in that pattern were displaced slightly forward, in the same directions as the implied motions, compared with when the dots were displaced in the opposite, backward directions. These effects showed little variation across interstimulus intervals ranging from 250 to 2,000 ms, and did not depend on whether the displays gave rise to visual apparent motion. However, they were eliminated when the dots in the fourth pattern were displaced by larger amounts in each direction, corresponding to the dot positions in the next and previous patterns in the same inducing sequence. These findings extend our initial report of the phenomenon of "representational momentum" (Freyd & Finke, 1984a), and help to rule out alternatives to the proposal that visual memories tend to undergo, at least to some extent, the transformations implied by a prior sequence of observed events.

Adolescent↗
PubMed1988

Visual parsing and priority effects in temporal order judgements of line drawn patterns.

Five experiments are reported in which the perception of the order of the components of line drawn patterns presented in rapid temporal sequence on a visual display unit was investigated. In experiments 1 and 2, respectively, a schematic face and an asymmetrical geometric design, and a realistic face and a symmetrical geometric design were each divided into four fragments consisting of outline and three internal features. These fragments were presented to observers in sequences in which the position of the outline in the sequence was systematically varied. Observers reported the perceived order of the fragments. If the order was misperceived the interfragment interval was increased until the sequence was correctly perceived. Analysis of the pattern of perceptual errors and the interfragment presentation interval at which the sequence was correctly perceived indicated that observers tended to perceive the sequence correctly when the outline was presented in first or last position, but had difficulty in doing this when it occupied an intermediate position. This effect was significantly stronger with facial than with geometric patterns. Furthermore, in the case of two face patterns, errors were of a form where observers reported the outline presented in positions two or three as occupying positions one or four respectively. In experiment 3 an identical procedure was used to compare the perception of temporally fragmented normal and inverted faces. The outline position effect was equally strong in both cases. In experiment 4 the relative strength of the tendency to move the outline towards first or final position was assessed by dividing each of two patterns, a face and a house, into three fragments consisting of outline and two groups of internal features. Order perception was significantly better with outline in first or third position, but where it was presented in the intermediate position it was reported as being presented in first position. In experiment 5 the general pattern of results obtained in experiments 1, 2, and 3 was verified with the use of a methodology in which pattern fragment sequences and interfragment intervals were both randomised from trial to trial and the observer's task was to specify the position of the outline in the sequence. Four patterns--a normal face, a face with inverted internal features (INF face), a face outline with irrelevant internal features (IRF face), and a geometric design--were each divided into four fragments consisting of outline and three internal features.(ABSTRACT TRUNCATED AT 400 WORDS)

Adolescent↗
PubMed1985

The effect of diagonality on reconstruction of patterns by preschool children.

The study examined the contribution of various aspects of pattern complexity to children's difficulty on reconstruction of patterns. Specifically, diagonal pattern components and spatial orientation of patterns were considered. Twenty-four children between 16 months and 31 months were presented eight 5-square patterns on a 3 X 3 matrix of squares. The squares lighted, went dark, and then could be relighted by the child if touched. Accuracy of reconstruction was determined by the number of squares correctly chosen by the child during reconstruction. The eight patterns were rated according to Leeuwenberg's code length method, Garner's rotation-and-reflection method, Halford and Macdonald's rating scale, and a simple count of the number of diagonal lines. Analysis of children's responding indicated that number of diagonal lines was more predictive of memory performance than the other three rating systems, implying that diagonality is an important feature of pattern complexity that should be included in ratings of patterns used in research with children.

Child Development↗
PubMed1992

Relationship of tumor cell motility and morphologic patterns. Part 1. Melanocytic skin tumors.

In the diagnosis of melanocytic skin tumors, the assessment of the overall architectural pattern (silhouette) is often essential. We have previously shown by a computer simulation model that tumor patterns are likely to depend on the relative degrees of proliferation and motility of the tumor cells. In this study, we examined the morphological pattern of 12 cases each of nevocellular nevi, primary melanoma, and metastatic melanoma by image analysis. The patterns of the individual melanocytic skin tumors were compared statistically with patterns generated by computer simulation, which facilitates estimates of biological properties of the tumor cells. Additionally, mitotic counts were made to measure tumor cell proliferation. A comparison of the three diagnostic groups revealed that the cells of nevocellular nevi show a low degree of motility, which, however, still exceeds the very low degree of proliferation. Thus, an "invasive" pattern with numerous small nests and single cells at the base of the lesion is common. In primary malignant melanoma, tumor cell motility and tumor cell proliferation are significantly increased in various proportions, thus leading to varying morphological patterns. In metastatic melanoma, a strikingly elevated degree of proliferation exceeds the only slightly elevated degree of motility and leads to sharply demarcated, "expansive" lesions. To check the validity of the technical procedure, estimates of proliferation based on pattern analysis alone were compared with the results obtained by mitotic counts. There was a significant correlation, indicating that the assumptions of the computer model and the image analysis procedure are in fact applicable to real-life melanocytic skin tumors.(ABSTRACT TRUNCATED AT 250 WORDS)

Cell Division↗
PubMed2000

Patterns of rehabilitation utilization after hip fracture in acute hospitals and skilled nursing facilities.

BACKGROUND: Hospitalized hip fracture patients may receive physical therapy (PT) in acute and/or postacute settings. Patterns of PT use may vary by patient, clinical, and hospital characteristics. These patterns can be analyzed if the acute and postacute stays are linked. OBJECTIVES: We classified the following patterns of PT use: acute PT only, skilled nursing facility (SNF) PT only, acute and SNF PT, and no PT. For each pattern, we compared (1) characteristics of hip fracture patients, (2) length of stay (LOS), and (3) discharge outcomes. SUBJECTS: The study included 187,990 hospitalized hip fracture patients derived from Medicare administrative data. MEASURES: Dependent variables were PT use patterns, acute hospital and SNF LOS, total episode days of care, and discharge destination. Independent variables were demographic, clinical, and facility characteristics. PT use patterns were also used as independent variables in the LOS and discharge destination models. RESULTS: Patterns of PT use were influenced by demographic and clinical characteristics such as age, race, and surgery type. Similarly, different LOS measures and discharge destinations varied by the PT use patterns. Patients receiving acute PT had longer acute LOSs; however, those patients who were subsequently transferred to SNFs had shorter SNF LOSs and total episode days of care. Patients utilizing PT were more likely to be discharged to home after the acute or SNF stay. CONCLUSIONS: Disparities in PT use exist for subgroups of patients such as the elderly and blacks. Providers should determine the most appropriate setting for initiation of PT to achieve better discharge outcomes with efficient use of resources.

Aged↗
PubMed2002

Reaction-diffusion models of within-feather pigmentation patterning.

Feathers are complex, branched keratin structures that exhibit a diversity of pigmentation patterns. Feather pigments are transferred into developing feather keratinocytes from pigment cells that migrate into the tubular feather germ from the dermis. Within-feather pigment patterns are determined by differential pigmentation of keratinocytes within independent barb ridges during feather development. Little is known about the molecular mechanisms that determine which keratinocytes receive pigment. We apply reaction-diffusion models to the growth of within-feather pigment patterns based on a realistic model of feather growth. These models accurately simulate the growth of a diversity of the within-feather pigmentation patterns found in real feathers, including a central patch, a 'hollow' central patch, concentric central patches, bars, chevrons, a central circular spot, rows of paired spots, and arrays of offset dots. The models can also simulate the complex transitions between distinct pigmentation patterns among feathers observed in real avian plumages, including transitions from bars to chevrons, bars to paired dots, and bars to arrays of dots. The congruence between the developmental dynamics of the simulated and observed feather patterns indicates that the reaction-diffusion models provide a realistic and accurate description of the determination of pigment pattern within avian feather follicles. The models support the hypothesis that within-feather pigmentation patterning is determined by antagonistic interactions among molecular expression gradients within the tubular follicle and feather germ.

Animals↗